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The map label for this gene is yhbH [C]

Identifier: 117919123

GI number: 117919123

Start: 791648

End: 791935

Strand: Reverse

Name: yhbH [C]

Synonym: Shewana3_0671

Alternate gene names: 117919123

Gene position: 791935-791648 (Counterclockwise)

Preceding gene: 117919124

Following gene: 117919122

Centisome position: 15.93

GC content: 41.32

Gene sequence:

>288_bases
ATGCAAATAAACCTGAGTGGACACCATATCGAGATTACTGAATCGTTACGGGCTTATGTTGAGGAAAAGTTTTCAAAACT
TGAACGTCATTTCGAACAGATCAATAATGTGCACGTTGTGCTCAATGTTGAGAAAATGCAACAAATTGCCGAAGCGAGAA
TCAACCTCACCGGTGGTGAAGTCTTCGCGACTTCAGAGCATGCAGATATGTATGCTGCCATAGACGTCCTGATCGACAAG
CTTGATCGTCAGGTTATTAAACACAAAGAGAAGTTAACAAAACACTAG

Upstream 100 bases:

>100_bases
GCGCGCAGAACCATTGCGAAGTACCGAGAGGCGATGCTTATTCCCCCTTCCAATCAGCGTAAAAGTTTATAGCCTAAAGT
GGAAATCGGAGGACGTTTAT

Downstream 100 bases:

>100_bases
CAATGGAACTTCGTACCATACTGCGGCCGGAATGCACGACCTGCGCCACTCCGGGCAGTAAGAAAAAGGTACTGGAACTT
ATCAGCGACTTAGCCGCTGC

Product: sigma 54 modulation protein / SSU ribosomal protein S30P

Products: NA

Alternate protein names: ORF107 [H]

Number of amino acids: Translated: 95; Mature: 95

Protein sequence:

>95_residues
MQINLSGHHIEITESLRAYVEEKFSKLERHFEQINNVHVVLNVEKMQQIAEARINLTGGEVFATSEHADMYAAIDVLIDK
LDRQVIKHKEKLTKH

Sequences:

>Translated_95_residues
MQINLSGHHIEITESLRAYVEEKFSKLERHFEQINNVHVVLNVEKMQQIAEARINLTGGEVFATSEHADMYAAIDVLIDK
LDRQVIKHKEKLTKH
>Mature_95_residues
MQINLSGHHIEITESLRAYVEEKFSKLERHFEQINNVHVVLNVEKMQQIAEARINLTGGEVFATSEHADMYAAIDVLIDK
LDRQVIKHKEKLTKH

Specific function: Probably modulates the activity of sigma(54) (rpoN) [H]

COG id: COG1544

COG function: function code J; Ribosome-associated protein Y (PSrp-1)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma(54) modulation protein family [H]

Homologues:

Organism=Escherichia coli, GI1789595, Length=95, Percent_Identity=54.7368421052632, Blast_Score=112, Evalue=3e-27,
Organism=Escherichia coli, GI1788949, Length=91, Percent_Identity=37.3626373626374, Blast_Score=69, Evalue=5e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003489 [H]

Pfam domain/function: PF02482 Ribosomal_S30AE [H]

EC number: NA

Molecular weight: Translated: 11020; Mature: 11020

Theoretical pI: Translated: 6.63; Mature: 6.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQINLSGHHIEITESLRAYVEEKFSKLERHFEQINNVHVVLNVEKMQQIAEARINLTGGE
CEECCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEHHHHHHHHHHHHCCCCCE
VFATSEHADMYAAIDVLIDKLDRQVIKHKEKLTKH
EEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MQINLSGHHIEITESLRAYVEEKFSKLERHFEQINNVHVVLNVEKMQQIAEARINLTGGE
CEECCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEHHHHHHHHHHHHCCCCCE
VFATSEHADMYAAIDVLIDKLDRQVIKHKEKLTKH
EEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2695747; 3481423 [H]