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The map label for this gene is chrC [H]

Identifier: 117676301

GI number: 117676301

Start: 252447

End: 253058

Strand: Reverse

Name: chrC [H]

Synonym: Shewana3_4364

Alternate gene names: 117676301

Gene position: 253058-252447 (Counterclockwise)

Preceding gene: 117676302

Following gene: 117676300

Centisome position: 90.72

GC content: 44.77

Gene sequence:

>612_bases
ATGATCACCGAAATAAAACCAAAACCTTTATCCTTCAATGCCGCAAAATTAAAAGGCCTTTCTGCCAATTTGATCGAGTC
GCATTGGACTAACAATTACAGCGGTTCGGTAAAAACATTGAATGCGGTGAATGATCAGTTGAGTCAGGCACTCGCAAACC
CCGACACGCCAGCGTTTCTCTACAATGATCTCAAGCGGGAGCATTTGATTCGCACAGGCTCGGTCATTTTGCACGAATTA
TATTTTGATAACCTGGGCGGTAATGGCAAAGCCGATGGTGAATTACGCTCAGCTTTCGCCAAACAATTTGGTACTTTTGA
TCGCTGGGAAACCGAATTCCGCAAAATCGCTCAAGGCTTGGGCGGTGGTTCCGGGTGGGTTGTTCTGGGGTATAACACGC
ATTTCAATAAGCTGGAAAATTATTGGATGGGTGATCACGCACATTTCCCGGTAGGCACAGTTCCGTTGTTGGTCATGGAT
ATGTATAAACATTCTTATCACATGGACTTTGGCGCGGCTGCCGGTAAATATATTGATGCTTTTTTCAATAATATTAATTG
GGATGAGGTTGCTCATCGGCTCCAAGCCACTCACACGAAGACAACATCCTAA

Upstream 100 bases:

>100_bases
TACCAGTGCGACCGCTGCCGCAGGGTTGCTTATTGCATCGGCATCAAATGTTAGCGCAGCTGAATCGTCGTCTCAGGCAG
CACCTAAAGGAGCAAATTGG

Downstream 100 bases:

>100_bases
AAACGCTATTGGTATGCCTTCTCTTAGGGGGCATACCATTCGCTTCGGCGCAACCAATCAAGGACACGGACGTTATTGAT
CCGGCGCTGAGTGACGTGTG

Product: manganese and iron superoxide dismutase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 203; Mature: 203

Protein sequence:

>203_residues
MITEIKPKPLSFNAAKLKGLSANLIESHWTNNYSGSVKTLNAVNDQLSQALANPDTPAFLYNDLKREHLIRTGSVILHEL
YFDNLGGNGKADGELRSAFAKQFGTFDRWETEFRKIAQGLGGGSGWVVLGYNTHFNKLENYWMGDHAHFPVGTVPLLVMD
MYKHSYHMDFGAAAGKYIDAFFNNINWDEVAHRLQATHTKTTS

Sequences:

>Translated_203_residues
MITEIKPKPLSFNAAKLKGLSANLIESHWTNNYSGSVKTLNAVNDQLSQALANPDTPAFLYNDLKREHLIRTGSVILHEL
YFDNLGGNGKADGELRSAFAKQFGTFDRWETEFRKIAQGLGGGSGWVVLGYNTHFNKLENYWMGDHAHFPVGTVPLLVMD
MYKHSYHMDFGAAAGKYIDAFFNNINWDEVAHRLQATHTKTTS
>Mature_203_residues
MITEIKPKPLSFNAAKLKGLSANLIESHWTNNYSGSVKTLNAVNDQLSQALANPDTPAFLYNDLKREHLIRTGSVILHEL
YFDNLGGNGKADGELRSAFAKQFGTFDRWETEFRKIAQGLGGGSGWVVLGYNTHFNKLENYWMGDHAHFPVGTVPLLVMD
MYKHSYHMDFGAAAGKYIDAFFNNINWDEVAHRLQATHTKTTS

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG0605

COG function: function code P; Superoxide dismutase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron/manganese superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI67782307, Length=182, Percent_Identity=28.5714285714286, Blast_Score=81, Evalue=8e-16,
Organism=Homo sapiens, GI67782305, Length=182, Percent_Identity=28.5714285714286, Blast_Score=81, Evalue=8e-16,
Organism=Escherichia coli, GI1790342, Length=124, Percent_Identity=29.8387096774194, Blast_Score=62, Evalue=4e-11,
Organism=Drosophila melanogaster, GI17136812, Length=200, Percent_Identity=26, Blast_Score=72, Evalue=2e-13,

Paralogues:

None

Copy number: 2980 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001189
- InterPro:   IPR019832
- InterPro:   IPR019831 [H]

Pfam domain/function: PF02777 Sod_Fe_C [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 22768; Mature: 22768

Theoretical pI: Translated: 7.42; Mature: 7.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MITEIKPKPLSFNAAKLKGLSANLIESHWTNNYSGSVKTLNAVNDQLSQALANPDTPAFL
CCCCCCCCCCCCCHHHHCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHH
YNDLKREHLIRTGSVILHELYFDNLGGNGKADGELRSAFAKQFGTFDRWETEFRKIAQGL
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHC
GGGSGWVVLGYNTHFNKLENYWMGDHAHFPVGTVPLLVMDMYKHSYHMDFGAAAGKYIDA
CCCCCEEEECCCCCHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
FFNNINWDEVAHRLQATHTKTTS
HHCCCCHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MITEIKPKPLSFNAAKLKGLSANLIESHWTNNYSGSVKTLNAVNDQLSQALANPDTPAFL
CCCCCCCCCCCCCHHHHCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHH
YNDLKREHLIRTGSVILHELYFDNLGGNGKADGELRSAFAKQFGTFDRWETEFRKIAQGL
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHC
GGGSGWVVLGYNTHFNKLENYWMGDHAHFPVGTVPLLVMDMYKHSYHMDFGAAAGKYIDA
CCCCCEEEECCCCCHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
FFNNINWDEVAHRLQATHTKTTS
HHCCCCHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471500; 2180932 [H]