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The map label for this gene is ccmF [H]

Identifier: 117918943

GI number: 117918943

Start: 569337

End: 571376

Strand: Reverse

Name: ccmF [H]

Synonym: Shewana3_0488

Alternate gene names: 117918943

Gene position: 571376-569337 (Counterclockwise)

Preceding gene: 117918955

Following gene: 117918942

Centisome position: 11.49

GC content: 48.43

Gene sequence:

>2040_bases
ATGATAAATATGACTCCAGAAATAGGACATATATTGCTAATCATCAGCACTGTGTTGGCATTACTCTCCGCCATTATTCA
TTTTTTTAGCATTCATCAGTCACAACTTTATTTAATCGAGTTCGGCAATAAATTATTTAACGCCATGTTTATAAGCTTAT
TGAGCGCACTCTTATGCCTTATTTACAGCTTTATTAGCGATGACTTTTCGGTTGCCTATGTGGCGAACCATTCCAATAGC
CAGCTTGCCCTCGGCTATAAAATTGCCGCTGTGTGGGGCAGCCATGAAGGCTCGATGCTATTTTGGGTTTTCGCCATCGC
GTTATGGGGTGCCATTATCAATTGCCGCCAAGCGGGCAAATTCGCTGGCTTAGGTAATGCCGATGTGCAGACAGATAAAG
CCTACTTTGCACGGCTACTGGCGATTCTCGCCTTAGTTATCCTTGGCTTTAATCTGTTTTTACTCTTTACCTCCAATCCC
TTTGCCCGATTACTGCCCAATATTCCGATTGCGGGGCGTGACCTCAATCCGATATTGCAAGACATTGGCTTAATACTGCA
CCCGCCGATGCTGTTTTTAGGTTATGTCGGGCTAACCGTTTGCTTTGCCGCAGCGCTAGCATCCCTGCTGGGTGGCGCAT
TAGTGCATCGCCACCTCGAATACTTGCGGCCTTGGGTATTATTGGCGTGGATTTTCCTCACGGGAGGCAATGCCTTTGGT
TCTTGGTGGGCCTATAACGAGCTCGGCTGGGGCGGTTGGTGGTTTTGGGATCCCGTTGAAAATGCTTCTTTTATTCCTTG
GCTAGTCGCCACTGCACTGGTGCATTCTTTAGTGCTGACCAGAAAGACCCAAGGCTTTGCCCTGACCACGCTATTTTTGT
GTATCTTGGCATTTTCACTGAGCTTACTCGGCAGCTTTTTGGTGCGCTCCGGCATAGTACAATCGGTACATGCCTTCGCG
GCAGATCCCACCAGAGGCATGTCAATACTCTGTCTTTTGGTGCTTTTTGTCGGTGCTGCGCTATTAATCTTTGCAATCAA
AGCGCCAACATTGAAACGAGAAGTCAGCCATAACCTATTGAGCAAAGAGACACTGTTACTCCTTGGAGCCATTGTATTAG
TAGTTGCAGCCTTTTCCGTTCTGCTGGGCACCTTTTATCCCCTGATCTACGAGCTGCTAGGCTTAGGCACGTTGTCGGTC
GGCGCACCTTACTTTAATGCGATTTTTGTCCCATTGACCTTTATCGCAGTGATCTTAATGGGCATCGCGCCGTTAATCGC
TTGGAAGGCGTCAACTCGCAAGCCACTCAAAGTATTAGCCTTGCCCTCTGTCGTCATTGTGATTATCGCGGCACTGATGA
GTGTTCGAACCCAAACCGATGGAGCCTTATTCCTATTCCTTGGCTGCACCAGCGCGCTGTTTTTGCTCTGCTGTCTTGGA
ATGAGTGTGTGTATGAAATCCCAAGCAATGACGCCTCCCAAGCCCGTCAAGCCTTCAGCGTCAAAACGCGCAAAACTAGC
CATGCTAGTCGGTCATTTTGGCGTGGCAGTCAGCATTATCGGCGCGACAGCAGTATCATTTTTTGAGCAGGAAGCCCTGC
TGCGTATGGGGCCTGGGCAAGGTAAACCACTTGCCGATTATGTGCTGGTGTACGAAAGCACAGAACCAGTAGAAACCCCA
AGTTTTACAGCGATTCAGGCCAATATCAGTATCCGCGATGCCAAGCAGGATGATCTTGTGCTGGGTTATCTGCATCCACA
GCGGCAAACCTTTAATAGTAATGGCATGGAAGTATCCCATGCGGGCATAGACCACGGTTTTTGGCGGGATCTCTATGTCT
CTATGGGACTACAACTGAGCGACACCGAATACCTGATCCGCATTAGTTATAAACCCTTAGCCACTTGGATCTGGCTGGGT
GCTTTATTGATGATGCTCGCTGGCGCGATTGCCGCTTGGCCAATCAAACAACCCCATAGAGTCCCACAAACAAAGGCGTT
GAATGTAACCAATTCACCAAGGGAGACAATGTCGTTATGA

Upstream 100 bases:

>100_bases
ATGCAGACGAGACAATCTAAATAGGCTTTAAGTGAATTAAAAATAATCTCACACCAATACACGCCATAAATAAATTAACC
ATGCAACACAGGAATGAGTA

Downstream 100 bases:

>100_bases
ACCCGCTGTTTCGCTCGCCCTATTTGAGCCTCTTATTTTGGTTGCTGTCACTGAGCCTCTGCTTTGGCGGCGCGACATTT
CTCGCCACGGCGCAGGAGGC

Product: cytochrome c-type biogenesis protein CcmF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 679; Mature: 679

Protein sequence:

>679_residues
MINMTPEIGHILLIISTVLALLSAIIHFFSIHQSQLYLIEFGNKLFNAMFISLLSALLCLIYSFISDDFSVAYVANHSNS
QLALGYKIAAVWGSHEGSMLFWVFAIALWGAIINCRQAGKFAGLGNADVQTDKAYFARLLAILALVILGFNLFLLFTSNP
FARLLPNIPIAGRDLNPILQDIGLILHPPMLFLGYVGLTVCFAAALASLLGGALVHRHLEYLRPWVLLAWIFLTGGNAFG
SWWAYNELGWGGWWFWDPVENASFIPWLVATALVHSLVLTRKTQGFALTTLFLCILAFSLSLLGSFLVRSGIVQSVHAFA
ADPTRGMSILCLLVLFVGAALLIFAIKAPTLKREVSHNLLSKETLLLLGAIVLVVAAFSVLLGTFYPLIYELLGLGTLSV
GAPYFNAIFVPLTFIAVILMGIAPLIAWKASTRKPLKVLALPSVVIVIIAALMSVRTQTDGALFLFLGCTSALFLLCCLG
MSVCMKSQAMTPPKPVKPSASKRAKLAMLVGHFGVAVSIIGATAVSFFEQEALLRMGPGQGKPLADYVLVYESTEPVETP
SFTAIQANISIRDAKQDDLVLGYLHPQRQTFNSNGMEVSHAGIDHGFWRDLYVSMGLQLSDTEYLIRISYKPLATWIWLG
ALLMMLAGAIAAWPIKQPHRVPQTKALNVTNSPRETMSL

Sequences:

>Translated_679_residues
MINMTPEIGHILLIISTVLALLSAIIHFFSIHQSQLYLIEFGNKLFNAMFISLLSALLCLIYSFISDDFSVAYVANHSNS
QLALGYKIAAVWGSHEGSMLFWVFAIALWGAIINCRQAGKFAGLGNADVQTDKAYFARLLAILALVILGFNLFLLFTSNP
FARLLPNIPIAGRDLNPILQDIGLILHPPMLFLGYVGLTVCFAAALASLLGGALVHRHLEYLRPWVLLAWIFLTGGNAFG
SWWAYNELGWGGWWFWDPVENASFIPWLVATALVHSLVLTRKTQGFALTTLFLCILAFSLSLLGSFLVRSGIVQSVHAFA
ADPTRGMSILCLLVLFVGAALLIFAIKAPTLKREVSHNLLSKETLLLLGAIVLVVAAFSVLLGTFYPLIYELLGLGTLSV
GAPYFNAIFVPLTFIAVILMGIAPLIAWKASTRKPLKVLALPSVVIVIIAALMSVRTQTDGALFLFLGCTSALFLLCCLG
MSVCMKSQAMTPPKPVKPSASKRAKLAMLVGHFGVAVSIIGATAVSFFEQEALLRMGPGQGKPLADYVLVYESTEPVETP
SFTAIQANISIRDAKQDDLVLGYLHPQRQTFNSNGMEVSHAGIDHGFWRDLYVSMGLQLSDTEYLIRISYKPLATWIWLG
ALLMMLAGAIAAWPIKQPHRVPQTKALNVTNSPRETMSL
>Mature_679_residues
MINMTPEIGHILLIISTVLALLSAIIHFFSIHQSQLYLIEFGNKLFNAMFISLLSALLCLIYSFISDDFSVAYVANHSNS
QLALGYKIAAVWGSHEGSMLFWVFAIALWGAIINCRQAGKFAGLGNADVQTDKAYFARLLAILALVILGFNLFLLFTSNP
FARLLPNIPIAGRDLNPILQDIGLILHPPMLFLGYVGLTVCFAAALASLLGGALVHRHLEYLRPWVLLAWIFLTGGNAFG
SWWAYNELGWGGWWFWDPVENASFIPWLVATALVHSLVLTRKTQGFALTTLFLCILAFSLSLLGSFLVRSGIVQSVHAFA
ADPTRGMSILCLLVLFVGAALLIFAIKAPTLKREVSHNLLSKETLLLLGAIVLVVAAFSVLLGTFYPLIYELLGLGTLSV
GAPYFNAIFVPLTFIAVILMGIAPLIAWKASTRKPLKVLALPSVVIVIIAALMSVRTQTDGALFLFLGCTSALFLLCCLG
MSVCMKSQAMTPPKPVKPSASKRAKLAMLVGHFGVAVSIIGATAVSFFEQEALLRMGPGQGKPLADYVLVYESTEPVETP
SFTAIQANISIRDAKQDDLVLGYLHPQRQTFNSNGMEVSHAGIDHGFWRDLYVSMGLQLSDTEYLIRISYKPLATWIWLG
ALLMMLAGAIAAWPIKQPHRVPQTKALNVTNSPRETMSL

Specific function: Required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG1138

COG function: function code O; Cytochrome c biogenesis factor

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ccmF/cycK/ccl1/nrfE/ccsA family [H]

Homologues:

Organism=Escherichia coli, GI1788524, Length=672, Percent_Identity=40.922619047619, Blast_Score=471, Evalue=1e-134,
Organism=Escherichia coli, GI1790511, Length=372, Percent_Identity=46.7741935483871, Blast_Score=267, Evalue=1e-72,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002541
- InterPro:   IPR003567
- InterPro:   IPR003568 [H]

Pfam domain/function: PF01578 Cytochrom_C_asm [H]

