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The map label for this gene is cydB [H]

Identifier: 117919691

GI number: 117919691

Start: 1457124

End: 1458263

Strand: Direct

Name: cydB [H]

Synonym: Shewana3_1242

Alternate gene names: 117919691

Gene position: 1457124-1458263 (Clockwise)

Preceding gene: 117919690

Following gene: 117919692

Centisome position: 29.31

GC content: 46.58

Gene sequence:

>1140_bases
ATGTTTGATTATGAAATATTGAGAGTTATCTGGTGGGCTCTGATCGGCGTACTGTTCATCGGATTTGCGGTCACTGACGG
TTTTGACATGGGCGTGGGTGCACTTTTACCGATTATCGGTAAAGACGATACTGAGCGTCGTATTATGGTCAACACCATTG
CTCCCCATTGGGACGGTAACCAAGTATGGTTAATCACCGCAGGTGGTGCCTTGTTTGCTGCATGGCCTATGGTGTATGCA
GTGTCTTTCTCTGGCTTCTATGTGGCCATGATGTTAGTACTGTTTGCCTTGTACACTCGTCCTGTAGGATTTGACTATCG
CTCTAAGATTGAAAATCCAAAATGGCGTAAGTCGTGGGACTGGGCGTTGTTCTGTGGTGGCTTTATTCCACCGCTGATCA
TCGGTGTGGCCTTCGGTAACTTACTCCAAGGTGTGCCATTCAATTTCGATGAGTTCCTGCGTGCGACTTATCACGGTGGT
TTATTTGGCCTGTTGAACCCATTCGGTTTACTGGCAGGCTTAGTGAGCGTGAGCATGTTTATGATGCAAGGCGCTGCTTG
GTTACAAATGAAGACCGACGGTGAGCTGCGTGTACGTGCCGCGAATGCGACTCAGCTATGTGCACTGTTAGTGGCAGTAT
TATTTGCCGCTGCGGGTGTGTGGTTAGCCAATGGTATTGATGGTTATGTTATCACTTCAACCCTTGACCACCATGCACTG
TCTAACCCAACGCTGAAAACCGTTGCGGTTGAGTCTGGCGCTTGGTTAGCCAACTATGATAAGTATCCTATTACTATGCT
GTTCCCAGTATTAGGTGTGGCATTACCACTGCTGGTTATCCTAGTGAGCCGCTTAAATCGTTCAGGTTTTGCGTTCTTAT
TTAGCTCGCTGACAGTGGCTATGGTGATCTTAACTTGTGGTGCAGCAATGTTCCCATTCGTTATGCCATCTTCATTAGAT
CCTAACGTGAGCTTAACCATGTGGGATGCGACTGCGAGTGAAATGACATTAACTGTAATGACTTGGGCGGCGATTATCTT
CGTTCCAATCGTGTTAAGTTACACTGTATGGACTTACTTCAAGATGTTTGGCCGCTTAAACCGCAAACATATTGAAGATA
ACAAAGCCTCACTCTATTAG

Upstream 100 bases:

>100_bases
GATATTCTTGATGCTTAAGTTTGCCCGTCTTGGCCCTAGCAGTTTAAAGACTGGTCGTTATCACTTCGAGAAACTAGAAG
CCTAAGCAGAGGATTTCATT

Downstream 100 bases:

>100_bases
AATTAAGGAGCATCTACTATGTGGTATTTCACGTGGATATTAGGGGTTTTGTTAGCCTGTTCTTTTGGTGTGATCAACGC
CCTGTGGCTTGAAAACACGG

Product: cytochrome d ubiquinol oxidase subunit II

Products: NA

Alternate protein names: Cytochrome bd-I oxidase subunit II; Cytochrome d ubiquinol oxidase subunit II [H]

Number of amino acids: Translated: 379; Mature: 379

Protein sequence:

>379_residues
MFDYEILRVIWWALIGVLFIGFAVTDGFDMGVGALLPIIGKDDTERRIMVNTIAPHWDGNQVWLITAGGALFAAWPMVYA
VSFSGFYVAMMLVLFALYTRPVGFDYRSKIENPKWRKSWDWALFCGGFIPPLIIGVAFGNLLQGVPFNFDEFLRATYHGG
LFGLLNPFGLLAGLVSVSMFMMQGAAWLQMKTDGELRVRAANATQLCALLVAVLFAAAGVWLANGIDGYVITSTLDHHAL
SNPTLKTVAVESGAWLANYDKYPITMLFPVLGVALPLLVILVSRLNRSGFAFLFSSLTVAMVILTCGAAMFPFVMPSSLD
PNVSLTMWDATASEMTLTVMTWAAIIFVPIVLSYTVWTYFKMFGRLNRKHIEDNKASLY

Sequences:

>Translated_379_residues
MFDYEILRVIWWALIGVLFIGFAVTDGFDMGVGALLPIIGKDDTERRIMVNTIAPHWDGNQVWLITAGGALFAAWPMVYA
VSFSGFYVAMMLVLFALYTRPVGFDYRSKIENPKWRKSWDWALFCGGFIPPLIIGVAFGNLLQGVPFNFDEFLRATYHGG
LFGLLNPFGLLAGLVSVSMFMMQGAAWLQMKTDGELRVRAANATQLCALLVAVLFAAAGVWLANGIDGYVITSTLDHHAL
SNPTLKTVAVESGAWLANYDKYPITMLFPVLGVALPLLVILVSRLNRSGFAFLFSSLTVAMVILTCGAAMFPFVMPSSLD
PNVSLTMWDATASEMTLTVMTWAAIIFVPIVLSYTVWTYFKMFGRLNRKHIEDNKASLY
>Mature_379_residues
MFDYEILRVIWWALIGVLFIGFAVTDGFDMGVGALLPIIGKDDTERRIMVNTIAPHWDGNQVWLITAGGALFAAWPMVYA
VSFSGFYVAMMLVLFALYTRPVGFDYRSKIENPKWRKSWDWALFCGGFIPPLIIGVAFGNLLQGVPFNFDEFLRATYHGG
LFGLLNPFGLLAGLVSVSMFMMQGAAWLQMKTDGELRVRAANATQLCALLVAVLFAAAGVWLANGIDGYVITSTLDHHAL
SNPTLKTVAVESGAWLANYDKYPITMLFPVLGVALPLLVILVSRLNRSGFAFLFSSLTVAMVILTCGAAMFPFVMPSSLD
PNVSLTMWDATASEMTLTVMTWAAIIFVPIVLSYTVWTYFKMFGRLNRKHIEDNKASLY

Specific function: Cytochrome d terminal oxidase complex is the component of the aerobic respiratory chain that predominates when cells are grown at low aeration [H]

COG id: COG1294

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 2

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli AppB [H]

Homologues:

Organism=Escherichia coli, GI1786954, Length=379, Percent_Identity=65.9630606860158, Blast_Score=523, Evalue=1e-150,
Organism=Escherichia coli, GI1787213, Length=379, Percent_Identity=52.5065963060686, Blast_Score=409, Evalue=1e-115,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003317 [H]

Pfam domain/function: PF02322 Cyto_ox_2 [H]

EC number: 1.10.3.-

Molecular weight: Translated: 41919; Mature: 41919

Theoretical pI: Translated: 7.04; Mature: 7.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFDYEILRVIWWALIGVLFIGFAVTDGFDMGVGALLPIIGKDDTERRIMVNTIAPHWDGN
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCEEEEEECCCCCCCC
QVWLITAGGALFAAWPMVYAVSFSGFYVAMMLVLFALYTRPVGFDYRSKIENPKWRKSWD
EEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCC
WALFCGGFIPPLIIGVAFGNLLQGVPFNFDEFLRATYHGGLFGLLNPFGLLAGLVSVSMF
HHEEHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
MMQGAAWLQMKTDGELRVRAANATQLCALLVAVLFAAAGVWLANGIDGYVITSTLDHHAL
HHCCCCEEEEECCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECHHHHHC
SNPTLKTVAVESGAWLANYDKYPITMLFPVLGVALPLLVILVSRLNRSGFAFLFSSLTVA
CCCCEEEEEEECCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
MVILTCGAAMFPFVMPSSLDPNVSLTMWDATASEMTLTVMTWAAIIFVPIVLSYTVWTYF
HHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KMFGRLNRKHIEDNKASLY
HHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MFDYEILRVIWWALIGVLFIGFAVTDGFDMGVGALLPIIGKDDTERRIMVNTIAPHWDGN
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCEEEEEECCCCCCCC
QVWLITAGGALFAAWPMVYAVSFSGFYVAMMLVLFALYTRPVGFDYRSKIENPKWRKSWD
EEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCC
WALFCGGFIPPLIIGVAFGNLLQGVPFNFDEFLRATYHGGLFGLLNPFGLLAGLVSVSMF
HHEEHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
MMQGAAWLQMKTDGELRVRAANATQLCALLVAVLFAAAGVWLANGIDGYVITSTLDHHAL
HHCCCCEEEEECCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECHHHHHC
SNPTLKTVAVESGAWLANYDKYPITMLFPVLGVALPLLVILVSRLNRSGFAFLFSSLTVA
CCCCEEEEEEECCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
MVILTCGAAMFPFVMPSSLDPNVSLTMWDATASEMTLTVMTWAAIIFVPIVLSYTVWTYF
HHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KMFGRLNRKHIEDNKASLY
HHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]