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The map label for this gene is ydcN [H]

Identifier: 117918776

GI number: 117918776

Start: 354235

End: 354810

Strand: Reverse

Name: ydcN [H]

Synonym: Shewana3_0319

Alternate gene names: 117918776

Gene position: 354810-354235 (Counterclockwise)

Preceding gene: 117918778

Following gene: 117918775

Centisome position: 7.14

GC content: 53.82

Gene sequence:

>576_bases
ATGCAGACCATCAACAGCTATCTTGCCGCGACCCTAAAACAACTGCGCAGCCAAAAGGGTTGGAGCTTAGATAAAGCGGC
ACTCGAGACAGGCGTAAGCAAGGCCATGATAGGCCAGATTGAGCGCGGCGAATCTAGCCCCACCATTGCTACCCTGTGGA
AAATCGCCAGCGGTTTTAATATCTCACTCTCGACTTTTCTGGAGCCGACACCCGAGAGCCAAGGCGCCCTCTTTCGTAAC
GCCGATGCATTACGCCAAAAGCCAGCAACCGACGGCATGTTAGTGGCGTCGCTATTTCCCTTTGAGCCACGCTTTGGTTT
TGAGATGTTTGAACTCACCCTATTGCCGCACTATGAGCGCCTCTCCGAGCCCCATGAGGCGGGTGTGACCGAGCATGTGA
TCGTGCTCAGCGGCAACATGGAAGTGTTAGTCGATGGCCAGTGGCAGCCATTACAACAGGGCGAAGCCGTGCGCTTTGCC
GCCGATAAACCCCATGGTTACCGTAACTTAAGCGATCTACCCGTAGTATTTCATGATCTAATCCACTACCACAGAGCATC
GTCTACCGCGGAGTAA

Upstream 100 bases:

>100_bases
TGATCATCGAACCACTCATCGTGCGCTATAACGCACACAATGGACAAGATAGCACTTGTGCGTTATAACGTACAAATAAT
TTTTTAAGCGTCAGAATCTA

Downstream 100 bases:

>100_bases
TGCCGACAAGCCAAGTGCCCAACAGATTGCCGCTTGCGCCCGCCAATCCATTAGAATAAACTTATTGAAACTTTTCTAAT
CATAGAGGCAAAGCTATGTT

Product: XRE family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 191; Mature: 191

Protein sequence:

>191_residues
MQTINSYLAATLKQLRSQKGWSLDKAALETGVSKAMIGQIERGESSPTIATLWKIASGFNISLSTFLEPTPESQGALFRN
ADALRQKPATDGMLVASLFPFEPRFGFEMFELTLLPHYERLSEPHEAGVTEHVIVLSGNMEVLVDGQWQPLQQGEAVRFA
ADKPHGYRNLSDLPVVFHDLIHYHRASSTAE

Sequences:

>Translated_191_residues
MQTINSYLAATLKQLRSQKGWSLDKAALETGVSKAMIGQIERGESSPTIATLWKIASGFNISLSTFLEPTPESQGALFRN
ADALRQKPATDGMLVASLFPFEPRFGFEMFELTLLPHYERLSEPHEAGVTEHVIVLSGNMEVLVDGQWQPLQQGEAVRFA
ADKPHGYRNLSDLPVVFHDLIHYHRASSTAE
>Mature_191_residues
MQTINSYLAATLKQLRSQKGWSLDKAALETGVSKAMIGQIERGESSPTIATLWKIASGFNISLSTFLEPTPESQGALFRN
ADALRQKPATDGMLVASLFPFEPRFGFEMFELTLLPHYERLSEPHEAGVTEHVIVLSGNMEVLVDGQWQPLQQGEAVRFA
ADKPHGYRNLSDLPVVFHDLIHYHRASSTAE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787704, Length=186, Percent_Identity=48.9247311827957, Blast_Score=189, Evalue=8e-50,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013096
- InterPro:   IPR011051
- InterPro:   IPR001387
- InterPro:   IPR010982
- InterPro:   IPR014710 [H]

Pfam domain/function: PF07883 Cupin_2; PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 21195; Mature: 21195

Theoretical pI: Translated: 5.87; Mature: 5.87

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQTINSYLAATLKQLRSQKGWSLDKAALETGVSKAMIGQIERGESSPTIATLWKIASGFN
CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCHHHHHHHHHHCCCCCCHHHHHHHHHCCCC
ISLSTFLEPTPESQGALFRNADALRQKPATDGMLVASLFPFEPRFGFEMFELTLLPHYER
EEEHEEECCCCCCCCCCHHCCHHHHCCCCCCCEEEEEECCCCCCCCCEEEEEEECCCHHH
LSEPHEAGVTEHVIVLSGNMEVLVDGQWQPLQQGEAVRFAADKPHGYRNLSDLPVVFHDL
HCCCCCCCCCEEEEEEECCEEEEECCCCCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHH
IHYHRASSTAE
HHHHHCCCCCC
>Mature Secondary Structure
MQTINSYLAATLKQLRSQKGWSLDKAALETGVSKAMIGQIERGESSPTIATLWKIASGFN
CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCHHHHHHHHHHCCCCCCHHHHHHHHHCCCC
ISLSTFLEPTPESQGALFRNADALRQKPATDGMLVASLFPFEPRFGFEMFELTLLPHYER
EEEHEEECCCCCCCCCCHHCCHHHHCCCCCCCEEEEEECCCCCCCCCEEEEEEECCCHHH
LSEPHEAGVTEHVIVLSGNMEVLVDGQWQPLQQGEAVRFAADKPHGYRNLSDLPVVFHDL
HCCCCCCCCCEEEEEEECCEEEEECCCCCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHH
IHYHRASSTAE
HHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]