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The map label for this gene is ubiD [H]

Identifier: 117918960

GI number: 117918960

Start: 597225

End: 598706

Strand: Reverse

Name: ubiD [H]

Synonym: Shewana3_0506

Alternate gene names: 117918960

Gene position: 598706-597225 (Counterclockwise)

Preceding gene: 117918963

Following gene: 117918959

Centisome position: 12.04

GC content: 52.02

Gene sequence:

>1482_bases
ATGAGTTTTAAGGATTTACGCAGCTTTATCGATCATCTGGAAGCCAATGGCGAACTCAAACGCATTAGCTACCCCGTTGA
TCCTCATTTAGAAATGACAGAGATCGCCGATCGCGTTCTACGCGCCAAAGGCCCTGCACTCCTATTCGAAAATCCAACCA
ATCATTCAATGCCTGTGCTGGCCAACCTCTTTGGAACTCCCAAACGTGTCGCCATGGCGCTGGGTAAAGAGGATCCACTC
GCGCTGCGCGATGTGGGTGAGCTGCTGGCGTTTTTAAAAGAACCCGAGCCACCACGCGGCTTTAAAGACGCGATTTCAAA
AATCCCCATGTTCAAGCAAGCCTTGAATATGCCGCCTAAGACGGTGCGTAATCCCGCCTGTCAGCAAGTAGTTAAAACCG
GTGATGAGGTCGATTTAACTCAGCTGCCGATCCAGCATTGCTGGCCGGGCGATGTCGCGCCGCTGGTCACTTGGGGTTTA
ACTATCACCAAAGGGCCGCGTAAGAGTCGCCAAAACCTTGGGATCTACCGTCAGCAGTTGCTCGGCAAGAATAAACTCAT
TATGCGCTGGCTGTCTCACCGTGGTGGCGCGCTTGATTTTGCTGATTTTAAAGAGCAATTCCCCGGCGAGCGTTACCCTG
TGGTGGTTGCCTTAGGCTCTGATCCTGTGACCATCTTAGGCGCAGTCACCCCAGTGCCCGATGCCATGAGCGAATACGCC
TTCGCAGGATTGCTGCGCGGCGAGCGCACCGAAGTCTGCAAGGCCTTAAGCTGTGATTTAGAAGTACCCGCCAGCAGCGA
GATCATCCTCGAAGGCTATATCGATCCCGACGAAATGGCCGAAGAAGGCCCCTACGGCGACCACACGGGTTACTACAACG
AGACGGATAAATTCCCCGTCTTTACCGTGACCCACATTACCCACCGTAAGGATCCGATTTACCACAGCACCTACACTGGC
CGTCCACCGGATGAACCCGCCATGTTAGGTGTGGCACTCAACGAAGTGTTTGTGCCGATTTTGCGTAAGCAATATCCTGA
AATTATTGATTTTTACCTGCCTCCCGAAGGTTGCTCCTATCGGATGGCGGTGATCTCGATTCGTAAACAATATCCCGGCC
ATGCTAAACGGGTAATGATGGGTGCTTGGTCCTTCCTGCGCCAATTTATGTATACCAAGTTTATTGTGGTGGTCGACGAC
GATGTGAATTGCCGCGACTGGAACGATGTGATTTGGGCCATTACCACCCGTATGGATCCTAAGCGCGATACAGTGATGAT
CGATAACACGCCTATCGATTACCTCGACTTTGCCTCTCCAGTGGCGGGCCTAGGCTCCAAAATGGGTCTCGATGCCACTA
ATAAGTGGGAAGGTGAAACCAACCGCGAATGGGGCACGCCGATTGTGATGGATCCTAAGGTTAAGCAAAAGATCGACTCA
ATCTGGGATGAATTAGGCATAGACGACAGCCCAACCCTATAA

Upstream 100 bases:

>100_bases
ACGCTTCCAAAGCTGGAAGATCACTGAATAGGTTAACCCTAAAACAGAAAAATGCTATAGTGCGCGCCACACGGATTTCC
ACTGCAGAGGCTATTTCCAC

Downstream 100 bases:

>100_bases
TTCAGCTTAAGCACGACTCTCGTACCCACTTAAGCCAAGAGAATAGGCCGCCAACGGCCTTAATGTGACACCTAACGATA
ACAAATGATGAAAGGTGCAA

Product: 3-octaprenyl-4hydroxybenzoate decarboxylase

Products: NA

Alternate protein names: Polyprenyl p-hydroxybenzoate decarboxylase [H]

Number of amino acids: Translated: 493; Mature: 492

Protein sequence:

>493_residues
MSFKDLRSFIDHLEANGELKRISYPVDPHLEMTEIADRVLRAKGPALLFENPTNHSMPVLANLFGTPKRVAMALGKEDPL
ALRDVGELLAFLKEPEPPRGFKDAISKIPMFKQALNMPPKTVRNPACQQVVKTGDEVDLTQLPIQHCWPGDVAPLVTWGL
TITKGPRKSRQNLGIYRQQLLGKNKLIMRWLSHRGGALDFADFKEQFPGERYPVVVALGSDPVTILGAVTPVPDAMSEYA
FAGLLRGERTEVCKALSCDLEVPASSEIILEGYIDPDEMAEEGPYGDHTGYYNETDKFPVFTVTHITHRKDPIYHSTYTG
RPPDEPAMLGVALNEVFVPILRKQYPEIIDFYLPPEGCSYRMAVISIRKQYPGHAKRVMMGAWSFLRQFMYTKFIVVVDD
DVNCRDWNDVIWAITTRMDPKRDTVMIDNTPIDYLDFASPVAGLGSKMGLDATNKWEGETNREWGTPIVMDPKVKQKIDS
IWDELGIDDSPTL

Sequences:

>Translated_493_residues
MSFKDLRSFIDHLEANGELKRISYPVDPHLEMTEIADRVLRAKGPALLFENPTNHSMPVLANLFGTPKRVAMALGKEDPL
ALRDVGELLAFLKEPEPPRGFKDAISKIPMFKQALNMPPKTVRNPACQQVVKTGDEVDLTQLPIQHCWPGDVAPLVTWGL
TITKGPRKSRQNLGIYRQQLLGKNKLIMRWLSHRGGALDFADFKEQFPGERYPVVVALGSDPVTILGAVTPVPDAMSEYA
FAGLLRGERTEVCKALSCDLEVPASSEIILEGYIDPDEMAEEGPYGDHTGYYNETDKFPVFTVTHITHRKDPIYHSTYTG
RPPDEPAMLGVALNEVFVPILRKQYPEIIDFYLPPEGCSYRMAVISIRKQYPGHAKRVMMGAWSFLRQFMYTKFIVVVDD
DVNCRDWNDVIWAITTRMDPKRDTVMIDNTPIDYLDFASPVAGLGSKMGLDATNKWEGETNREWGTPIVMDPKVKQKIDS
IWDELGIDDSPTL
>Mature_492_residues
SFKDLRSFIDHLEANGELKRISYPVDPHLEMTEIADRVLRAKGPALLFENPTNHSMPVLANLFGTPKRVAMALGKEDPLA
LRDVGELLAFLKEPEPPRGFKDAISKIPMFKQALNMPPKTVRNPACQQVVKTGDEVDLTQLPIQHCWPGDVAPLVTWGLT
ITKGPRKSRQNLGIYRQQLLGKNKLIMRWLSHRGGALDFADFKEQFPGERYPVVVALGSDPVTILGAVTPVPDAMSEYAF
AGLLRGERTEVCKALSCDLEVPASSEIILEGYIDPDEMAEEGPYGDHTGYYNETDKFPVFTVTHITHRKDPIYHSTYTGR
PPDEPAMLGVALNEVFVPILRKQYPEIIDFYLPPEGCSYRMAVISIRKQYPGHAKRVMMGAWSFLRQFMYTKFIVVVDDD
VNCRDWNDVIWAITTRMDPKRDTVMIDNTPIDYLDFASPVAGLGSKMGLDATNKWEGETNREWGTPIVMDPKVKQKIDSI
WDELGIDDSPTL

Specific function: Catalyzes the decarboxylation of 3-octaprenyl-4-hydroxy benzoate to 2-octaprenylphenol [H]

COG id: COG0043

COG function: function code H; 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ubiD family [H]

Homologues:

Organism=Escherichia coli, GI1790277, Length=487, Percent_Identity=75.564681724846, Blast_Score=788, Evalue=0.0,
Organism=Saccharomyces cerevisiae, GI6320748, Length=453, Percent_Identity=24.2825607064018, Blast_Score=112, Evalue=9e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002830
- InterPro:   IPR009002 [H]

Pfam domain/function: PF01977 UbiD [H]

EC number: 4.1.1.-

Molecular weight: Translated: 55494; Mature: 55363

Theoretical pI: Translated: 5.38; Mature: 5.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFKDLRSFIDHLEANGELKRISYPVDPHLEMTEIADRVLRAKGPALLFENPTNHSMPVL
CCHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCHHH
ANLFGTPKRVAMALGKEDPLALRDVGELLAFLKEPEPPRGFKDAISKIPMFKQALNMPPK
HHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHCHHHHHHHCCCCH
TVRNPACQQVVKTGDEVDLTQLPIQHCWPGDVAPLVTWGLTITKGPRKSRQNLGIYRQQL
HHCCHHHHHHHHCCCCCCHHHCCHHHCCCCCCHHHHHCCEEEECCCCHHHHHHHHHHHHH
LGKNKLIMRWLSHRGGALDFADFKEQFPGERYPVVVALGSDPVTILGAVTPVPDAMSEYA
HCCHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCEEEEECCCCEEEEEECCCCCHHHHHHH
FAGLLRGERTEVCKALSCDLEVPASSEIILEGYIDPDEMAEEGPYGDHTGYYNETDKFPV
HHHHHCCCHHHHHHHHCCCCCCCCCCCEEEEECCCHHHHHHCCCCCCCCCCCCCCCCCCE
FTVTHITHRKDPIYHSTYTGRPPDEPAMLGVALNEVFVPILRKQYPEIIDFYLPPEGCSY
EEEEEEECCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHEEEECCCCCCCE
RMAVISIRKQYPGHAKRVMMGAWSFLRQFMYTKFIVVVDDDVNCRDWNDVIWAITTRMDP
EHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCEEEEEEECCCC
KRDTVMIDNTPIDYLDFASPVAGLGSKMGLDATNKWEGETNREWGTPIVMDPKVKQKIDS
CCCEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEECCHHHHHHHH
IWDELGIDDSPTL
HHHHHCCCCCCCC
>Mature Secondary Structure 
SFKDLRSFIDHLEANGELKRISYPVDPHLEMTEIADRVLRAKGPALLFENPTNHSMPVL
CHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCHHH
ANLFGTPKRVAMALGKEDPLALRDVGELLAFLKEPEPPRGFKDAISKIPMFKQALNMPPK
HHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHCHHHHHHHCCCCH
TVRNPACQQVVKTGDEVDLTQLPIQHCWPGDVAPLVTWGLTITKGPRKSRQNLGIYRQQL
HHCCHHHHHHHHCCCCCCHHHCCHHHCCCCCCHHHHHCCEEEECCCCHHHHHHHHHHHHH
LGKNKLIMRWLSHRGGALDFADFKEQFPGERYPVVVALGSDPVTILGAVTPVPDAMSEYA
HCCHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCEEEEECCCCEEEEEECCCCCHHHHHHH
FAGLLRGERTEVCKALSCDLEVPASSEIILEGYIDPDEMAEEGPYGDHTGYYNETDKFPV
HHHHHCCCHHHHHHHHCCCCCCCCCCCEEEEECCCHHHHHHCCCCCCCCCCCCCCCCCCE
FTVTHITHRKDPIYHSTYTGRPPDEPAMLGVALNEVFVPILRKQYPEIIDFYLPPEGCSY
EEEEEEECCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHEEEECCCCCCCE
RMAVISIRKQYPGHAKRVMMGAWSFLRQFMYTKFIVVVDDDVNCRDWNDVIWAITTRMDP
EHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCEEEEEEECCCC
KRDTVMIDNTPIDYLDFASPVAGLGSKMGLDATNKWEGETNREWGTPIVMDPKVKQKIDS
CCCEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEECCHHHHHHHH
IWDELGIDDSPTL
HHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA