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The map label for this gene is ccmB [H]

Identifier: 117918688

GI number: 117918688

Start: 259531

End: 260217

Strand: Reverse

Name: ccmB [H]

Synonym: Shewana3_0230

Alternate gene names: 117918688

Gene position: 260217-259531 (Counterclockwise)

Preceding gene: 117918689

Following gene: 117918687

Centisome position: 5.23

GC content: 47.89

Gene sequence:

>687_bases
ATGAAAAGAGGCATCAGCTTTACCCAAGCGTTTTTAACATTACTACAGCGGGATCTAAAAATCGCCATTCGTCACCGCGG
TGATATCTTTAATCCCTTGTTATTCTTCATCATGGTTGTGACTCTATTCCCTTTGGGAATTGGTCCTGAACCACAAATGC
TAGCCCGTATTGCTCCTGGGATTATTTGGGTTGCGGCATTACTGGCGTCTATGCTTTCACTCGAGCGTCTATTTAAAGCC
GACTTTAGCGATGGCAGCTTAGAGCAAATGCTACTCAGCCCACAGCCACTCTCGGTATTGGTATTGGCCAAAGTATTAGC
CCACTGGCTACTGACTGGCGTGCCACTGATTATTATCGCGCCCTTGCTGGCGGTGCTGCTCAATTTAGACGCCAACAGTT
ATGGTGCGCTGATTGCAACACTCGCACTGGGCACACCAGTATTATCCCTCTTAGGCGCAATTGGTGTGGCCCTAACCGTG
GGTCTGCGTAAAGGCGGCGTGTTACTGAGTCTGCTTATTTTACCACTTTATATTCCTGTGCTGATTTTCGCGACCAGCGC
CATAGATGCTGCAGGAATGAATTTACCCTATGATGGTCAGCTCGCTATAATTGGCGCCATGTTGATCGGTTCGTTAACCT
TAGCACCCTTTGCAATTGGTGCATCTCTGCGAGTGAGTACTAACTAA

Upstream 100 bases:

>100_bases
GCTGCGTGATCCTCACCACTCACCAAGATATGGGCATTATCAAAGATGATAGGCTTCGTAAAATTCGTCTAGATTATCGC
TTCGTATAAGGTTTGGCATA

Downstream 100 bases:

>100_bases
AATGTGGAAATGGTTACACCCTTACGCGGATCCTGAGCGCGCTTACAAATTATCAGGAACATTATTTCCATGGTTTGCCA
CCTTAGCCTGCCTTTTTATT

Product: heme exporter protein CcmB

Products: NA

Alternate protein names: Cytochrome c-type biogenesis protein CcmB [H]

Number of amino acids: Translated: 228; Mature: 228

Protein sequence:

>228_residues
MKRGISFTQAFLTLLQRDLKIAIRHRGDIFNPLLFFIMVVTLFPLGIGPEPQMLARIAPGIIWVAALLASMLSLERLFKA
DFSDGSLEQMLLSPQPLSVLVLAKVLAHWLLTGVPLIIIAPLLAVLLNLDANSYGALIATLALGTPVLSLLGAIGVALTV
GLRKGGVLLSLLILPLYIPVLIFATSAIDAAGMNLPYDGQLAIIGAMLIGSLTLAPFAIGASLRVSTN

Sequences:

>Translated_228_residues
MKRGISFTQAFLTLLQRDLKIAIRHRGDIFNPLLFFIMVVTLFPLGIGPEPQMLARIAPGIIWVAALLASMLSLERLFKA
DFSDGSLEQMLLSPQPLSVLVLAKVLAHWLLTGVPLIIIAPLLAVLLNLDANSYGALIATLALGTPVLSLLGAIGVALTV
GLRKGGVLLSLLILPLYIPVLIFATSAIDAAGMNLPYDGQLAIIGAMLIGSLTLAPFAIGASLRVSTN
>Mature_228_residues
MKRGISFTQAFLTLLQRDLKIAIRHRGDIFNPLLFFIMVVTLFPLGIGPEPQMLARIAPGIIWVAALLASMLSLERLFKA
DFSDGSLEQMLLSPQPLSVLVLAKVLAHWLLTGVPLIIIAPLLAVLLNLDANSYGALIATLALGTPVLSLLGAIGVALTV
GLRKGGVLLSLLILPLYIPVLIFATSAIDAAGMNLPYDGQLAIIGAMLIGSLTLAPFAIGASLRVSTN

Specific function: Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes [H]

COG id: COG2386

COG function: function code O; ABC-type transport system involved in cytochrome c biogenesis, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CcmB/CycW/HelB family [H]

Homologues:

Organism=Escherichia coli, GI1788528, Length=218, Percent_Identity=61.9266055045872, Blast_Score=227, Evalue=6e-61,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003544 [H]

Pfam domain/function: PF03379 CcmB [H]

EC number: NA

Molecular weight: Translated: 24096; Mature: 24096

Theoretical pI: Translated: 10.00; Mature: 10.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRGISFTQAFLTLLQRDLKIAIRHRGDIFNPLLFFIMVVTLFPLGIGPEPQMLARIAPG
CCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
IIWVAALLASMLSLERLFKADFSDGSLEQMLLSPQPLSVLVLAKVLAHWLLTGVPLIIIA
HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHHHHHH
PLLAVLLNLDANSYGALIATLALGTPVLSLLGAIGVALTVGLRKGGVLLSLLILPLYIPV
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
LIFATSAIDAAGMNLPYDGQLAIIGAMLIGSLTLAPFAIGASLRVSTN
HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEECCC
>Mature Secondary Structure
MKRGISFTQAFLTLLQRDLKIAIRHRGDIFNPLLFFIMVVTLFPLGIGPEPQMLARIAPG
CCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
IIWVAALLASMLSLERLFKADFSDGSLEQMLLSPQPLSVLVLAKVLAHWLLTGVPLIIIA
HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHHHHHH
PLLAVLLNLDANSYGALIATLALGTPVLSLLGAIGVALTVGLRKGGVLLSLLILPLYIPV
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
LIFATSAIDAAGMNLPYDGQLAIIGAMLIGSLTLAPFAIGASLRVSTN
HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]