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The map label for this gene is cph2 [H]

Identifier: 117676267

GI number: 117676267

Start: 220472

End: 221449

Strand: Direct

Name: cph2 [H]

Synonym: Shewana3_4330

Alternate gene names: 117676267

Gene position: 220472-221449 (Clockwise)

Preceding gene: 117676266

Following gene: 117676273

Centisome position: 79.04

GC content: 46.11

Gene sequence:

>978_bases
ATGACCTTTAGTTTAGCTCAAACAGCTAGTGCAGAAACCACACTAAAAGCACCTGCTGAAGCAGATCAGAACCTGCGGGA
TATCACTGAACTGGCGTGTTATATCTGTGATGCACCAGTGGCTATGGTGACGCGAACCGATGACACAAAGCTGAATCTAA
TTGCAAAAGTTGGTATTTCGCGTACCTCTGTATTAATTAAAGAGTCCTTTTGCGTGTATGCAATGGAAACACCTGATGCG
GTAATGGTGGTCCCTGACGCTACTTTAGATCACAGATTCAGTACCAATGCTATGGTGATTTCAGGACCTGGCTACCGATT
TTATGCTGGCTCGCCGCTGATTGATCCCGAAGGTGCAGTGATTGGTACTATTTGTGTCTATGATCATGTTCCTAAGCAGC
TGAACCAGCGGCAGATAAGCTCTTTGCAGGCTCTGTCCAGACAAGTGATCGCCATACTGGAGCTGAAAAAAGTCGGCGAA
CAATTACATAATACCAGCATGACGGATGCGCTGACAGGGGTGAACAACAGAAGAGCTTTTGACCTCAAGTTTGAAGCTGA
ATTTGCTCGCTGGCAAAGAACAGGACAATCTTTTGTACTGGCATTGATTGATATTGATCACTTTAAGAGTTTTAACGACA
GCTATGGTCATGCCGCAGGAGATGAGGCACTGAGTCAAGTCGCGGCTCTGTTTCAGCGCCATAGCAGGAACTATGACTTT
TTCGCCCGTTATGGTGGTGAAGAGTTTGTGCTGATCCTGCCAGGCACAGACACAGCGTCCGCAAATAAAACACTGGAAAA
GTTAAGGCTGGTAGTGGCTAACCATGAGTGGTTATTACGACAATTAACGGTCAGCATAGGTTTGGCCAGCGCTGATTTAT
TTGACGACAAAAAGCAGTTGCTCGAAGTCGCCGATCAGATGTTATACAAAGCTAAAACCCAAGGCCGCAATCAAACCAGT
GTGTTCGCCACACTGTAA

Upstream 100 bases:

>100_bases
ACTTCAAGTCTGACAGATCTATGCTAGAGTTAAATCAACGATTTAATTCATTTTTCTATGCAGGATCTTTGAAAAATGCA
GTAGAAAAACGGAGAAGTAC

Downstream 100 bases:

>100_bases
GAGATCTGTTCATGCTGCGCTGATCTCAAGACCTCATAAAAACTGAGGTCTTGCTTCGGTCGATAAGCTGGTCTGATATT
GGCATTATTTATTCCTTTCA

Product: diguanylate cyclase with GAF sensor

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 325; Mature: 324

Protein sequence:

>325_residues
MTFSLAQTASAETTLKAPAEADQNLRDITELACYICDAPVAMVTRTDDTKLNLIAKVGISRTSVLIKESFCVYAMETPDA
VMVVPDATLDHRFSTNAMVISGPGYRFYAGSPLIDPEGAVIGTICVYDHVPKQLNQRQISSLQALSRQVIAILELKKVGE
QLHNTSMTDALTGVNNRRAFDLKFEAEFARWQRTGQSFVLALIDIDHFKSFNDSYGHAAGDEALSQVAALFQRHSRNYDF
FARYGGEEFVLILPGTDTASANKTLEKLRLVVANHEWLLRQLTVSIGLASADLFDDKKQLLEVADQMLYKAKTQGRNQTS
VFATL

Sequences:

>Translated_325_residues
MTFSLAQTASAETTLKAPAEADQNLRDITELACYICDAPVAMVTRTDDTKLNLIAKVGISRTSVLIKESFCVYAMETPDA
VMVVPDATLDHRFSTNAMVISGPGYRFYAGSPLIDPEGAVIGTICVYDHVPKQLNQRQISSLQALSRQVIAILELKKVGE
QLHNTSMTDALTGVNNRRAFDLKFEAEFARWQRTGQSFVLALIDIDHFKSFNDSYGHAAGDEALSQVAALFQRHSRNYDF
FARYGGEEFVLILPGTDTASANKTLEKLRLVVANHEWLLRQLTVSIGLASADLFDDKKQLLEVADQMLYKAKTQGRNQTS
VFATL
>Mature_324_residues
TFSLAQTASAETTLKAPAEADQNLRDITELACYICDAPVAMVTRTDDTKLNLIAKVGISRTSVLIKESFCVYAMETPDAV
MVVPDATLDHRFSTNAMVISGPGYRFYAGSPLIDPEGAVIGTICVYDHVPKQLNQRQISSLQALSRQVIAILELKKVGEQ
LHNTSMTDALTGVNNRRAFDLKFEAEFARWQRTGQSFVLALIDIDHFKSFNDSYGHAAGDEALSQVAALFQRHSRNYDFF
ARYGGEEFVLILPGTDTASANKTLEKLRLVVANHEWLLRQLTVSIGLASADLFDDKKQLLEVADQMLYKAKTQGRNQTSV
FATL

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG3706

COG function: function code T; Response regulator containing a CheY-like receiver domain and a GGDEF domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI87081881, Length=168, Percent_Identity=39.8809523809524, Blast_Score=108, Evalue=3e-25,
Organism=Escherichia coli, GI145693134, Length=187, Percent_Identity=36.8983957219251, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI1786584, Length=174, Percent_Identity=37.3563218390805, Blast_Score=104, Evalue=9e-24,
Organism=Escherichia coli, GI87082007, Length=163, Percent_Identity=37.4233128834356, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1787262, Length=192, Percent_Identity=31.7708333333333, Blast_Score=92, Evalue=6e-20,
Organism=Escherichia coli, GI1787802, Length=161, Percent_Identity=37.2670807453416, Blast_Score=92, Evalue=6e-20,
Organism=Escherichia coli, GI1788381, Length=228, Percent_Identity=29.8245614035088, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI87081977, Length=221, Percent_Identity=26.6968325791855, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1787816, Length=159, Percent_Identity=32.0754716981132, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI1787056, Length=167, Percent_Identity=31.7365269461078, Blast_Score=72, Evalue=6e-14,
Organism=Escherichia coli, GI1788085, Length=161, Percent_Identity=31.055900621118, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1787541, Length=179, Percent_Identity=31.2849162011173, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI87081974, Length=164, Percent_Identity=26.219512195122, Blast_Score=65, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 35951; Mature: 35820

Theoretical pI: Translated: 5.91; Mature: 5.91

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTFSLAQTASAETTLKAPAEADQNLRDITELACYICDAPVAMVTRTDDTKLNLIAKVGIS
CCCCCCCCCCCCCEECCCCHHCCHHHHHHHHHHHHHCCCEEEEEECCCCEEEEEEECCCC
RTSVLIKESFCVYAMETPDAVMVVPDATLDHRFSTNAMVISGPGYRFYAGSPLIDPEGAV
HHHEEEECCEEEEEECCCCEEEEECCCCCCCCCCCCEEEEECCCEEEECCCCCCCCCCCE
IGTICVYDHVPKQLNQRQISSLQALSRQVIAILELKKVGEQLHNTSMTDALTGVNNRRAF
EEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCEEE
DLKFEAEFARWQRTGQSFVLALIDIDHFKSFNDSYGHAAGDEALSQVAALFQRHSRNYDF
EEEEHHHHHHHHHCCCEEEEEEEEHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCE
FARYGGEEFVLILPGTDTASANKTLEKLRLVVANHEWLLRQLTVSIGLASADLFDDKKQL
EEEECCCEEEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHH
LEVADQMLYKAKTQGRNQTSVFATL
HHHHHHHHHHHHHCCCCCCEEEEEC
>Mature Secondary Structure 
TFSLAQTASAETTLKAPAEADQNLRDITELACYICDAPVAMVTRTDDTKLNLIAKVGIS
CCCCCCCCCCCCEECCCCHHCCHHHHHHHHHHHHHCCCEEEEEECCCCEEEEEEECCCC
RTSVLIKESFCVYAMETPDAVMVVPDATLDHRFSTNAMVISGPGYRFYAGSPLIDPEGAV
HHHEEEECCEEEEEECCCCEEEEECCCCCCCCCCCCEEEEECCCEEEECCCCCCCCCCCE
IGTICVYDHVPKQLNQRQISSLQALSRQVIAILELKKVGEQLHNTSMTDALTGVNNRRAF
EEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCEEE
DLKFEAEFARWQRTGQSFVLALIDIDHFKSFNDSYGHAAGDEALSQVAALFQRHSRNYDF
EEEEHHHHHHHHHCCCEEEEEEEEHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCE
FARYGGEEFVLILPGTDTASANKTLEKLRLVVANHEWLLRQLTVSIGLASADLFDDKKQL
EEEECCCEEEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHH
LEVADQMLYKAKTQGRNQTSVFATL
HHHHHHHHHHHHHCCCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]