Click here to switch to the map view.

The map label for this gene is 117676149

Identifier: 117676149

GI number: 117676149

Start: 78004

End: 78510

Strand: Reverse

Name: 117676149

Synonym: Shewana3_4209

Alternate gene names: NA

Gene position: 78510-78004 (Counterclockwise)

Preceding gene: 117676151

Following gene: 117676148

Centisome position: 28.15

GC content: 44.38

Gene sequence:

>507_bases
ATGATCAAATTCGACAAGGCTCACTGGCGTCACACGTATTTACTTCCATTTTGCATTGCTGCCGTCATTACAGCTGCTAC
TACGTGGTTTAGTCATAGCTATAAACTGATATTGGTACTCAACAGCGATAAATGCATTCCTGGTTCTGTATTCGTGGTAG
ACACACGACAAAAAACCGTTAATAGCGGCGAGCTGGTGATGTTCATGTCTCCTCAAACCGACATTCTTCCGTCAGGGATC
AACATCATAAAGTTAGTGGCAGGTGTCGAAGGAGACCTCGTAGAAATAGGGAGGTTTAGTGTGACCAACAAAAAACACAG
GTTCCCAGCACCTATCGACAATGCTGCGAATGCGCTGAATATCGATGTGCAAAAGCTCATTGGTACTAGGACTGTAGAGA
ATGGCGGGATCTTTGTGTTAGGCACAGAACCTGGCAGTTATGACAGTCGTTTCTTTGGTTCAATCAAAACTCAGCAGGTG
ATTGGTCGTGCTTACCTCATTATCTAA

Upstream 100 bases:

>100_bases
TCTAAGTCATTCACAGTAGATTTCATCGCCGATCTCGTTGTTGCTGAACTGCATTCCGTCTAGTAATATTCATGAACTGT
GTGTTAATAGAAATGTGTAG

Downstream 100 bases:

>100_bases
TAGACAGTTTCTTGTTAGCTTGTTTGTGGCGGTATCGATGTCTGCCATTTATTTCGATGCAATGGCTACAGACGATAATC
AGCAGTTTATTCTGGATGCA

Product: Type IV secretory pathway protease TraF-like protein

Products: NA

Alternate protein names: Type IV Secretory Pathway Protease TraF-Like Protein

Number of amino acids: Translated: 168; Mature: 168

Protein sequence:

>168_residues
MIKFDKAHWRHTYLLPFCIAAVITAATTWFSHSYKLILVLNSDKCIPGSVFVVDTRQKTVNSGELVMFMSPQTDILPSGI
NIIKLVAGVEGDLVEIGRFSVTNKKHRFPAPIDNAANALNIDVQKLIGTRTVENGGIFVLGTEPGSYDSRFFGSIKTQQV
IGRAYLII

Sequences:

>Translated_168_residues
MIKFDKAHWRHTYLLPFCIAAVITAATTWFSHSYKLILVLNSDKCIPGSVFVVDTRQKTVNSGELVMFMSPQTDILPSGI
NIIKLVAGVEGDLVEIGRFSVTNKKHRFPAPIDNAANALNIDVQKLIGTRTVENGGIFVLGTEPGSYDSRFFGSIKTQQV
IGRAYLII
>Mature_168_residues
MIKFDKAHWRHTYLLPFCIAAVITAATTWFSHSYKLILVLNSDKCIPGSVFVVDTRQKTVNSGELVMFMSPQTDILPSGI
NIIKLVAGVEGDLVEIGRFSVTNKKHRFPAPIDNAANALNIDVQKLIGTRTVENGGIFVLGTEPGSYDSRFFGSIKTQQV
IGRAYLII

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 18528; Mature: 18528

Theoretical pI: Translated: 9.50; Mature: 9.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKFDKAHWRHTYLLPFCIAAVITAATTWFSHSYKLILVLNSDKCIPGSVFVVDTRQKTV
CCCCCCCCCCEEEHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCEEEEEECCCCCC
NSGELVMFMSPQTDILPSGINIIKLVAGVEGDLVEIGRFSVTNKKHRFPAPIDNAANALN
CCCCEEEEECCCCCCCCCCCCEEEEEECCCCCEEEECEEEECCCCCCCCCCCCCCCCEEE
IDVQKLIGTRTVENGGIFVLGTEPGSYDSRFFGSIKTQQVIGRAYLII
EEHHHHHCCEEECCCCEEEEECCCCCCCCCEECCCCHHHHHCEEEEEC
>Mature Secondary Structure
MIKFDKAHWRHTYLLPFCIAAVITAATTWFSHSYKLILVLNSDKCIPGSVFVVDTRQKTV
CCCCCCCCCCEEEHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCEEEEEECCCCCC
NSGELVMFMSPQTDILPSGINIIKLVAGVEGDLVEIGRFSVTNKKHRFPAPIDNAANALN
CCCCEEEEECCCCCCCCCCCCEEEEEECCCCCEEEECEEEECCCCCCCCCCCCCCCCEEE
IDVQKLIGTRTVENGGIFVLGTEPGSYDSRFFGSIKTQQVIGRAYLII
EEHHHHHCCEEECCCCEEEEECCCCCCCCCEECCCCHHHHHCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA