| Definition | Shewanella sp. ANA-3 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008577 |
| Length | 4,972,204 |
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The map label for this gene is iutA [H]
Identifier: 117918756
GI number: 117918756
Start: 331825
End: 334062
Strand: Reverse
Name: iutA [H]
Synonym: Shewana3_0299
Alternate gene names: 117918756
Gene position: 334062-331825 (Counterclockwise)
Preceding gene: 117918757
Following gene: 117918755
Centisome position: 6.72
GC content: 52.06
Gene sequence:
>2238_bases ATGCCTAAGTCTATGGGGCCGATAAGCCTAGTCGCCGCCGCAGTTATCTGCCAACTGGGGCTTATTAATGTGGCGACAGC CGCTGAAAACGAGATGGAGCGCATGGTGGTCTCCGCCACCCGTTCACCTACCCAAATCAGCGATCTATCCAGCACAGTGT GGATCATTGATGAAGCCAGCATTCGCGAGCAAACCGATAGCGGCAAAGGGATTAAGGAAATGCTCGCCGCCTTAGTGCCG TCGATGGATGTGTCCAGCCAAGGGCGCACCAACTTTGGCCAGAATATTCGCGGTCGCGCCATGGTGGTATTAATCGATGG CGTGTCGATGAACACCTCTCGCAGCATCAGCCGTCAGCTAGACAGTATCGATCCATTCAATATTGCGCGCGTCGAGGTAC TGGCTGGCGCGTCGGCTATCTATGGTGGTGGCGCACTGGGCGGTGCCATTAATATCGTCACTAAAAAAGCGGCTGACAGC AGTGATACCTTCGAGGCCGAAGCAGGATTTAAGTCCGGCTTTAATAGCAGTGATGATTTAGATTATCGCACCGCGCTGGC GGTTACCGGGGGCAGTGATTCGCTTAAGGGACGCTTCAGCGCCGCTTGGCAAGAAAACGGCCAGTGGTTTGATGGCAGTG ACAATCCTGTGATGCTGGATATCTCGCAAACCGGAATGCAGTACACCCAAGGTTATGATTTGATGGCGAATATGGATTGG CAGCTTGCCAATGACGCCAGCCTCAGCGCCATGGCGCAATACTATCGCAATGGTTCAGACGAAGAACATGGCCTGTATAT GGGTGAGAACTTCTCCGGTGTCACGGGCGATGCCTCAGTGCTGGAAACCCGTAAAGGATTGGACGCTGACCGCAGCCCCG CCACCGAGCGTACTTTACTGAATCTGTCCTACTCCCAGGATGAGTTTCTGGGTCAAACCCTGTATTTACAAGGCTTTTAT CGCAAAGAGAATCTGGATTTCCACCCGTTCCCCTATGTCAATGAAACCAGTGGCGTCTACAACTTCTCTGCATCGGCCCA AAACACCAGCATCTATGGTTTGAAAGCGGTCGTAGAATCCAAACCCGTCGATAGCCTCACACTCACTTGGGGACTGGATT GGGATAAAGAAAGTTTTGATTCGAACCAAATGAGCTTCGACCTCAATGCCGCCAACCAACACGGCGGCTTAGTGATGCGC GAGCTGTTCACTACCGGCCGTTATGTCGACTTTACGGTCGAGTCTATTGCGGCATTTATCCAAAGCAGTTGGGAGATGAA TAGCTTTTTGGTGCTAAACGCTGGCTATCGTTATCAACACATGGAAAACAGCGTTGATGATTTTATCGGTTATAACCAGC AGGTGGCGATCGCCTCCGGCAAGGCTAAGGGGGCCGATGCCATTAAAGGCGGCAGCACCGACTATAACATCGGCTTAGTC AACCTTGGCTTGGTGGCCAAGTTGAGCCAAGACCAACAACTCTGGCTTGCCTATTCCCAAGGCTTTGAGCTGCCAGACCT GTCGAAATACTATGGCCGCGGCACCTACAAGGCCGATGCCGATGGTTACTTACAGCTGCAAAATAGCATCAATATCAATG ATACCCGTCTTGACGGGATCAAAACCGACTCCATGGAGCTGGGATGGCGTTATCTTGCAGACCGTTGGCAGGCGCAAGCC AGCGTCTACTATGCCGTGTCTGACAAGGTCATTGAGGTTAACAGCAAAGATCTGACCATCAATGTCAAAGACCAAGATAA GCGCAGCTATGGCCTAGAGGCACAGCTTAACTTTGATATCACCTCAGATTGGCAAGTCGGCACCAACCTGCATCTGGTAC GCAGTGAAGTGAAGGATGAAGATCGCTGGAACGATGAAACCGTCACTTATGCCTCACCCTCTAAGGCCACTGCTTTTATT GGCTGGCGCGGCGAGACACAGAAGATCCGTTTACAGGCAGAGCACAGTTTTAGCGCCGAATCTGACTATCGCTTCAAAAC CGACGATGGCCTAGCGAGTGAGCTTGATAGCTACACAACGCTGGATTTACTGGGCTCTATCGATTTACCCGTCGGTACCT TGAGCTACGGCATCGAAAACCTGCTCGATAAAGACTACAGCACCCTGTGGGGCCAAAGAGCTGTGTACTTCTACAGCCCA ACCTACGGCCCTGAGTCTATGTTCGACTACCACGGCCGTGGCCGCACCTTTGCCCTCAATTATCAACTGAGTTGGTGA
Upstream 100 bases:
>100_bases ATTCAAATCATTAAAAACGCTTTCTGGGTCGCGAGAAAATGGCACCACAATGCTGTCCTTTTGGCTTCTCATGTACCTGT TGTTTTTGATGGAGAATGCT
Downstream 100 bases:
>100_bases TAACAGGCTAAAAGGCATCAATCACTTGTGTCAGCCTTCCCTTAAGGCAGGCTGAGCAAATGCCACAAACAAAAAACGGT CCCCAAGTGGACCGTTTTTT
Product: TonB-dependent siderophore receptor
Products: NA
Alternate protein names: Cloacin receptor [H]
Number of amino acids: Translated: 745; Mature: 744
Protein sequence:
>745_residues MPKSMGPISLVAAAVICQLGLINVATAAENEMERMVVSATRSPTQISDLSSTVWIIDEASIREQTDSGKGIKEMLAALVP SMDVSSQGRTNFGQNIRGRAMVVLIDGVSMNTSRSISRQLDSIDPFNIARVEVLAGASAIYGGGALGGAINIVTKKAADS SDTFEAEAGFKSGFNSSDDLDYRTALAVTGGSDSLKGRFSAAWQENGQWFDGSDNPVMLDISQTGMQYTQGYDLMANMDW QLANDASLSAMAQYYRNGSDEEHGLYMGENFSGVTGDASVLETRKGLDADRSPATERTLLNLSYSQDEFLGQTLYLQGFY RKENLDFHPFPYVNETSGVYNFSASAQNTSIYGLKAVVESKPVDSLTLTWGLDWDKESFDSNQMSFDLNAANQHGGLVMR ELFTTGRYVDFTVESIAAFIQSSWEMNSFLVLNAGYRYQHMENSVDDFIGYNQQVAIASGKAKGADAIKGGSTDYNIGLV NLGLVAKLSQDQQLWLAYSQGFELPDLSKYYGRGTYKADADGYLQLQNSININDTRLDGIKTDSMELGWRYLADRWQAQA SVYYAVSDKVIEVNSKDLTINVKDQDKRSYGLEAQLNFDITSDWQVGTNLHLVRSEVKDEDRWNDETVTYASPSKATAFI GWRGETQKIRLQAEHSFSAESDYRFKTDDGLASELDSYTTLDLLGSIDLPVGTLSYGIENLLDKDYSTLWGQRAVYFYSP TYGPESMFDYHGRGRTFALNYQLSW
Sequences:
>Translated_745_residues MPKSMGPISLVAAAVICQLGLINVATAAENEMERMVVSATRSPTQISDLSSTVWIIDEASIREQTDSGKGIKEMLAALVP SMDVSSQGRTNFGQNIRGRAMVVLIDGVSMNTSRSISRQLDSIDPFNIARVEVLAGASAIYGGGALGGAINIVTKKAADS SDTFEAEAGFKSGFNSSDDLDYRTALAVTGGSDSLKGRFSAAWQENGQWFDGSDNPVMLDISQTGMQYTQGYDLMANMDW QLANDASLSAMAQYYRNGSDEEHGLYMGENFSGVTGDASVLETRKGLDADRSPATERTLLNLSYSQDEFLGQTLYLQGFY RKENLDFHPFPYVNETSGVYNFSASAQNTSIYGLKAVVESKPVDSLTLTWGLDWDKESFDSNQMSFDLNAANQHGGLVMR ELFTTGRYVDFTVESIAAFIQSSWEMNSFLVLNAGYRYQHMENSVDDFIGYNQQVAIASGKAKGADAIKGGSTDYNIGLV NLGLVAKLSQDQQLWLAYSQGFELPDLSKYYGRGTYKADADGYLQLQNSININDTRLDGIKTDSMELGWRYLADRWQAQA SVYYAVSDKVIEVNSKDLTINVKDQDKRSYGLEAQLNFDITSDWQVGTNLHLVRSEVKDEDRWNDETVTYASPSKATAFI GWRGETQKIRLQAEHSFSAESDYRFKTDDGLASELDSYTTLDLLGSIDLPVGTLSYGIENLLDKDYSTLWGQRAVYFYSP TYGPESMFDYHGRGRTFALNYQLSW >Mature_744_residues PKSMGPISLVAAAVICQLGLINVATAAENEMERMVVSATRSPTQISDLSSTVWIIDEASIREQTDSGKGIKEMLAALVPS MDVSSQGRTNFGQNIRGRAMVVLIDGVSMNTSRSISRQLDSIDPFNIARVEVLAGASAIYGGGALGGAINIVTKKAADSS DTFEAEAGFKSGFNSSDDLDYRTALAVTGGSDSLKGRFSAAWQENGQWFDGSDNPVMLDISQTGMQYTQGYDLMANMDWQ LANDASLSAMAQYYRNGSDEEHGLYMGENFSGVTGDASVLETRKGLDADRSPATERTLLNLSYSQDEFLGQTLYLQGFYR KENLDFHPFPYVNETSGVYNFSASAQNTSIYGLKAVVESKPVDSLTLTWGLDWDKESFDSNQMSFDLNAANQHGGLVMRE LFTTGRYVDFTVESIAAFIQSSWEMNSFLVLNAGYRYQHMENSVDDFIGYNQQVAIASGKAKGADAIKGGSTDYNIGLVN LGLVAKLSQDQQLWLAYSQGFELPDLSKYYGRGTYKADADGYLQLQNSININDTRLDGIKTDSMELGWRYLADRWQAQAS VYYAVSDKVIEVNSKDLTINVKDQDKRSYGLEAQLNFDITSDWQVGTNLHLVRSEVKDEDRWNDETVTYASPSKATAFIG WRGETQKIRLQAEHSFSAESDYRFKTDDGLASELDSYTTLDLLGSIDLPVGTLSYGIENLLDKDYSTLWGQRAVYFYSPT YGPESMFDYHGRGRTFALNYQLSW
Specific function: Receptor for cloacin DF13/aerobactin [H]
COG id: COG1629
COG function: function code P; Outer membrane receptor proteins, mostly Fe transport
Gene ontology:
Cell location: Cell outer membrane [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
Organism=Escherichia coli, GI1788478, Length=157, Percent_Identity=28.6624203821656, Blast_Score=66, Evalue=6e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010916 - InterPro: IPR010917 - InterPro: IPR010105 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 82334; Mature: 82203
Theoretical pI: Translated: 4.32; Mature: 4.32
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPKSMGPISLVAAAVICQLGLINVATAAENEMERMVVSATRSPTQISDLSSTVWIIDEAS CCCCCCHHHHHHHHHHHHHCHHHEEHHHHHHHHHHHHHCCCCCCCHHCCCCEEEEEECCH IREQTDSGKGIKEMLAALVPSMDVSSQGRTNFGQNIRGRAMVVLIDGVSMNTSRSISRQL HHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHH DSIDPFNIARVEVLAGASAIYGGGALGGAINIVTKKAADSSDTFEAEAGFKSGFNSSDDL CCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEECCCCCCCCEECCCCHHCCCCCCCCC DYRTALAVTGGSDSLKGRFSAAWQENGQWFDGSDNPVMLDISQTGMQYTQGYDLMANMDW CEEEEEEEECCCCCCCCCEEEHHHCCCCEECCCCCCEEEEEHHCCCHHHCCCEEEECCCE QLANDASLSAMAQYYRNGSDEEHGLYMGENFSGVTGDASVLETRKGLDADRSPATERTLL EECCCCHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCHHHHHHHCCCCCCCCCCCCEEEE NLSYSQDEFLGQTLYLQGFYRKENLDFHPFPYVNETSGVYNFSASAQNTSIYGLKAVVES EECCCCHHHCCCEEEEEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCEEEEEEEECCC KPVDSLTLTWGLDWDKESFDSNQMSFDLNAANQHGGLVMRELFTTGRYVDFTVESIAAFI CCCCEEEEEEECCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHCCCEEEEEHHHHHHHH QSSWEMNSFLVLNAGYRYQHMENSVDDFIGYNQQVAIASGKAKGADAIKGGSTDYNIGLV HCCCCCCEEEEEECCCCCHHHHCCHHHHHCCCCEEEEECCCCCCCCCCCCCCCCEEEEEE NLGLVAKLSQDQQLWLAYSQGFELPDLSKYYGRGTYKADADGYLQLQNSININDTRLDGI EECEEEECCCCCEEEEEEECCCCCCCCHHHHCCCCEECCCCCEEEEECCCCCCCEEECCE KTDSMELGWRYLADRWQAQASVYYAVSDKVIEVNSKDLTINVKDQDKRSYGLEAQLNFDI ECCCHHHHHHHHHHHHHCCEEEEEEECCEEEEECCCEEEEEECCCCCCCCCCEEEEEEEE TSDWQVGTNLHLVRSEVKDEDRWNDETVTYASPSKATAFIGWRGETQKIRLQAEHSFSAE CCCCCCCCCEEEHHHHHCCCCCCCCCEEEEECCCCCEEEEEECCCCEEEEEEECCCCCCC SDYRFKTDDGLASELDSYTTLDLLGSIDLPVGTLSYGIENLLDKDYSTLWGQRAVYFYSP CCCEEECCCCHHHHHCCCEEEHHHCCCCCCHHHHHHHHHHHHCCHHHHHCCCCEEEEECC TYGPESMFDYHGRGRTFALNYQLSW CCCCHHHHHHCCCCEEEEEEEEECC >Mature Secondary Structure PKSMGPISLVAAAVICQLGLINVATAAENEMERMVVSATRSPTQISDLSSTVWIIDEAS CCCCCHHHHHHHHHHHHHCHHHEEHHHHHHHHHHHHHCCCCCCCHHCCCCEEEEEECCH IREQTDSGKGIKEMLAALVPSMDVSSQGRTNFGQNIRGRAMVVLIDGVSMNTSRSISRQL HHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHH DSIDPFNIARVEVLAGASAIYGGGALGGAINIVTKKAADSSDTFEAEAGFKSGFNSSDDL CCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEECCCCCCCCEECCCCHHCCCCCCCCC DYRTALAVTGGSDSLKGRFSAAWQENGQWFDGSDNPVMLDISQTGMQYTQGYDLMANMDW CEEEEEEEECCCCCCCCCEEEHHHCCCCEECCCCCCEEEEEHHCCCHHHCCCEEEECCCE QLANDASLSAMAQYYRNGSDEEHGLYMGENFSGVTGDASVLETRKGLDADRSPATERTLL EECCCCHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCHHHHHHHCCCCCCCCCCCCEEEE NLSYSQDEFLGQTLYLQGFYRKENLDFHPFPYVNETSGVYNFSASAQNTSIYGLKAVVES EECCCCHHHCCCEEEEEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCEEEEEEEECCC KPVDSLTLTWGLDWDKESFDSNQMSFDLNAANQHGGLVMRELFTTGRYVDFTVESIAAFI CCCCEEEEEEECCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHCCCEEEEEHHHHHHHH QSSWEMNSFLVLNAGYRYQHMENSVDDFIGYNQQVAIASGKAKGADAIKGGSTDYNIGLV HCCCCCCEEEEEECCCCCHHHHCCHHHHHCCCCEEEEECCCCCCCCCCCCCCCCEEEEEE NLGLVAKLSQDQQLWLAYSQGFELPDLSKYYGRGTYKADADGYLQLQNSININDTRLDGI EECEEEECCCCCEEEEEEECCCCCCCCHHHHCCCCEECCCCCEEEEECCCCCCCEEECCE KTDSMELGWRYLADRWQAQASVYYAVSDKVIEVNSKDLTINVKDQDKRSYGLEAQLNFDI ECCCHHHHHHHHHHHHHCCEEEEEEECCEEEEECCCEEEEEECCCCCCCCCCEEEEEEEE TSDWQVGTNLHLVRSEVKDEDRWNDETVTYASPSKATAFIGWRGETQKIRLQAEHSFSAE CCCCCCCCCEEEHHHHHCCCCCCCCCEEEEECCCCCEEEEEECCCCEEEEEEECCCCCCC SDYRFKTDDGLASELDSYTTLDLLGSIDLPVGTLSYGIENLLDKDYSTLWGQRAVYFYSP CCCEEECCCCHHHHHCCCEEEHHHCCCCCCHHHHHHHHHHHHCCHHHHHCCCCEEEEECC TYGPESMFDYHGRGRTFALNYQLSW CCCCHHHHHHCCCCEEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA