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The map label for this gene is cydA [H]

Identifier: 117919690

GI number: 117919690

Start: 1455552

End: 1457108

Strand: Direct

Name: cydA [H]

Synonym: Shewana3_1241

Alternate gene names: 117919690

Gene position: 1455552-1457108 (Clockwise)

Preceding gene: 117919689

Following gene: 117919691

Centisome position: 29.27

GC content: 46.5

Gene sequence:

>1557_bases
ATGATTGTTGAAGAGGTTGTTGAGCTATCACGGTTGCAGTTTGCGCTGACAGCCATGTATCACTTCCTGTTTGTTCCCTT
AACCTTGGGGTTGGCATTTTTGCTGGCTATCATGGAATCACTCTATGTGATGACTGATAAACAAATTTATAAAGATATGA
CTAAGTTCTGGGGTAAGTTGTTTGGTATCAACTTTGCCTTGGGTGTTTCAACGGGTTTAGCGATGGAATTCCAGTTTGGT
ACTAACTGGTCTTATTATTCGCACTATGTGGGTGACATCTTTGGTGCACCACTGGCCATTGAAGGATTAATGGCGTTCTT
CTTAGAATCGACCTTCGTGGGTATGTTCTTCTTCGGTTGGGATCGTTTCTCTAAGCGTCAACACTTAGCGACAACCTGGT
TGGTAGCCTTTGGTTCCAACTTCTCCGCATTATGGATTCTGGTGGCAAACGGTTGGATGCAAAACCCTGTGGGTAGCGTA
TTCAATTACGAAACCATGCGTATGGAAATGACCAGCTTCGCTGATGTTATCTTCAACCCTGTTGCACAGGTGAAGTTTGT
TCACACTGTGGCTTCTGGCTATGTGACTGGCGCAATGTTCGTATTAGCGATCAGCTCTTACTACATTCTGAAGAAACGTG
ACTTACCTTTTGCACGTCGTTCATTTGCGATTGCAGCCAGCTTCGGTATGGCGTCTATCCTGTCTGTTATCGTTCTGGGT
GACGAATCAGGCTATAAAGTGGGTGAAGCGCAGCGCGTTAAGTTAGCGGCAATTGAAGCTGAGTGGCATACAGAACCTGC
TCCTGCAGCCTTTACTGCAGTTGGTTTCCCAAATCAAGAAACCATGCACACCGATTTCGCGGTTAAGATCCCTTACGCTA
TGGGTATCGTAGCAACACGTTCTTTAGATGAAGAAGTAACAGGCCTACGTGACTTAGTGGCTGAACACGAAGTACGTATC
CGCAACGGTATGAAAGCTTACGAGATGCTGGTGAAACTGCGCGCTGGTGATAAGTCTCCAGAGTTACGTGACGCGTTCGA
AGCGGCGAAAGTTGACTTAGGTTACGGCTTACTGCTGAAGCGTTACACCGACAATGTTGTAGATGCGACAGAAGAGCAAA
TCAAAGCGGCAGCGAAGGATTCTATCCCGAATGTGGCACCGATTTTCTGGAGCTTCCGTGTGATGGTTGGCTTAGGCTTT
GTGATGTTGTTTGTGTTCGCTGCAGCCTTCTGGCAAAGCACACGTCATCAGATCGAAGAGAAGAAATGGGTACTTAAAGC
AGCACTCTTTAGCTTGCCATTACCTTGGATTGCGATCGAGTGTGGTTGGTTTGTGGCGGAATATGGCCGTCAACCTTGGA
CCATCTCTGAGGTGCTGCCGACCTTTATGTCTGCTTCGAGTTTAACGACTGGGGATCTGTGGTTCAGTATTATTTCGATT
TCACTGTTCTACACTGTGCTGCTGGTGATCGAGATATTCTTGATGCTTAAGTTTGCCCGTCTTGGCCCTAGCAGTTTAAA
GACTGGTCGTTATCACTTCGAGAAACTAGAAGCCTAA

Upstream 100 bases:

>100_bases
GCTATAAACACAAAATGAAAACTCACTATCCTACAAAGGCACTTGCTACGAATGGCTCAAGTAGTCGTAGCAATTGGACG
CACCACGTAAGGAGTCACCG

Downstream 100 bases:

>100_bases
GCAGAGGATTTCATTATGTTTGATTATGAAATATTGAGAGTTATCTGGTGGGCTCTGATCGGCGTACTGTTCATCGGATT
TGCGGTCACTGACGGTTTTG

Product: cytochrome bd ubiquinol oxidase subunit I

Products: NA

Alternate protein names: Cytochrome d ubiquinol oxidase subunit I [H]

Number of amino acids: Translated: 518; Mature: 518

Protein sequence:

>518_residues
MIVEEVVELSRLQFALTAMYHFLFVPLTLGLAFLLAIMESLYVMTDKQIYKDMTKFWGKLFGINFALGVSTGLAMEFQFG
TNWSYYSHYVGDIFGAPLAIEGLMAFFLESTFVGMFFFGWDRFSKRQHLATTWLVAFGSNFSALWILVANGWMQNPVGSV
FNYETMRMEMTSFADVIFNPVAQVKFVHTVASGYVTGAMFVLAISSYYILKKRDLPFARRSFAIAASFGMASILSVIVLG
DESGYKVGEAQRVKLAAIEAEWHTEPAPAAFTAVGFPNQETMHTDFAVKIPYAMGIVATRSLDEEVTGLRDLVAEHEVRI
RNGMKAYEMLVKLRAGDKSPELRDAFEAAKVDLGYGLLLKRYTDNVVDATEEQIKAAAKDSIPNVAPIFWSFRVMVGLGF
VMLFVFAAAFWQSTRHQIEEKKWVLKAALFSLPLPWIAIECGWFVAEYGRQPWTISEVLPTFMSASSLTTGDLWFSIISI
SLFYTVLLVIEIFLMLKFARLGPSSLKTGRYHFEKLEA

Sequences:

>Translated_518_residues
MIVEEVVELSRLQFALTAMYHFLFVPLTLGLAFLLAIMESLYVMTDKQIYKDMTKFWGKLFGINFALGVSTGLAMEFQFG
TNWSYYSHYVGDIFGAPLAIEGLMAFFLESTFVGMFFFGWDRFSKRQHLATTWLVAFGSNFSALWILVANGWMQNPVGSV
FNYETMRMEMTSFADVIFNPVAQVKFVHTVASGYVTGAMFVLAISSYYILKKRDLPFARRSFAIAASFGMASILSVIVLG
DESGYKVGEAQRVKLAAIEAEWHTEPAPAAFTAVGFPNQETMHTDFAVKIPYAMGIVATRSLDEEVTGLRDLVAEHEVRI
RNGMKAYEMLVKLRAGDKSPELRDAFEAAKVDLGYGLLLKRYTDNVVDATEEQIKAAAKDSIPNVAPIFWSFRVMVGLGF
VMLFVFAAAFWQSTRHQIEEKKWVLKAALFSLPLPWIAIECGWFVAEYGRQPWTISEVLPTFMSASSLTTGDLWFSIISI
SLFYTVLLVIEIFLMLKFARLGPSSLKTGRYHFEKLEA
>Mature_518_residues
MIVEEVVELSRLQFALTAMYHFLFVPLTLGLAFLLAIMESLYVMTDKQIYKDMTKFWGKLFGINFALGVSTGLAMEFQFG
TNWSYYSHYVGDIFGAPLAIEGLMAFFLESTFVGMFFFGWDRFSKRQHLATTWLVAFGSNFSALWILVANGWMQNPVGSV
FNYETMRMEMTSFADVIFNPVAQVKFVHTVASGYVTGAMFVLAISSYYILKKRDLPFARRSFAIAASFGMASILSVIVLG
DESGYKVGEAQRVKLAAIEAEWHTEPAPAAFTAVGFPNQETMHTDFAVKIPYAMGIVATRSLDEEVTGLRDLVAEHEVRI
RNGMKAYEMLVKLRAGDKSPELRDAFEAAKVDLGYGLLLKRYTDNVVDATEEQIKAAAKDSIPNVAPIFWSFRVMVGLGF
VMLFVFAAAFWQSTRHQIEEKKWVLKAALFSLPLPWIAIECGWFVAEYGRQPWTISEVLPTFMSASSLTTGDLWFSIISI
SLFYTVLLVIEIFLMLKFARLGPSSLKTGRYHFEKLEA

Specific function: May be involved in maintaining the low intracellular oxygen concentration required for nitrogen fixation [H]

COG id: COG1271

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 1

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome ubiquinol oxidase subunit 1 family [H]

Homologues:

Organism=Escherichia coli, GI87081779, Length=511, Percent_Identity=72.4070450097847, Blast_Score=793, Evalue=0.0,
Organism=Escherichia coli, GI1787212, Length=504, Percent_Identity=60.1190476190476, Blast_Score=637, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002585 [H]

Pfam domain/function: PF01654 Bac_Ubq_Cox [H]

EC number: 1.10.3.-

Molecular weight: Translated: 58324; Mature: 58324

Theoretical pI: Translated: 6.44; Mature: 6.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIVEEVVELSRLQFALTAMYHFLFVPLTLGLAFLLAIMESLYVMTDKQIYKDMTKFWGKL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FGINFALGVSTGLAMEFQFGTNWSYYSHYVGDIFGAPLAIEGLMAFFLESTFVGMFFFGW
HCCCEEEECCCCEEEEEEECCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
DRFSKRQHLATTWLVAFGSNFSALWILVANGWMQNPVGSVFNYETMRMEMTSFADVIFNP
HHHCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCHHHHCHHHHHHHHHHHHHHHHHH
VAQVKFVHTVASGYVTGAMFVLAISSYYILKKRDLPFARRSFAIAASFGMASILSVIVLG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHHHHHHHHHEEEEC
DESGYKVGEAQRVKLAAIEAEWHTEPAPAAFTAVGFPNQETMHTDFAVKIPYAMGIVATR
CCCCCCCCCCCEEEEEEEEECCCCCCCCCEEEEECCCCCCCCCCCEEEECCHHHHHHHHC
SLDEEVTGLRDLVAEHEVRIRNGMKAYEMLVKLRAGDKSPELRDAFEAAKVDLGYGLLLK
CCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHH
RYTDNVVDATEEQIKAAAKDSIPNVAPIFWSFRVMVGLGFVMLFVFAAAFWQSTRHQIEE
HHHCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KKWVLKAALFSLPLPWIAIECGWFVAEYGRQPWTISEVLPTFMSASSLTTGDLWFSIISI
HHHHHHHHHHHCCCCCEEEEHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHH
SLFYTVLLVIEIFLMLKFARLGPSSLKTGRYHFEKLEA
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCC
>Mature Secondary Structure
MIVEEVVELSRLQFALTAMYHFLFVPLTLGLAFLLAIMESLYVMTDKQIYKDMTKFWGKL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FGINFALGVSTGLAMEFQFGTNWSYYSHYVGDIFGAPLAIEGLMAFFLESTFVGMFFFGW
HCCCEEEECCCCEEEEEEECCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
DRFSKRQHLATTWLVAFGSNFSALWILVANGWMQNPVGSVFNYETMRMEMTSFADVIFNP
HHHCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCHHHHCHHHHHHHHHHHHHHHHHH
VAQVKFVHTVASGYVTGAMFVLAISSYYILKKRDLPFARRSFAIAASFGMASILSVIVLG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHHHHHHHHHEEEEC
DESGYKVGEAQRVKLAAIEAEWHTEPAPAAFTAVGFPNQETMHTDFAVKIPYAMGIVATR
CCCCCCCCCCCEEEEEEEEECCCCCCCCCEEEEECCCCCCCCCCCEEEECCHHHHHHHHC
SLDEEVTGLRDLVAEHEVRIRNGMKAYEMLVKLRAGDKSPELRDAFEAAKVDLGYGLLLK
CCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHH
RYTDNVVDATEEQIKAAAKDSIPNVAPIFWSFRVMVGLGFVMLFVFAAAFWQSTRHQIEE
HHHCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KKWVLKAALFSLPLPWIAIECGWFVAEYGRQPWTISEVLPTFMSASSLTTGDLWFSIISI
HHHHHHHHHHHCCCCCEEEEHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHH
SLFYTVLLVIEIFLMLKFARLGPSSLKTGRYHFEKLEA
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1655703; 1660468; 2170336 [H]