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The map label for this gene is ybbO [C]

Identifier: 117918963

GI number: 117918963

Start: 601031

End: 601708

Strand: Reverse

Name: ybbO [C]

Synonym: Shewana3_0509

Alternate gene names: 117918963

Gene position: 601708-601031 (Counterclockwise)

Preceding gene: 117918964

Following gene: 117918960

Centisome position: 12.1

GC content: 53.24

Gene sequence:

>678_bases
ATGATACTGATAACTGGCGCAAGTAGTGGCTTAGGCGCGGCATTAGCCGCCCTGTATGCCAAGGATAACCAAGCACTCAC
ACTGACGGGACGCGATGCCAATCGCCTGCATACCGTGGCCAATGCCCTTAGCCCATTTTCAACCCAAAGCATCAGCGCCA
TTAGTGCCGATTTAGCGGACGAGGCGAGTGTCGAAGCCCTATTCGATGGCCTTACCGATACCCCCAACACGGTTATCCAC
TGCGCTGGCAGTGGTTACTTCGGCACGCTGGAAACCCAAGGTACGAGTGAAATCCAAGCGCTGCTGAATAACAATGTCAC
TTCAACCATTCTGTTGGTACGTGAATTGGTGAAACGCTATAAACAGCAAGCAGTTAAGGTCGTGATCGTGATGTCCACTG
CCGCCCTTACCGCCAAAGCGGGAGAGTCGACCTACTGCGCCGCCAAATGGGCGGTGCGGGGCTTTATCGAATCGGTACGT
TTGGAGCTCAAGCAGAGTCCGATGAAGTTGATTGCGGTTTATCCAGGCGGTATGGATACCGGCTTTTGGCCGAGCAGTGG
TAAGAGTCTAGACACCTCAAGCTTTATGTCCGCCGATGAGGCCGCTGGCATGCTAAAACAAGCGTTGCTTGCCACCGAAC
ATGGTTATATCGCCGATATCACCATTCAACGGGGATAA

Upstream 100 bases:

>100_bases
TGGCGCCATTTGGGTGAAAGATGGGGACGAGGTCGCCTTCGACCAGCCGCTGTTCACTCTGATCGAAACTTAGACTTCGA
AATAGAATTTAGAGGTAAAG

Downstream 100 bases:

>100_bases
CGGATTAAGACGACGAGTTAATGATAAACACATGGGCGGCCAGAGCATCAAGTTGCCTTAGCCGCCCATTCTTTTGAATC
AATCCCTTAGTCGATGCAAT

Product: short-chain dehydrogenase/reductase SDR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 225; Mature: 225

Protein sequence:

>225_residues
MILITGASSGLGAALAALYAKDNQALTLTGRDANRLHTVANALSPFSTQSISAISADLADEASVEALFDGLTDTPNTVIH
CAGSGYFGTLETQGTSEIQALLNNNVTSTILLVRELVKRYKQQAVKVVIVMSTAALTAKAGESTYCAAKWAVRGFIESVR
LELKQSPMKLIAVYPGGMDTGFWPSSGKSLDTSSFMSADEAAGMLKQALLATEHGYIADITIQRG

Sequences:

>Translated_225_residues
MILITGASSGLGAALAALYAKDNQALTLTGRDANRLHTVANALSPFSTQSISAISADLADEASVEALFDGLTDTPNTVIH
CAGSGYFGTLETQGTSEIQALLNNNVTSTILLVRELVKRYKQQAVKVVIVMSTAALTAKAGESTYCAAKWAVRGFIESVR
LELKQSPMKLIAVYPGGMDTGFWPSSGKSLDTSSFMSADEAAGMLKQALLATEHGYIADITIQRG
>Mature_225_residues
MILITGASSGLGAALAALYAKDNQALTLTGRDANRLHTVANALSPFSTQSISAISADLADEASVEALFDGLTDTPNTVIH
CAGSGYFGTLETQGTSEIQALLNNNVTSTILLVRELVKRYKQQAVKVVIVMSTAALTAKAGESTYCAAKWAVRGFIESVR
LELKQSPMKLIAVYPGGMDTGFWPSSGKSLDTSSFMSADEAAGMLKQALLATEHGYIADITIQRG

Specific function: Unknown

COG id: COG0300

COG function: function code R; Short-chain dehydrogenases of various substrate specificities

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI4503817, Length=190, Percent_Identity=27.3684210526316, Blast_Score=67, Evalue=9e-12,
Organism=Homo sapiens, GI223718074, Length=190, Percent_Identity=30.5263157894737, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI7657478, Length=187, Percent_Identity=27.2727272727273, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI71994600, Length=195, Percent_Identity=33.8461538461538, Blast_Score=71, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI17559104, Length=201, Percent_Identity=26.865671641791, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI71994604, Length=200, Percent_Identity=31, Blast_Score=65, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6323882, Length=242, Percent_Identity=25.6198347107438, Blast_Score=63, Evalue=5e-11,
Organism=Drosophila melanogaster, GI24651139, Length=229, Percent_Identity=27.9475982532751, Blast_Score=74, Evalue=9e-14,
Organism=Drosophila melanogaster, GI23397609, Length=222, Percent_Identity=27.9279279279279, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24644339, Length=202, Percent_Identity=30.1980198019802, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI116007236, Length=235, Percent_Identity=25.531914893617, Blast_Score=64, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 23653; Mature: 23653

Theoretical pI: Translated: 5.70; Mature: 5.70

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MILITGASSGLGAALAALYAKDNQALTLTGRDANRLHTVANALSPFSTQSISAISADLAD
CEEEEECCCCHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHCCCCCCHHHHHHHHHHCC
EASVEALFDGLTDTPNTVIHCAGSGYFGTLETQGTSEIQALLNNNVTSTILLVRELVKRY
HHHHHHHHCCCCCCCCEEEEECCCCEEEEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHH
KQQAVKVVIVMSTAALTAKAGESTYCAAKWAVRGFIESVRLELKQSPMKLIAVYPGGMDT
HHHHEEEEEEEECHHHEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCC
GFWPSSGKSLDTSSFMSADEAAGMLKQALLATEHGYIADITIQRG
CCCCCCCCCCCHHHHHCHHHHHHHHHHHHHHCCCCEEEEEEEECC
>Mature Secondary Structure
MILITGASSGLGAALAALYAKDNQALTLTGRDANRLHTVANALSPFSTQSISAISADLAD
CEEEEECCCCHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHCCCCCCHHHHHHHHHHCC
EASVEALFDGLTDTPNTVIHCAGSGYFGTLETQGTSEIQALLNNNVTSTILLVRELVKRY
HHHHHHHHCCCCCCCCEEEEECCCCEEEEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHH
KQQAVKVVIVMSTAALTAKAGESTYCAAKWAVRGFIESVRLELKQSPMKLIAVYPGGMDT
HHHHEEEEEEEECHHHEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCC
GFWPSSGKSLDTSSFMSADEAAGMLKQALLATEHGYIADITIQRG
CCCCCCCCCCCHHHHHCHHHHHHHHHHHHHHCCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11418146 [H]