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The map label for this gene is ssb [H]

Identifier: 117676169

GI number: 117676169

Start: 103338

End: 103865

Strand: Direct

Name: ssb [H]

Synonym: Shewana3_4229

Alternate gene names: 117676169

Gene position: 103338-103865 (Clockwise)

Preceding gene: 117676168

Following gene: 117676170

Centisome position: 37.05

GC content: 46.78

Gene sequence:

>528_bases
ATGGGTTCAGTTAATAAAGTTATCATTGTTGGCAATATCGGTCAGGAAATTGATTTTAAGACACTTCCTAGCGGTACAAG
CGTAGCAAATTTCAGTGTGGCCACGAGTGACACTTGGAAAGACCAACAGGGTGTTCAGCAAGAGGTGACCGATTGGCACA
AGATTGTTGTTTGGGGCAAGCTGGCTGAGATTATCAATCAATACGGTGGAAAAGGCCGTCAGGTCTACATCGAAGGCAAG
CAAAAGACTCGCAAATATAAAGATGCCAATGGCCAAGAACGCTACACAACAGAAGTTGTCGTGGACTTTGATGGTCAAGT
ACAGCTTTTAGGTGGTTCACCAAAGGATAATGCAGGCCAAAGCTCTGGTTATCAGCAAAACGCACCACAGCAGCAAGGTT
ACCAGCAAAACGCACCGCTGCTGCATGGATACCAGCAAAATGCACCGCAGCAAGGCGGTTATCAGGCGCAACCACAGGGC
GGTCACCAACAAAATACTCAGCAACAGGCTTATAACTACCACCGTTAA

Upstream 100 bases:

>100_bases
TGTGGAACTGGTGGCAATAAATATTTAAATATACAAAATTTGTGTGATTATGAGTTTGTGTTTTAATGTGCTCGTTAATT
ACTTCTTTGGAGAGAGCAAA

Downstream 100 bases:

>100_bases
CCTTTAGGGTTTGTTGAACTAGCCGCCTTCGGGCGGCTTTTGTTCTGTCCACAGGGGCTCATAAAGCCTGCGGCGCCGTG
CCTTTAACTGGCCGATCCCA

Product: single-strand binding protein

Products: NA

Alternate protein names: SSB; Helix-destabilizing protein [H]

Number of amino acids: Translated: 175; Mature: 174

Protein sequence:

>175_residues
MGSVNKVIIVGNIGQEIDFKTLPSGTSVANFSVATSDTWKDQQGVQQEVTDWHKIVVWGKLAEIINQYGGKGRQVYIEGK
QKTRKYKDANGQERYTTEVVVDFDGQVQLLGGSPKDNAGQSSGYQQNAPQQQGYQQNAPLLHGYQQNAPQQGGYQAQPQG
GHQQNTQQQAYNYHR

Sequences:

>Translated_175_residues
MGSVNKVIIVGNIGQEIDFKTLPSGTSVANFSVATSDTWKDQQGVQQEVTDWHKIVVWGKLAEIINQYGGKGRQVYIEGK
QKTRKYKDANGQERYTTEVVVDFDGQVQLLGGSPKDNAGQSSGYQQNAPQQQGYQQNAPLLHGYQQNAPQQGGYQAQPQG
GHQQNTQQQAYNYHR
>Mature_174_residues
GSVNKVIIVGNIGQEIDFKTLPSGTSVANFSVATSDTWKDQQGVQQEVTDWHKIVVWGKLAEIINQYGGKGRQVYIEGKQ
KTRKYKDANGQERYTTEVVVDFDGQVQLLGGSPKDNAGQSSGYQQNAPQQQGYQQNAPLLHGYQQNAPQQGGYQAQPQGG
HQQNTQQQAYNYHR

Specific function: This protein is essential for replication of the chromosome. It is also involved in DNA recombination and repair [H]

COG id: COG0629

COG function: function code L; Single-stranded DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SSB domain [H]

Homologues:

Organism=Escherichia coli, GI1790494, Length=110, Percent_Identity=53.6363636363636, Blast_Score=129, Evalue=9e-32,

Paralogues:

None

Copy number: 1622 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 2,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR000424
- InterPro:   IPR011344 [H]

Pfam domain/function: PF00436 SSB [H]

EC number: NA

Molecular weight: Translated: 19414; Mature: 19283

Theoretical pI: Translated: 8.70; Mature: 8.70

Prosite motif: PS50935 SSB

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
0.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGSVNKVIIVGNIGQEIDFKTLPSGTSVANFSVATSDTWKDQQGVQQEVTDWHKIVVWGK
CCCCCEEEEECCCCCCCCCEECCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHEEHHHH
LAEIINQYGGKGRQVYIEGKQKTRKYKDANGQERYTTEVVVDFDGQVQLLGGSPKDNAGQ
HHHHHHHHCCCCCEEEEECCHHHHHHCCCCCCCEEEEEEEEECCCEEEEECCCCCCCCCC
SSGYQQNAPQQQGYQQNAPLLHGYQQNAPQQGGYQAQPQGGHQQNTQQQAYNYHR
CCCCCCCCCHHCCCCCCCCEEECHHHCCCCCCCEECCCCCCCCCCHHHHHHCCCC
>Mature Secondary Structure 
GSVNKVIIVGNIGQEIDFKTLPSGTSVANFSVATSDTWKDQQGVQQEVTDWHKIVVWGK
CCCCEEEEECCCCCCCCCEECCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHEEHHHH
LAEIINQYGGKGRQVYIEGKQKTRKYKDANGQERYTTEVVVDFDGQVQLLGGSPKDNAGQ
HHHHHHHHCCCCCEEEEECCHHHHHHCCCCCCCEEEEEEEEECCCEEEEECCCCCCCCCC
SSGYQQNAPQQQGYQQNAPLLHGYQQNAPQQGGYQAQPQGGHQQNTQQQAYNYHR
CCCCCCCCCHHCCCCCCCCEEECHHHCCCCCCCEECCCCCCCCCCHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12368813 [H]