EC number: NA

Molecular weight: Translated: 74060; Mature: 74060

Theoretical pI: Translated: 8.86; Mature: 8.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MINMTPEIGHILLIISTVLALLSAIIHFFSIHQSQLYLIEFGNKLFNAMFISLLSALLCL
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHH
IYSFISDDFSVAYVANHSNSQLALGYKIAAVWGSHEGSMLFWVFAIALWGAIINCRQAGK
HHHHHCCCCEEEEEEECCCCEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCC
FAGLGNADVQTDKAYFARLLAILALVILGFNLFLLFTSNPFARLLPNIPIAGRDLNPILQ
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHEEEECCCCHHHHCCCCCCCCCCCHHHHH
DIGLILHPPMLFLGYVGLTVCFAAALASLLGGALVHRHLEYLRPWVLLAWIFLTGGNAFG
HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
SWWAYNELGWGGWWFWDPVENASFIPWLVATALVHSLVLTRKTQGFALTTLFLCILAFSL
CCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
SLLGSFLVRSGIVQSVHAFAADPTRGMSILCLLVLFVGAALLIFAIKAPTLKREVSHNLL
HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
SKETLLLLGAIVLVVAAFSVLLGTFYPLIYELLGLGTLSVGAPYFNAIFVPLTFIAVILM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCHHHHHHHHHHHHHHHHHH
GIAPLIAWKASTRKPLKVLALPSVVIVIIAALMSVRTQTDGALFLFLGCTSALFLLCCLG
HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHH
MSVCMKSQAMTPPKPVKPSASKRAKLAMLVGHFGVAVSIIGATAVSFFEQEALLRMGPGQ
HHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
GKPLADYVLVYESTEPVETPSFTAIQANISIRDAKQDDLVLGYLHPQRQTFNSNGMEVSH
CCCHHHEEEEECCCCCCCCCCCEEEEEEEEEECCCCCCEEEEEECCCHHCCCCCCCEEEE
AGIDHGFWRDLYVSMGLQLSDTEYLIRISYKPLATWIWLGALLMMLAGAIAAWPIKQPHR
CCCCCHHHHHHHHHCCCEECCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
VPQTKALNVTNSPRETMSL
CCCCCEECCCCCCHHHCCC
>Mature Secondary Structure
MINMTPEIGHILLIISTVLALLSAIIHFFSIHQSQLYLIEFGNKLFNAMFISLLSALLCL
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHH
IYSFISDDFSVAYVANHSNSQLALGYKIAAVWGSHEGSMLFWVFAIALWGAIINCRQAGK
HHHHHCCCCEEEEEEECCCCEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCC
FAGLGNADVQTDKAYFARLLAILALVILGFNLFLLFTSNPFARLLPNIPIAGRDLNPILQ
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHEEEECCCCHHHHCCCCCCCCCCCHHHHH
DIGLILHPPMLFLGYVGLTVCFAAALASLLGGALVHRHLEYLRPWVLLAWIFLTGGNAFG
HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
SWWAYNELGWGGWWFWDPVENASFIPWLVATALVHSLVLTRKTQGFALTTLFLCILAFSL
CCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
SLLGSFLVRSGIVQSVHAFAADPTRGMSILCLLVLFVGAALLIFAIKAPTLKREVSHNLL
HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
SKETLLLLGAIVLVVAAFSVLLGTFYPLIYELLGLGTLSVGAPYFNAIFVPLTFIAVILM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCHHHHHHHHHHHHHHHHHH
GIAPLIAWKASTRKPLKVLALPSVVIVIIAALMSVRTQTDGALFLFLGCTSALFLLCCLG
HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHH
MSVCMKSQAMTPPKPVKPSASKRAKLAMLVGHFGVAVSIIGATAVSFFEQEALLRMGPGQ
HHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
GKPLADYVLVYESTEPVETPSFTAIQANISIRDAKQDDLVLGYLHPQRQTFNSNGMEVSH
CCCHHHEEEEECCCCCCCCCCCEEEEEEEEEECCCCCCEEEEEECCCHHCCCCCCCEEEE
AGIDHGFWRDLYVSMGLQLSDTEYLIRISYKPLATWIWLGALLMMLAGAIAAWPIKQPHR
CCCCCHHHHHHHHHCCCEECCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
VPQTKALNVTNSPRETMSL
CCCCCEECCCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9278503; 7635817 [H]