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The map label for this gene is ydcM [C]

Identifier: 117676174

GI number: 117676174

Start: 107846

End: 108745

Strand: Reverse

Name: ydcM [C]

Synonym: Shewana3_4234

Alternate gene names: 117676174

Gene position: 108745-107846 (Counterclockwise)

Preceding gene: 117676175

Following gene: 117676167

Centisome position: 38.98

GC content: 44.44

Gene sequence:

>900_bases
GTGATTAATCTTCACCAAGCCTTTGATAACTTCTTTAATCCAAAGTTGAAAGCCAAATATCCACAATTCAAACGCAGACA
TGGAAAACAATCGAGTTACCATTGTGTAGGCGTAAAGGTACTCGATGGCGCAATCAAACTACCGAAAATGAAGCCAGTAG
AGGCGAATATTCACCGTGAGATTGTGGGTACAGTTAAAAGCATCACCGTGAGCATGAGTAAAACAGGTAAGTTCTACGCA
TCAATCCTTGCGGATGATGCTGTGGACGCTCCTAGCCCAATTCATACTGTGAACAAAGTGACAGGTATTGATCTGGGTCT
TTCTCATTTTGCCATTGAGTCAAACGGCAGAAAGACAGCCAACCCAAGATTTGTAAAACGTGCTGAGAAGAATCTCAGAC
GTAAGCAGCGTCAGCTATCCAGAAAAGCAAAAGGCAGTGCCAATCGTGCGAAAGCTCGACTGCGAGTTGCTAAATGCCAT
GAAAAAGTAGCTAATGCTCGTGCCGATTTTCAACACAAACTCTCTCGAACTCTCGTTGACGAAAACCAAGCAGTGATAGT
TGAGACATTGAAATCGGCAAACATGATGAAAAACCGCAAACTGGCGAAACATATAGCGGATGCCTCATGGCATAGCTTTG
TCGTTAAGTTGGAATACAAACTGAAAGAGCAAGGCAAGCATCTAATAAAGCTCGATCAGTGGTACGCCAGCTCTAAGACT
TGCCATTGTTGCGGTCATAAAATGGATGATATGCCCTTATCGGTTCGTCAGTGGAACTGCCCATCTTGCGGCACTACAGA
TATTGATCGCGACTTAAACGCCGCCCTAAATATCCGAGATAAAGGCATTCTGGAATTAAAGGCGGCTGGACGGTCGTCTC
TGCTTATGGAAGCTGCGTAA

Upstream 100 bases:

>100_bases
AGTCCAAAAAAAGGATATAAAGCCACTGCTTTCGGTTGCAAAGAAATCACGAAAATATCATTGGTTGAAGCAATATGATT
CAATTGCTTTGCAGCAATCG

Downstream 100 bases:

>100_bases
GTCTCGATACTATCGAGCAACGGCTAACGAAATAAGAAGCATCGTCCGATAGGGCGGTGAGAAGTCACATCTTCCATTCA
AATTCCTACAAATTTGCACC

Product: IS605 family transposase OrfB

Products: NA

Alternate protein names: ORF401 [H]

Number of amino acids: Translated: 299; Mature: 299

Protein sequence:

>299_residues
MINLHQAFDNFFNPKLKAKYPQFKRRHGKQSSYHCVGVKVLDGAIKLPKMKPVEANIHREIVGTVKSITVSMSKTGKFYA
SILADDAVDAPSPIHTVNKVTGIDLGLSHFAIESNGRKTANPRFVKRAEKNLRRKQRQLSRKAKGSANRAKARLRVAKCH
EKVANARADFQHKLSRTLVDENQAVIVETLKSANMMKNRKLAKHIADASWHSFVVKLEYKLKEQGKHLIKLDQWYASSKT
CHCCGHKMDDMPLSVRQWNCPSCGTTDIDRDLNAALNIRDKGILELKAAGRSSLLMEAA

Sequences:

>Translated_299_residues
MINLHQAFDNFFNPKLKAKYPQFKRRHGKQSSYHCVGVKVLDGAIKLPKMKPVEANIHREIVGTVKSITVSMSKTGKFYA
SILADDAVDAPSPIHTVNKVTGIDLGLSHFAIESNGRKTANPRFVKRAEKNLRRKQRQLSRKAKGSANRAKARLRVAKCH
EKVANARADFQHKLSRTLVDENQAVIVETLKSANMMKNRKLAKHIADASWHSFVVKLEYKLKEQGKHLIKLDQWYASSKT
CHCCGHKMDDMPLSVRQWNCPSCGTTDIDRDLNAALNIRDKGILELKAAGRSSLLMEAA
>Mature_299_residues
MINLHQAFDNFFNPKLKAKYPQFKRRHGKQSSYHCVGVKVLDGAIKLPKMKPVEANIHREIVGTVKSITVSMSKTGKFYA
SILADDAVDAPSPIHTVNKVTGIDLGLSHFAIESNGRKTANPRFVKRAEKNLRRKQRQLSRKAKGSANRAKARLRVAKCH
EKVANARADFQHKLSRTLVDENQAVIVETLKSANMMKNRKLAKHIADASWHSFVVKLEYKLKEQGKHLIKLDQWYASSKT
CHCCGHKMDDMPLSVRQWNCPSCGTTDIDRDLNAALNIRDKGILELKAAGRSSLLMEAA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

Organism=Escherichia coli, GI288549314, Length=298, Percent_Identity=32.8859060402685, Blast_Score=134, Evalue=8e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095
- InterPro:   IPR021027 [H]

Pfam domain/function: PF12323 HTH_14; PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 33605; Mature: 33605

Theoretical pI: Translated: 10.73; Mature: 10.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MINLHQAFDNFFNPKLKAKYPQFKRRHGKQSSYHCVGVKVLDGAIKLPKMKPVEANIHRE
CCCHHHHHHHHCCCCCCCCCCHHHHHCCCCCCEEEEEEEEECCCCCCCCCCCCHHHHHHH
IVGTVKSITVSMSKTGKFYASILADDAVDAPSPIHTVNKVTGIDLGLSHFAIESNGRKTA
HHHHHHHHEEEHHHCCHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCHHHEEEECCCCCCC
NPRFVKRAEKNLRRKQRQLSRKAKGSANRAKARLRVAKCHEKVANARADFQHKLSRTLVD
CHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
ENQAVIVETLKSANMMKNRKLAKHIADASWHSFVVKLEYKLKEQGKHLIKLDQWYASSKT
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHEEEEEEEEHHHHCCCCEEEEHHHHCCCCC
CHCCGHKMDDMPLSVRQWNCPSCGTTDIDRDLNAALNIRDKGILELKAAGRSSLLMEAA
EECCCCCCCCCCCCEECCCCCCCCCCCCCCCCHHEEECCCCCEEEEECCCCCCEEEECC
>Mature Secondary Structure
MINLHQAFDNFFNPKLKAKYPQFKRRHGKQSSYHCVGVKVLDGAIKLPKMKPVEANIHRE
CCCHHHHHHHHCCCCCCCCCCHHHHHCCCCCCEEEEEEEEECCCCCCCCCCCCHHHHHHH
IVGTVKSITVSMSKTGKFYASILADDAVDAPSPIHTVNKVTGIDLGLSHFAIESNGRKTA
HHHHHHHHEEEHHHCCHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCHHHEEEECCCCCCC
NPRFVKRAEKNLRRKQRQLSRKAKGSANRAKARLRVAKCHEKVANARADFQHKLSRTLVD
CHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
ENQAVIVETLKSANMMKNRKLAKHIADASWHSFVVKLEYKLKEQGKHLIKLDQWYASSKT
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHEEEEEEEEHHHHCCCCEEEEHHHHCCCCC
CHCCGHKMDDMPLSVRQWNCPSCGTTDIDRDLNAALNIRDKGILELKAAGRSSLLMEAA
EECCCCCCCCCCCCEECCCCCCCCCCCCCCCCHHEEECCCCCEEEEECCCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7665509 [H]