Click here to switch to the map view.

The map label for this gene is ccmC [H]

Identifier: 117918687

GI number: 117918687

Start: 258783

End: 259529

Strand: Reverse

Name: ccmC [H]

Synonym: Shewana3_0229

Alternate gene names: 117918687

Gene position: 259529-258783 (Counterclockwise)

Preceding gene: 117918688

Following gene: 117918686

Centisome position: 5.22

GC content: 47.52

Gene sequence:

>747_bases
ATGTGGAAATGGTTACACCCTTACGCGGATCCTGAGCGCGCTTACAAATTATCAGGAACATTATTTCCATGGTTTGCCAC
CTTAGCCTGCCTTTTTATTGCCGTCGGCACGGTATGGGGATTAATGTTTGCTCCAACAGATTATCAACAGGGCGACAGCT
ACCGGATTATCTTTATCCATGTTCCAGCAGCCTCAATGTCAATGGCCGCCTACATGGGTATGGCGACAGCCGCATTTATC
GGCCTCGTATGGCAAATTAAACTGGCTGATTGGGCCGCCGCATCCATTGCACCTATTGGTGCCGTGATTACCTTTATCGC
CCTCTTTACTGGTGCGACTTGGGGTAAGCCCATGTGGGGGACTTGGTGGGTATGGGATGCGCGTCTAACGTCTGAATTAG
TTCTGCTATTCCTCTACTTGGGCGTTATCTCGCTCTATGCTTCCTTCGAAGACAAAGTGCTGGCAGCACGTGCAGCAGGG
ATCTTAGCGATCGTCGGCGTGATCAACATTCCGATCATCAAATACTCGGTTGAATGGTGGAGCTCTCTGCATCAACCATC
AACTATCAAAATTACCTCTAAATCGACTATGTCGAGCGAAATGTTATACCCACTTTTAATCAATATTTTAGGTTTCGGCC
TTATGATAGGGGCTATCACAATTGTGAGATTTAGAGCAGAAATCTTAGCAAGAAACGGCATGCGCCCTTGGGTGCGTGAA
CTTGCTAAAGCTGAGGAGGTCAAATAA

Upstream 100 bases:

>100_bases
TATGATGGTCAGCTCGCTATAATTGGCGCCATGTTGATCGGTTCGTTAACCTTAGCACCCTTTGCAATTGGTGCATCTCT
GCGAGTGAGTACTAACTAAA

Downstream 100 bases:

>100_bases
TGCAATTCGATTCTATCAGTGATTTTTTCAACATGGGTGGCTATGCCTTTTATGTATGGCTTGCCTATGGCGTGACCTTC
TTCTGTTTATCGACGCTGAT

Product: heme exporter protein CcmC

Products: NA

Alternate protein names: Cytochrome c-type biogenesis protein CcmC [H]

Number of amino acids: Translated: 248; Mature: 248

Protein sequence:

>248_residues
MWKWLHPYADPERAYKLSGTLFPWFATLACLFIAVGTVWGLMFAPTDYQQGDSYRIIFIHVPAASMSMAAYMGMATAAFI
GLVWQIKLADWAAASIAPIGAVITFIALFTGATWGKPMWGTWWVWDARLTSELVLLFLYLGVISLYASFEDKVLAARAAG
ILAIVGVINIPIIKYSVEWWSSLHQPSTIKITSKSTMSSEMLYPLLINILGFGLMIGAITIVRFRAEILARNGMRPWVRE
LAKAEEVK

Sequences:

>Translated_248_residues
MWKWLHPYADPERAYKLSGTLFPWFATLACLFIAVGTVWGLMFAPTDYQQGDSYRIIFIHVPAASMSMAAYMGMATAAFI
GLVWQIKLADWAAASIAPIGAVITFIALFTGATWGKPMWGTWWVWDARLTSELVLLFLYLGVISLYASFEDKVLAARAAG
ILAIVGVINIPIIKYSVEWWSSLHQPSTIKITSKSTMSSEMLYPLLINILGFGLMIGAITIVRFRAEILARNGMRPWVRE
LAKAEEVK
>Mature_248_residues
MWKWLHPYADPERAYKLSGTLFPWFATLACLFIAVGTVWGLMFAPTDYQQGDSYRIIFIHVPAASMSMAAYMGMATAAFI
GLVWQIKLADWAAASIAPIGAVITFIALFTGATWGKPMWGTWWVWDARLTSELVLLFLYLGVISLYASFEDKVLAARAAG
ILAIVGVINIPIIKYSVEWWSSLHQPSTIKITSKSTMSSEMLYPLLINILGFGLMIGAITIVRFRAEILARNGMRPWVRE
LAKAEEVK

Specific function: Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes [H]

COG id: COG0755

COG function: function code O; ABC-type transport system involved in cytochrome c biogenesis, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CcmC/CycZ/HelC family [H]

Homologues:

Organism=Escherichia coli, GI1788527, Length=241, Percent_Identity=58.50622406639, Blast_Score=281, Evalue=3e-77,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002541
- InterPro:   IPR003557 [H]

Pfam domain/function: PF01578 Cytochrom_C_asm [H]

EC number: NA

Molecular weight: Translated: 27663; Mature: 27663

Theoretical pI: Translated: 9.48; Mature: 9.48

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWKWLHPYADPERAYKLSGTLFPWFATLACLFIAVGTVWGLMFAPTDYQQGDSYRIIFIH
CCCCCCCCCCHHHHEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEE
VPAASMSMAAYMGMATAAFIGLVWQIKLADWAAASIAPIGAVITFIALFTGATWGKPMWG
ECCHHHHHHHHHHHHHHHHHHHHHHEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
TWWVWDARLTSELVLLFLYLGVISLYASFEDKVLAARAAGILAIVGVINIPIIKYSVEWW
EEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHH
SSLHQPSTIKITSKSTMSSEMLYPLLINILGFGLMIGAITIVRFRAEILARNGMRPWVRE
HHCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
LAKAEEVK
HHHHHCCC
>Mature Secondary Structure
MWKWLHPYADPERAYKLSGTLFPWFATLACLFIAVGTVWGLMFAPTDYQQGDSYRIIFIH
CCCCCCCCCCHHHHEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEE
VPAASMSMAAYMGMATAAFIGLVWQIKLADWAAASIAPIGAVITFIALFTGATWGKPMWG
ECCHHHHHHHHHHHHHHHHHHHHHHEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
TWWVWDARLTSELVLLFLYLGVISLYASFEDKVLAARAAGILAIVGVINIPIIKYSVEWW
EEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHH
SSLHQPSTIKITSKSTMSSEMLYPLLINILGFGLMIGAITIVRFRAEILARNGMRPWVRE
HHCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
LAKAEEVK
HHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]