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The map label for this gene is ppdD [C]

Identifier: 117918878

GI number: 117918878

Start: 480325

End: 480753

Strand: Reverse

Name: ppdD [C]

Synonym: Shewana3_0421

Alternate gene names: 117918878

Gene position: 480753-480325 (Counterclockwise)

Preceding gene: 117918879

Following gene: 117918876

Centisome position: 9.67

GC content: 41.49

Gene sequence:

>429_bases
ATGAAAGGTATCAAAATGAATAAGAATGCTCAGGGTTTTACCTTGATCGAATTAATGATTGTAGTAGCCATTATCGGTAT
TTTGGCTGCAGTGGCATTACCTGCTTATCGTGAATATGTTGCAACCTCGCATGGTGGTGCATCAATGAAAGGCCTTGCAG
GATATGTAACTAAGGCCCAAGCATGTATCCAAACAGGTGTCGGATGCACAACTCTCGGAACTGAAATTACCGCTGACCCA
AAAGTTGATGCAGACCCAGCAGTTACAGAAGCAACTGGAACAGATTTAACATATGATGACGGTACTTGTACTGTTACAGC
TACAATCGGTGCTACTGGCGGTGTATCTTATGCTGCAGACACTAAAGATGCTAATAAAGCAACCAAAAAACAATGTGAAG
AAGGTGCTGGATTAAAAGCTAGTAGTTAA

Upstream 100 bases:

>100_bases
CGCTAGCCAAAAAACCAGCAATTCATTCAAGGCAATTAAGATAAGCAGCCGAAACGAACACAATCGATAAATGACACTTT
GCACTGTATTGGAGTTAAAA

Downstream 100 bases:

>100_bases
TCTTATTGTTTTATAGAAAGCCCCTTTTGGGGCTTTTTTATTTTTATCAATTAATTATCCCAGTTAACCATAATCTTGGA
TAAAGTTGCTGATTAAGCGC

Product: methylation site containing protein

Products: NA

Alternate protein names: General Secretion Pathway Protein; Methylation

Number of amino acids: Translated: 142; Mature: 142

Protein sequence:

>142_residues
MKGIKMNKNAQGFTLIELMIVVAIIGILAAVALPAYREYVATSHGGASMKGLAGYVTKAQACIQTGVGCTTLGTEITADP
KVDADPAVTEATGTDLTYDDGTCTVTATIGATGGVSYAADTKDANKATKKQCEEGAGLKASS

Sequences:

>Translated_142_residues
MKGIKMNKNAQGFTLIELMIVVAIIGILAAVALPAYREYVATSHGGASMKGLAGYVTKAQACIQTGVGCTTLGTEITADP
KVDADPAVTEATGTDLTYDDGTCTVTATIGATGGVSYAADTKDANKATKKQCEEGAGLKASS
>Mature_142_residues
MKGIKMNKNAQGFTLIELMIVVAIIGILAAVALPAYREYVATSHGGASMKGLAGYVTKAQACIQTGVGCTTLGTEITADP
KVDADPAVTEATGTDLTYDDGTCTVTATIGATGGVSYAADTKDANKATKKQCEEGAGLKASS

Specific function: Not Yet Known. [C]

COG id: COG4969

COG function: function code NU; Tfp pilus assembly protein, major pilin PilA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 14339; Mature: 14339

Theoretical pI: Translated: 5.10; Mature: 5.10

Prosite motif: PS00409 PROKAR_NTER_METHYL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKGIKMNKNAQGFTLIELMIVVAIIGILAAVALPAYREYVATSHGGASMKGLAGYVTKAQ
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
ACIQTGVGCTTLGTEITADPKVDADPAVTEATGTDLTYDDGTCTVTATIGATGGVSYAAD
HHHHHCCCCEECCCCCCCCCCCCCCCCEECCCCCCEEECCCCEEEEEECCCCCCCCCCCC
TKDANKATKKQCEEGAGLKASS
CCCCHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MKGIKMNKNAQGFTLIELMIVVAIIGILAAVALPAYREYVATSHGGASMKGLAGYVTKAQ
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
ACIQTGVGCTTLGTEITADPKVDADPAVTEATGTDLTYDDGTCTVTATIGATGGVSYAAD
HHHHHCCCCEECCCCCCCCCCCCCCCCEECCCCCCEEECCCCEEEEEECCCCCCCCCCCC
TKDANKATKKQCEEGAGLKASS
CCCCHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA