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The map label for this gene is ygdK [H]

Identifier: 117919259

GI number: 117919259

Start: 931279

End: 931722

Strand: Reverse

Name: ygdK [H]

Synonym: Shewana3_0807

Alternate gene names: 117919259

Gene position: 931722-931279 (Counterclockwise)

Preceding gene: 117919260

Following gene: 117919258

Centisome position: 18.74

GC content: 49.55

Gene sequence:

>444_bases
ATGACATTGCCAATCATGCCCGCTGCCACCGAGTTTGATTACTCCGTTGAGGATTCATCAAGCCTGTTAGCCCGTTTTGA
GCAAGCGCCAAACTGGCAGGAAAGATATCGCCAAATCATGTTATTAGGTAAAACCTTACCGAGTTTAGCGGATGAATTTC
GCCTTGAGGCCGCCCAAGTCAAAGGCTGCGAGAGCGATGCCTGGCTGTACCATATTGAGCGAGACGCTAAGCATTATTTT
CTAGCCGATAGCGATGCACGCATAGTGAAGGGGTTAATCGGTTTACTGCTGAGCGCCTGTCACGGCAAACAGAGCGACGA
GATACTCGCCTTCGACCCTTCCACCTATTTCAAACAATTAGGGCTTGAGGGCCAATTAAGTCCCTCGCGCACCAATGGCT
TACATGCCTTAGCCAAGGCAATGATTGATGCGGTAAAACCCTAA

Upstream 100 bases:

>100_bases
GCCTTAGCCTCAGTCAAAGAGTTGCTGCTCTAATCCGCTCGCTAAGGGTTAATATCATTGCGCCATCAGGCAACATGCTT
AAGAAGAGGACATTTTCCCC

Downstream 100 bases:

>100_bases
ATCAATCTGCGGGTTAAATCGGTAAAAGAGGGATTTAATCAAAGACTTCTACGCCTTAACAGGGTATAAAGAAGTAAAAA
TTAGCTTCATCTGAAGGAGA

Product: Fe-S metabolism associated SufE

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 147; Mature: 146

Protein sequence:

>147_residues
MTLPIMPAATEFDYSVEDSSSLLARFEQAPNWQERYRQIMLLGKTLPSLADEFRLEAAQVKGCESDAWLYHIERDAKHYF
LADSDARIVKGLIGLLLSACHGKQSDEILAFDPSTYFKQLGLEGQLSPSRTNGLHALAKAMIDAVKP

Sequences:

>Translated_147_residues
MTLPIMPAATEFDYSVEDSSSLLARFEQAPNWQERYRQIMLLGKTLPSLADEFRLEAAQVKGCESDAWLYHIERDAKHYF
LADSDARIVKGLIGLLLSACHGKQSDEILAFDPSTYFKQLGLEGQLSPSRTNGLHALAKAMIDAVKP
>Mature_146_residues
TLPIMPAATEFDYSVEDSSSLLARFEQAPNWQERYRQIMLLGKTLPSLADEFRLEAAQVKGCESDAWLYHIERDAKHYFL
ADSDARIVKGLIGLLLSACHGKQSDEILAFDPSTYFKQLGLEGQLSPSRTNGLHALAKAMIDAVKP

Specific function: Unknown

COG id: COG2166

COG function: function code R; SufE protein probably involved in Fe-S center assembly

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sufE family [H]

Homologues:

Organism=Escherichia coli, GI1789176, Length=129, Percent_Identity=42.6356589147287, Blast_Score=118, Evalue=2e-28,
Organism=Escherichia coli, GI1787969, Length=122, Percent_Identity=36.0655737704918, Blast_Score=82, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017763
- InterPro:   IPR003808 [H]

Pfam domain/function: PF02657 SufE [H]

EC number: NA

Molecular weight: Translated: 16402; Mature: 16271

Theoretical pI: Translated: 5.21; Mature: 5.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLPIMPAATEFDYSVEDSSSLLARFEQAPNWQERYRQIMLLGKTLPSLADEFRLEAAQV
CCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KGCESDAWLYHIERDAKHYFLADSDARIVKGLIGLLLSACHGKQSDEILAFDPSTYFKQL
CCCCCCCEEEEEECCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHC
GLEGQLSPSRTNGLHALAKAMIDAVKP
CCCCCCCCCCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TLPIMPAATEFDYSVEDSSSLLARFEQAPNWQERYRQIMLLGKTLPSLADEFRLEAAQV
CCCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KGCESDAWLYHIERDAKHYFLADSDARIVKGLIGLLLSACHGKQSDEILAFDPSTYFKQL
CCCCCCCEEEEEECCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHC
GLEGQLSPSRTNGLHALAKAMIDAVKP
CCCCCCCCCCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]