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The map label for this gene is ccmH [H]

Identifier: 117918942

GI number: 117918942

Start: 568921

End: 569340

Strand: Reverse

Name: ccmH [H]

Synonym: Shewana3_0487

Alternate gene names: 117918942

Gene position: 569340-568921 (Counterclockwise)

Preceding gene: 117918943

Following gene: 117918941

Centisome position: 11.45

GC content: 54.29

Gene sequence:

>420_bases
ATGAACCCGCTGTTTCGCTCGCCCTATTTGAGCCTCTTATTTTGGTTGCTGTCACTGAGCCTCTGCTTTGGCGGCGCGAC
ATTTCTCGCCACGGCGCAGGAGGCCCCCAACCTTGGCGCCTCCTACCAACAGCAAGCCATAGAGATCAGTAAAGTGCTGC
GCTGCCCTATGGCAACCAATCAAACCTTATTTGAGTCGCAAGCGCCGATTGCCCATGAGCTTAAAGGGCAAATCTTTTCA
CTGTTGGAACAAGGCTATAAGCGGGACGAGATCCTCGATTTTATGGTGCAGCGCTACGGCGAAAAAATCCGTTATCAGCC
CGAATTTAAGCCCGCCACACTGGCACTCTGGCTCGGCCCGATCGTGCTGCTGGTCGTGGGGTTGGGTTTAGGGCTAGCCC
TAATAAAACGCAGGCCATAG

Upstream 100 bases:

>100_bases
TCGCTGGCGCGATTGCCGCTTGGCCAATCAAACAACCCCATAGAGTCCCACAAACAAAGGCGTTGAATGTAACCAATTCA
CCAAGGGAGACAATGTCGTT

Downstream 100 bases:

>100_bases
CCCTTAAACCACAGCCCCGATTACTCAGTTTGAATAGAAGGATAACCCCATGAAACCTTACATCGCCAAGCTCACTCTCC
TTTGCGCCGCATGGCTACTG

Product: cytochrome C biogenesis protein

Products: NA

Alternate protein names: Cytochrome c-type biogenesis protein CycL [H]

Number of amino acids: Translated: 139; Mature: 139

Protein sequence:

>139_residues
MNPLFRSPYLSLLFWLLSLSLCFGGATFLATAQEAPNLGASYQQQAIEISKVLRCPMATNQTLFESQAPIAHELKGQIFS
LLEQGYKRDEILDFMVQRYGEKIRYQPEFKPATLALWLGPIVLLVVGLGLGLALIKRRP

Sequences:

>Translated_139_residues
MNPLFRSPYLSLLFWLLSLSLCFGGATFLATAQEAPNLGASYQQQAIEISKVLRCPMATNQTLFESQAPIAHELKGQIFS
LLEQGYKRDEILDFMVQRYGEKIRYQPEFKPATLALWLGPIVLLVVGLGLGLALIKRRP
>Mature_139_residues
MNPLFRSPYLSLLFWLLSLSLCFGGATFLATAQEAPNLGASYQQQAIEISKVLRCPMATNQTLFESQAPIAHELKGQIFS
LLEQGYKRDEILDFMVQRYGEKIRYQPEFKPATLALWLGPIVLLVVGLGLGLALIKRRP

Specific function: Required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG3088

COG function: function code O; Uncharacterized protein involved in biosynthesis of c-type cytochromes

Gene ontology:

Cell location: Membrane; Single-pass membrane protein; Periplasmic side (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CcmH/CycL/Ccl2/NrfF family [H]

Homologues:

Organism=Escherichia coli, GI1788522, Length=85, Percent_Identity=35.2941176470588, Blast_Score=75, Evalue=2e-15,
Organism=Escherichia coli, GI1790512, Length=86, Percent_Identity=40.6976744186046, Blast_Score=67, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005616 [H]

Pfam domain/function: PF03918 CcmH [H]

EC number: NA

Molecular weight: Translated: 15600; Mature: 15600

Theoretical pI: Translated: 9.13; Mature: 9.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNPLFRSPYLSLLFWLLSLSLCFGGATFLATAQEAPNLGASYQQQAIEISKVLRCPMATN
CCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCC
QTLFESQAPIAHELKGQIFSLLEQGYKRDEILDFMVQRYGEKIRYQPEFKPATLALWLGP
CHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
IVLLVVGLGLGLALIKRRP
HHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNPLFRSPYLSLLFWLLSLSLCFGGATFLATAQEAPNLGASYQQQAIEISKVLRCPMATN
CCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCC
QTLFESQAPIAHELKGQIFSLLEQGYKRDEILDFMVQRYGEKIRYQPEFKPATLALWLGP
CHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
IVLLVVGLGLGLALIKRRP
HHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA