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The map label for this gene is deoB [H]

Identifier: 117919492

GI number: 117919492

Start: 1220286

End: 1221500

Strand: Direct

Name: deoB [H]

Synonym: Shewana3_1043

Alternate gene names: 117919492

Gene position: 1220286-1221500 (Clockwise)

Preceding gene: 117919491

Following gene: 117919493

Centisome position: 24.54

GC content: 49.79

Gene sequence:

>1215_bases
ATGAAACGTACAGTTATAATGATGTTGGATTCCTTTGGCGTGGGCGCTGCTGGTGACGCCGCCAAGTTTGGGGATCTAGG
TTCTGACACATTTGGCCATATCGCTAAAGCGTGTGCCGAAGGTGAAGCCGATATCGGCCGTGAAGGTCCGTTAACGCTGC
CAAACTTGGCCCGTTTAGGGTTAGCCCATGCGGCGATGGAAAGCACGGGGGCGTTTGCTCCAGGCTTTGCGGACAATGTT
GAGTTGATTGGTGCCTATGGCCATGCTCAGGAATTAAGTTCGGGTAAAGATACCCCGAGCGGTCACTGGGAAATGGCGGG
AGTACCCGTATTATTCGAATGGGGCTATTTTAGCGAGCACCAAAACTCATTCCCTAAAGAGCTGACCGATAAGATTTTGG
CCCGTGCGGGACTCGATGGCTTTTTAGGTAACTGCCATGCTTCTGGTACTACTATTCTGGAAGAATTAGGCGAAGAGCAC
ATGCGCTCTGGTAAGCCAATTTTTTACACCTCGGCAGATTCTGTATTCCAGATTGCATGCCATGAAGGCACATTTGGCTT
AGAAAATTTATATCGTCTTTGCGAAATCGCCCGTGAAGAGTTAGAACCTTATAACATTGGCCGCGTGATTGCGCGTCCAT
TCGATGGTACTGGCCCAAGCGACTTTGCTCGTACTGGTAACCGTAAGGATTACTCCCTCGAGCCGCCAGCGAAGACAGTG
TTAGATAAGTTAAAAGCCGCCGGTGGTGAAGTGGTGAGTGTGGGCAAGATTGCCGACATTTACGCTTACTGTGGCATCAC
CAAAAAGGTGAAGGCAAACGGTTTAGAAGCGTTATTTGATGCAACGTTAGCCGAAGTGAAATCAGCGGGTGAAAATACTA
TCGTATTCACTAACTTTGTTGATTTTGACTCCCACTATGGCCACCGCCGTGATGTAGCAGGTTATGCGAAAGGGCTGGAG
TATTTCGACTCGCGTTTACCTGAAATGCTGGCGCTGCTGGATGAGGACGATCTGTTAATCCTCACCGCTGACCATGGTTG
CGACCCAACATGGCAAGGTACTGACCATACTCGTGAATATGTGCCTGTATTGGCCTATGGCGCAGGGCTGAAAGCGGGGT
CACTCGGTCGCCGTAACAGTTTCGCCGATATCGGTCAATCTATCGCAAGCTACTTCAAGCTTGAGCCGATGGAATACGGT
GAGTCGTTTATCTAA

Upstream 100 bases:

>100_bases
AGAAGCGGTGAAAAAAGCGATTCATATCGATGAAGTCGCTCCAGAAAAAACACCTGAGATCTATGCTTATATTCGAGCTT
CGGATCTTTAAGGAAGAATT

Downstream 100 bases:

>100_bases
GTAAACGTGCAAGATCTCGATTTGGCGGCCAACATTGGGCCGCCAGTAAACAAAGACTTAAGTCTTAATAAAATAAACAG
GGGTTATTTCGATGGCAACA

Product: phosphopentomutase

Products: NA

Alternate protein names: Phosphodeoxyribomutase [H]

Number of amino acids: Translated: 404; Mature: 404

Protein sequence:

>404_residues
MKRTVIMMLDSFGVGAAGDAAKFGDLGSDTFGHIAKACAEGEADIGREGPLTLPNLARLGLAHAAMESTGAFAPGFADNV
ELIGAYGHAQELSSGKDTPSGHWEMAGVPVLFEWGYFSEHQNSFPKELTDKILARAGLDGFLGNCHASGTTILEELGEEH
MRSGKPIFYTSADSVFQIACHEGTFGLENLYRLCEIAREELEPYNIGRVIARPFDGTGPSDFARTGNRKDYSLEPPAKTV
LDKLKAAGGEVVSVGKIADIYAYCGITKKVKANGLEALFDATLAEVKSAGENTIVFTNFVDFDSHYGHRRDVAGYAKGLE
YFDSRLPEMLALLDEDDLLILTADHGCDPTWQGTDHTREYVPVLAYGAGLKAGSLGRRNSFADIGQSIASYFKLEPMEYG
ESFI

Sequences:

>Translated_404_residues
MKRTVIMMLDSFGVGAAGDAAKFGDLGSDTFGHIAKACAEGEADIGREGPLTLPNLARLGLAHAAMESTGAFAPGFADNV
ELIGAYGHAQELSSGKDTPSGHWEMAGVPVLFEWGYFSEHQNSFPKELTDKILARAGLDGFLGNCHASGTTILEELGEEH
MRSGKPIFYTSADSVFQIACHEGTFGLENLYRLCEIAREELEPYNIGRVIARPFDGTGPSDFARTGNRKDYSLEPPAKTV
LDKLKAAGGEVVSVGKIADIYAYCGITKKVKANGLEALFDATLAEVKSAGENTIVFTNFVDFDSHYGHRRDVAGYAKGLE
YFDSRLPEMLALLDEDDLLILTADHGCDPTWQGTDHTREYVPVLAYGAGLKAGSLGRRNSFADIGQSIASYFKLEPMEYG
ESFI
>Mature_404_residues
MKRTVIMMLDSFGVGAAGDAAKFGDLGSDTFGHIAKACAEGEADIGREGPLTLPNLARLGLAHAAMESTGAFAPGFADNV
ELIGAYGHAQELSSGKDTPSGHWEMAGVPVLFEWGYFSEHQNSFPKELTDKILARAGLDGFLGNCHASGTTILEELGEEH
MRSGKPIFYTSADSVFQIACHEGTFGLENLYRLCEIAREELEPYNIGRVIARPFDGTGPSDFARTGNRKDYSLEPPAKTV
LDKLKAAGGEVVSVGKIADIYAYCGITKKVKANGLEALFDATLAEVKSAGENTIVFTNFVDFDSHYGHRRDVAGYAKGLE
YFDSRLPEMLALLDEDDLLILTADHGCDPTWQGTDHTREYVPVLAYGAGLKAGSLGRRNSFADIGQSIASYFKLEPMEYG
ESFI

Specific function: Phosphotransfer between the C1 and C5 carbon atoms of pentose [H]

COG id: COG1015

COG function: function code G; Phosphopentomutase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphopentomutase family [H]

Homologues:

Organism=Escherichia coli, GI1790843, Length=406, Percent_Identity=70.935960591133, Blast_Score=595, Evalue=1e-171,
Organism=Escherichia coli, GI1789781, Length=437, Percent_Identity=27.6887871853547, Blast_Score=123, Evalue=2e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017849
- InterPro:   IPR017850
- InterPro:   IPR010045
- InterPro:   IPR006124 [H]

Pfam domain/function: PF01676 Metalloenzyme [H]

EC number: =5.4.2.7 [H]

Molecular weight: Translated: 43596; Mature: 43596

Theoretical pI: Translated: 4.65; Mature: 4.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRTVIMMLDSFGVGAAGDAAKFGDLGSDTFGHIAKACAEGEADIGREGPLTLPNLARLG
CCCEEEEEEECCCCCCCCCCHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
LAHAAMESTGAFAPGFADNVELIGAYGHAQELSSGKDTPSGHWEMAGVPVLFEWGYFSEH
HHHHHHHHCCCCCCCCCCCCEEEECCCCHHHHCCCCCCCCCCEEECCCCEEEECCCCCHH
QNSFPKELTDKILARAGLDGFLGNCHASGTTILEELGEEHMRSGKPIFYTSADSVFQIAC
HCCCCHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCEEEEEE
HEGTFGLENLYRLCEIAREELEPYNIGRVIARPFDGTGPSDFARTGNRKDYSLEPPAKTV
CCCCCCHHHHHHHHHHHHHHCCCCCCCHHEECCCCCCCCHHHHHCCCCCCCCCCCCHHHH
LDKLKAAGGEVVSVGKIADIYAYCGITKKVKANGLEALFDATLAEVKSAGENTIVFTNFV
HHHHHHCCCCEEEHHHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHCCCCCEEEEEEEE
DFDSHYGHRRDVAGYAKGLEYFDSRLPEMLALLDEDDLLILTADHGCDPTWQGTDHTREY
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCHHH
VPVLAYGAGLKAGSLGRRNSFADIGQSIASYFKLEPMEYGESFI
HHHEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHCCCCC
>Mature Secondary Structure
MKRTVIMMLDSFGVGAAGDAAKFGDLGSDTFGHIAKACAEGEADIGREGPLTLPNLARLG
CCCEEEEEEECCCCCCCCCCHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
LAHAAMESTGAFAPGFADNVELIGAYGHAQELSSGKDTPSGHWEMAGVPVLFEWGYFSEH
HHHHHHHHCCCCCCCCCCCCEEEECCCCHHHHCCCCCCCCCCEEECCCCEEEECCCCCHH
QNSFPKELTDKILARAGLDGFLGNCHASGTTILEELGEEHMRSGKPIFYTSADSVFQIAC
HCCCCHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCEEEEEE
HEGTFGLENLYRLCEIAREELEPYNIGRVIARPFDGTGPSDFARTGNRKDYSLEPPAKTV
CCCCCCHHHHHHHHHHHHHHCCCCCCCHHEECCCCCCCCHHHHHCCCCCCCCCCCCHHHH
LDKLKAAGGEVVSVGKIADIYAYCGITKKVKANGLEALFDATLAEVKSAGENTIVFTNFV
HHHHHHCCCCEEEHHHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHCCCCCEEEEEEEE
DFDSHYGHRRDVAGYAKGLEYFDSRLPEMLALLDEDDLLILTADHGCDPTWQGTDHTREY
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCHHH
VPVLAYGAGLKAGSLGRRNSFADIGQSIASYFKLEPMEYGESFI
HHHEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA