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The map label for this gene is yciR [C]

Identifier: 117919111

GI number: 117919111

Start: 779893

End: 781833

Strand: Reverse

Name: yciR [C]

Synonym: Shewana3_0659

Alternate gene names: 117919111

Gene position: 781833-779893 (Counterclockwise)

Preceding gene: 117919113

Following gene: 117919109

Centisome position: 15.72

GC content: 49.15

Gene sequence:

>1941_bases
ATGCCCTACAAGTTTGCCCTCCAACAATCTCAAAAAGAACGTTTATTCGCGGATATCGCTATTGATACAGGCAAGATTAC
CGTGCCGCCTGAGATGCTAGAGAATTGGCAACAAACCTTAGATCTGCTCTCCGAGATAGTGGATACGCCGGCCGCGCTTA
TCATGCGTGTTCATCCTACCGAGATTGAAGTATTTGCCTCGAGCCATAGTCAGGGAAATCCCTACAAGCCCCACGATAAA
GAGCATTTAGGCCATGGCCTGTATTGCGAAACCGTGATGAAAGAATGTCGAGAGCTCCACATCCCCAACGCTTTGAAGGA
TGCCGATTGGGATAAAAATCCCGACATAAAACTGGGGATGATAGCCTACTGCGGCCTGCCCTTGCATTGGCCCGATAACA
GCACCTTCGGCACCATTTGTATGCTCGACAGTAAGGAGCGTAACTACAGCCAGCAGTTCCGCAGTTTATTGGCACGATTT
CAAAATGCTATCGAAACCAATCTGATCACTCTGTTCCAACAGGCTAAGTTGCAGCTCCATAACCAACAACTCGAACAGAA
AGTGCAGCAACGCACCCATGAACTGGCAGAACTCAGCGCCAAGTTAATCCGTGAAATTGAAACCCGTACGACGACCGAAA
GCTCACTTGAGTATCATAAAAGCTACGATCCGCTGACAGGGTTACCCAACCGGCTCAATCTCATCAACACCCTAGCGAAT
ATGCTGGAAGAGATTAATCGTAAAGAAAAAATATCAGTGTTTTACCTAGGGCTGCGTAACTTTAAATCCATTAACGACAG
CTACGGTTATCTTATCGGCGATAAGATACTCACCATCTTGAGCCAACGCTTACAACATTGCACAGACGGTCATACCTTTA
TTGCCCGCATCGCGGGGGCGGAGTTTGTGCTAGTGCAAGCCCATAAGCCCTCACAGCGTGAGACTCACAAACTGCTGAAT
CAGATCATCAACTGCTGCAATTCCCCCTTTGGTATCGCAGACTTCGTGATCACTATTCCCTCGTCAATCGGCATAGCACA
GGCGCCAAGCGACGGTATCGATGCCGCAACCCTGCTGCAAAAAGCCGGAGCTGCCATGACCATCAGCAAGGCCGAAGGCA
TTCCCTACAGCTTTTTCAATCAAGACACCCAAATCGCACTGAGCCAGCGCTATCAACTCGAGTCGCACTTAGTCGATGCC
CTGAGAAACAATGAATTAAGCTTGCACTACCAACCCTTTATCGAACTCAAGACTCACAAAGTGATTGGCGCAGAAGCGCT
GCTGCGTTGGCACAATCCCGTGCTAGGACAAGTTACCCCCGACCGATTTATCGCCTTGGCCGAACGTAATGGGCAAATCA
TGGAGATAGGTAACTTTGTGCTCCACAGCGCCATTAAACAAGCCGCCGACTGGTGCCGAATACTGCAGCGGGACTTTAAA
ATCGCCATCAATATCTCCCCCGTACAAATGCGTAATCCCCGCTTTGCCGAACATATTGCCGAGCTACTAACCCTGTACCA
ATTACCTGCCACGGCACTGGAGCTCGAGATCACCGAAGGAATGCTATTGCAGGACGAGCACTTAGCCCATAACGCTATTC
AGCAATTGCAGGAACTGGGGATCCGCATCTCACTCGATGATTTTGGCACCGGCTACTCTTCCCTAAGCTATCTGCAAAAG
TATTCCTTCGATACCTTAAAAATCGACCGCTGCTTTATCAGTAAGCTCGAAAACAGCGAGCAGGACAGGGAGTTAACTAA
GGCCATTATCGCCATAGGTAAAAAGCTCAAACTGAAGGTGATTGCCGAGGGAGTTGAAAACACCCATCAGGACAGTTTTA
TCCGCAGTGAAGAATGCGATTTAGGCCAAGGCTACCTCTATGGTAAACCCATGACGCCAGCGCAGTTTGAGCGGGAGTTC
ATCCGCAAGCCAGAGGCTTAA

Upstream 100 bases:

>100_bases
AGTTACAAATTAAAGCAAACTTAATCGTGGTGGTAAACTCGAAAACGAAGAAAAAGGCTATAGTGTATAAATAACAAAGT
GCTTTTTGGATGAGCCTCAA

Downstream 100 bases:

>100_bases
ATTGATTCTGTAAAAGCAAGCACTGTGGCTGTGATGCCGTCATGCCTTGTTAATGCCAAACAAGCATCTAGCTTGAATAA
GCCCGAACAAACAAATCGAC

Product: diguanylate cyclase/phosphodiesterase with GAF sensor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 646; Mature: 645

Protein sequence:

>646_residues
MPYKFALQQSQKERLFADIAIDTGKITVPPEMLENWQQTLDLLSEIVDTPAALIMRVHPTEIEVFASSHSQGNPYKPHDK
EHLGHGLYCETVMKECRELHIPNALKDADWDKNPDIKLGMIAYCGLPLHWPDNSTFGTICMLDSKERNYSQQFRSLLARF
QNAIETNLITLFQQAKLQLHNQQLEQKVQQRTHELAELSAKLIREIETRTTTESSLEYHKSYDPLTGLPNRLNLINTLAN
MLEEINRKEKISVFYLGLRNFKSINDSYGYLIGDKILTILSQRLQHCTDGHTFIARIAGAEFVLVQAHKPSQRETHKLLN
QIINCCNSPFGIADFVITIPSSIGIAQAPSDGIDAATLLQKAGAAMTISKAEGIPYSFFNQDTQIALSQRYQLESHLVDA
LRNNELSLHYQPFIELKTHKVIGAEALLRWHNPVLGQVTPDRFIALAERNGQIMEIGNFVLHSAIKQAADWCRILQRDFK
IAINISPVQMRNPRFAEHIAELLTLYQLPATALELEITEGMLLQDEHLAHNAIQQLQELGIRISLDDFGTGYSSLSYLQK
YSFDTLKIDRCFISKLENSEQDRELTKAIIAIGKKLKLKVIAEGVENTHQDSFIRSEECDLGQGYLYGKPMTPAQFEREF
IRKPEA

Sequences:

>Translated_646_residues
MPYKFALQQSQKERLFADIAIDTGKITVPPEMLENWQQTLDLLSEIVDTPAALIMRVHPTEIEVFASSHSQGNPYKPHDK
EHLGHGLYCETVMKECRELHIPNALKDADWDKNPDIKLGMIAYCGLPLHWPDNSTFGTICMLDSKERNYSQQFRSLLARF
QNAIETNLITLFQQAKLQLHNQQLEQKVQQRTHELAELSAKLIREIETRTTTESSLEYHKSYDPLTGLPNRLNLINTLAN
MLEEINRKEKISVFYLGLRNFKSINDSYGYLIGDKILTILSQRLQHCTDGHTFIARIAGAEFVLVQAHKPSQRETHKLLN
QIINCCNSPFGIADFVITIPSSIGIAQAPSDGIDAATLLQKAGAAMTISKAEGIPYSFFNQDTQIALSQRYQLESHLVDA
LRNNELSLHYQPFIELKTHKVIGAEALLRWHNPVLGQVTPDRFIALAERNGQIMEIGNFVLHSAIKQAADWCRILQRDFK
IAINISPVQMRNPRFAEHIAELLTLYQLPATALELEITEGMLLQDEHLAHNAIQQLQELGIRISLDDFGTGYSSLSYLQK
YSFDTLKIDRCFISKLENSEQDRELTKAIIAIGKKLKLKVIAEGVENTHQDSFIRSEECDLGQGYLYGKPMTPAQFEREF
IRKPEA
>Mature_645_residues
PYKFALQQSQKERLFADIAIDTGKITVPPEMLENWQQTLDLLSEIVDTPAALIMRVHPTEIEVFASSHSQGNPYKPHDKE
HLGHGLYCETVMKECRELHIPNALKDADWDKNPDIKLGMIAYCGLPLHWPDNSTFGTICMLDSKERNYSQQFRSLLARFQ
NAIETNLITLFQQAKLQLHNQQLEQKVQQRTHELAELSAKLIREIETRTTTESSLEYHKSYDPLTGLPNRLNLINTLANM
LEEINRKEKISVFYLGLRNFKSINDSYGYLIGDKILTILSQRLQHCTDGHTFIARIAGAEFVLVQAHKPSQRETHKLLNQ
IINCCNSPFGIADFVITIPSSIGIAQAPSDGIDAATLLQKAGAAMTISKAEGIPYSFFNQDTQIALSQRYQLESHLVDAL
RNNELSLHYQPFIELKTHKVIGAEALLRWHNPVLGQVTPDRFIALAERNGQIMEIGNFVLHSAIKQAADWCRILQRDFKI
AINISPVQMRNPRFAEHIAELLTLYQLPATALELEITEGMLLQDEHLAHNAIQQLQELGIRISLDDFGTGYSSLSYLQKY
SFDTLKIDRCFISKLENSEQDRELTKAIIAIGKKLKLKVIAEGVENTHQDSFIRSEECDLGQGYLYGKPMTPAQFEREFI
RKPEA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=424, Percent_Identity=34.4339622641509, Blast_Score=255, Evalue=5e-69,
Organism=Escherichia coli, GI87081921, Length=415, Percent_Identity=33.0120481927711, Blast_Score=224, Evalue=1e-59,
Organism=Escherichia coli, GI226510982, Length=427, Percent_Identity=27.6346604215457, Blast_Score=163, Evalue=3e-41,
Organism=Escherichia coli, GI87081743, Length=251, Percent_Identity=35.8565737051793, Blast_Score=154, Evalue=2e-38,
Organism=Escherichia coli, GI1788502, Length=260, Percent_Identity=32.3076923076923, Blast_Score=151, Evalue=1e-37,
Organism=Escherichia coli, GI1787055, Length=426, Percent_Identity=28.4037558685446, Blast_Score=148, Evalue=9e-37,
Organism=Escherichia coli, GI87081980, Length=254, Percent_Identity=31.1023622047244, Blast_Score=138, Evalue=1e-33,
Organism=Escherichia coli, GI1790496, Length=237, Percent_Identity=33.3333333333333, Blast_Score=137, Evalue=2e-33,
Organism=Escherichia coli, GI87081845, Length=254, Percent_Identity=31.1023622047244, Blast_Score=132, Evalue=8e-32,
Organism=Escherichia coli, GI1786507, Length=248, Percent_Identity=31.4516129032258, Blast_Score=121, Evalue=2e-28,
Organism=Escherichia coli, GI1788849, Length=244, Percent_Identity=32.7868852459016, Blast_Score=118, Evalue=1e-27,
Organism=Escherichia coli, GI87082096, Length=196, Percent_Identity=30.1020408163265, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI87081977, Length=253, Percent_Identity=28.0632411067194, Blast_Score=86, Evalue=1e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330
- InterPro:   IPR000014
- InterPro:   IPR013767 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT; PF00989 PAS [H]

EC number: NA

Molecular weight: Translated: 73432; Mature: 73301

Theoretical pI: Translated: 6.40; Mature: 6.40

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPYKFALQQSQKERLFADIAIDTGKITVPPEMLENWQQTLDLLSEIVDTPAALIMRVHPT
CCCCHHHHHHHHHHHHHHEEEECCCEEECHHHHHHHHHHHHHHHHHHCCHHHHEEEECCC
EIEVFASSHSQGNPYKPHDKEHLGHGLYCETVMKECRELHIPNALKDADWDKNPDIKLGM
EEEEEECCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEH
IAYCGLPLHWPDNSTFGTICMLDSKERNYSQQFRSLLARFQNAIETNLITLFQQAKLQLH
HEEECCEEECCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NQQLEQKVQQRTHELAELSAKLIREIETRTTTESSLEYHKSYDPLTGLPNRLNLINTLAN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHH
MLEEINRKEKISVFYLGLRNFKSINDSYGYLIGDKILTILSQRLQHCTDGHTFIARIAGA
HHHHHCCHHEEEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCC
EFVLVQAHKPSQRETHKLLNQIINCCNSPFGIADFVITIPSSIGIAQAPSDGIDAATLLQ
EEEEEECCCCCHHHHHHHHHHHHHHHCCCCCHHHHHEECCCCCCCCCCCCCCCHHHHHHH
KAGAAMTISKAEGIPYSFFNQDTQIALSQRYQLESHLVDALRNNELSLHYQPFIELKTHK
HCCCEEEEECCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCEEEEHHH
VIGAEALLRWHNPVLGQVTPDRFIALAERNGQIMEIGNFVLHSAIKQAADWCRILQRDFK
HHHHHHHHHHCCCCCCCCCHHHEEEEECCCCCEEHHHHHHHHHHHHHHHHHHHHHHHCCE
IAINISPVQMRNPRFAEHIAELLTLYQLPATALELEITEGMLLQDEHLAHNAIQQLQELG
EEEEECCCCCCCCHHHHHHHHHHHHHHCCCHHEEEEECCCCEECHHHHHHHHHHHHHHCC
IRISLDDFGTGYSSLSYLQKYSFDTLKIDRCFISKLENSEQDRELTKAIIAIGKKLKLKV
CEEEECCCCCCHHHHHHHHHCCCCCEEHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHH
IAEGVENTHQDSFIRSEECDLGQGYLYGKPMTPAQFEREFIRKPEA
HHHHHHCCHHHHHCCCCCCCCCCCEEECCCCCHHHHHHHHHCCCCC
>Mature Secondary Structure 
PYKFALQQSQKERLFADIAIDTGKITVPPEMLENWQQTLDLLSEIVDTPAALIMRVHPT
CCCHHHHHHHHHHHHHHEEEECCCEEECHHHHHHHHHHHHHHHHHHCCHHHHEEEECCC
EIEVFASSHSQGNPYKPHDKEHLGHGLYCETVMKECRELHIPNALKDADWDKNPDIKLGM
EEEEEECCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEH
IAYCGLPLHWPDNSTFGTICMLDSKERNYSQQFRSLLARFQNAIETNLITLFQQAKLQLH
HEEECCEEECCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NQQLEQKVQQRTHELAELSAKLIREIETRTTTESSLEYHKSYDPLTGLPNRLNLINTLAN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHH
MLEEINRKEKISVFYLGLRNFKSINDSYGYLIGDKILTILSQRLQHCTDGHTFIARIAGA
HHHHHCCHHEEEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCC
EFVLVQAHKPSQRETHKLLNQIINCCNSPFGIADFVITIPSSIGIAQAPSDGIDAATLLQ
EEEEEECCCCCHHHHHHHHHHHHHHHCCCCCHHHHHEECCCCCCCCCCCCCCCHHHHHHH
KAGAAMTISKAEGIPYSFFNQDTQIALSQRYQLESHLVDALRNNELSLHYQPFIELKTHK
HCCCEEEEECCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCEEEEHHH
VIGAEALLRWHNPVLGQVTPDRFIALAERNGQIMEIGNFVLHSAIKQAADWCRILQRDFK
HHHHHHHHHHCCCCCCCCCHHHEEEEECCCCCEEHHHHHHHHHHHHHHHHHHHHHHHCCE
IAINISPVQMRNPRFAEHIAELLTLYQLPATALELEITEGMLLQDEHLAHNAIQQLQELG
EEEEECCCCCCCCHHHHHHHHHHHHHHCCCHHEEEEECCCCEECHHHHHHHHHHHHHHCC
IRISLDDFGTGYSSLSYLQKYSFDTLKIDRCFISKLENSEQDRELTKAIIAIGKKLKLKV
CEEEECCCCCCHHHHHHHHHCCCCCEEHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHH
IAEGVENTHQDSFIRSEECDLGQGYLYGKPMTPAQFEREFIRKPEA
HHHHHHCCHHHHHCCCCCCCCCCCEEECCCCCHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11259647 [H]