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The map label for this gene is traU [H]

Identifier: 117676147

GI number: 117676147

Start: 75580

End: 76659

Strand: Reverse

Name: traU [H]

Synonym: Shewana3_4207

Alternate gene names: 117676147

Gene position: 76659-75580 (Counterclockwise)

Preceding gene: 117676148

Following gene: 117676146

Centisome position: 27.48

GC content: 47.96

Gene sequence:

>1080_bases
ATGCCGGACTCGGTTTGCCCCGATGCTGGCTATTTCTCAAACCTGATTAACTCTTTTTGCTGGTCATGTACGCTACCTTT
TAACCTCGCCGGATTCTCGGACAATGTGCCTAAAGGGGCTAATTCGAGTCGTTTATGCTCATGCTCGGATGCTCTGGGTG
TGCCGGAGCTTGGGGTATCTCTGGGTTACTGGTCACCTGATCATTTAGTAGAAGTCTCTGCAACGCCATGGTGCAGTCCA
ACGCTGGGTGGAACCTTGCTACAAAATGACATGACGATGCGGGGGAGGGCATCCAACCCAGATACTCAATCTGCCGAAAC
GGTATCGTTCTTACATTACAACTACATCATCAATCCGGTTTTCAAGATGTTAGGTCTTTTCTTGTTGCCTGAGTGCGACA
CATCCCCTGGTTACTTTGACCTCGATATTGCGTACATGTCAATTCTCGATGTCACCTACGAAAACTCGGCGCTATCATTT
CTGTTCACTCCTGACGCAATTCCGATTGCGAATCCTGTTGGCCGCGCCATTTGTGTTGCCGATGGGATGATCACTGCTAG
TAGCGGCAGTGCTAACGAGGCACTGTGGTTCTGCGCTGGCTTAGATGGTCCCTTGTATCCATTAACCGGCTTTATTGGGG
CCGACAATGATTTTATCCGCAATACCCAGTTAATCACGACTCGTTCACTTGCTGCGCTACATCGCAGGGGGTTAGCACGA
AAAACTTACGGTAAAGAGGCGATGTGTAACGCCGAGTACAGTCCAATGATCCCTAAGGCGCAGTACAAAATTTCTATGAT
GTATCCGTCTCCTGAAGCGAATCCTGCAGCAGCATCAGCCGTGAAACCCACGAAGGCTTTTAATATTGAGGATCTACAAA
ATCCTGAAACTGGCGATTACGACAACAGCGAAGATAAAAATAAATCAACCCTAGATGGTTCATGGGATGAATGTTGTCAC
CCTCTCGGTTGGCCTACGATTTGGTGGGGTTCAGGTAGAAAGTCTCCTGGTAATGGAAAAGACCAACACGCGGTTTATTC
AATTTTCAGATACACCGATTGCTGTGTGAGGGTTCAATAA

Upstream 100 bases:

>100_bases
TATTAGTAGCTCCAAATGGCGGTGCCAAATGATGAAGAAGTTCGCAAAAGTAGCTGTTTTTCTGGCTTCCATGATGTCCG
TAAATGTGAGTGCGAACAGT

Downstream 100 bases:

>100_bases
CAATGGAAGATAAACTGGTTACGTGGTGGGAAAAGGTAATCTCTTACGGAATAGGAAGCATTTACTTATTCAATATTTTA
ACTATGAGTTTTCTGGCGCT

Product: TraU family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 359; Mature: 358

Protein sequence:

>359_residues
MPDSVCPDAGYFSNLINSFCWSCTLPFNLAGFSDNVPKGANSSRLCSCSDALGVPELGVSLGYWSPDHLVEVSATPWCSP
TLGGTLLQNDMTMRGRASNPDTQSAETVSFLHYNYIINPVFKMLGLFLLPECDTSPGYFDLDIAYMSILDVTYENSALSF
LFTPDAIPIANPVGRAICVADGMITASSGSANEALWFCAGLDGPLYPLTGFIGADNDFIRNTQLITTRSLAALHRRGLAR
KTYGKEAMCNAEYSPMIPKAQYKISMMYPSPEANPAAASAVKPTKAFNIEDLQNPETGDYDNSEDKNKSTLDGSWDECCH
PLGWPTIWWGSGRKSPGNGKDQHAVYSIFRYTDCCVRVQ

Sequences:

>Translated_359_residues
MPDSVCPDAGYFSNLINSFCWSCTLPFNLAGFSDNVPKGANSSRLCSCSDALGVPELGVSLGYWSPDHLVEVSATPWCSP
TLGGTLLQNDMTMRGRASNPDTQSAETVSFLHYNYIINPVFKMLGLFLLPECDTSPGYFDLDIAYMSILDVTYENSALSF
LFTPDAIPIANPVGRAICVADGMITASSGSANEALWFCAGLDGPLYPLTGFIGADNDFIRNTQLITTRSLAALHRRGLAR
KTYGKEAMCNAEYSPMIPKAQYKISMMYPSPEANPAAASAVKPTKAFNIEDLQNPETGDYDNSEDKNKSTLDGSWDECCH
PLGWPTIWWGSGRKSPGNGKDQHAVYSIFRYTDCCVRVQ
>Mature_358_residues
PDSVCPDAGYFSNLINSFCWSCTLPFNLAGFSDNVPKGANSSRLCSCSDALGVPELGVSLGYWSPDHLVEVSATPWCSPT
LGGTLLQNDMTMRGRASNPDTQSAETVSFLHYNYIINPVFKMLGLFLLPECDTSPGYFDLDIAYMSILDVTYENSALSFL
FTPDAIPIANPVGRAICVADGMITASSGSANEALWFCAGLDGPLYPLTGFIGADNDFIRNTQLITTRSLAALHRRGLARK
TYGKEAMCNAEYSPMIPKAQYKISMMYPSPEANPAAASAVKPTKAFNIEDLQNPETGDYDNSEDKNKSTLDGSWDECCHP
LGWPTIWWGSGRKSPGNGKDQHAVYSIFRYTDCCVRVQ

Specific function: Appears to be more essential to conjugal DNA transfer than to assembly of pilus filaments. Required for F plasmid conjugative transfer [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009649 [H]

Pfam domain/function: PF06834 TraU [H]

EC number: NA

Molecular weight: Translated: 39119; Mature: 38988

Theoretical pI: Translated: 4.54; Mature: 4.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.9 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
6.7 %Cys+Met (Translated Protein)
3.9 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
6.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPDSVCPDAGYFSNLINSFCWSCTLPFNLAGFSDNVPKGANSSRLCSCSDALGVPELGVS
CCCCCCCCCHHHHHHHHHHHHEECCCEEECCCCCCCCCCCCCCCEEECHHCCCCCHHCCE
LGYWSPDHLVEVSATPWCSPTLGGTLLQNDMTMRGRASNPDTQSAETVSFLHYNYIINPV
ECCCCCCCEEEECCCCCCCCCCCCEEECCCCEECCCCCCCCCCCCCEEEEEHHHHHHHHH
FKMLGLFLLPECDTSPGYFDLDIAYMSILDVTYENSALSFLFTPDAIPIANPVGRAICVA
HHHHHHHCCCCCCCCCCEEEEHHHHHHHHHEEECCCEEEEEECCCCCCCCCCCCCEEEEE
DGMITASSGSANEALWFCAGLDGPLYPLTGFIGADNDFIRNTQLITTRSLAALHRRGLAR
CCEEEECCCCCCCEEEEEECCCCCCCHHEEEECCCCCHHCCCEEEHHHHHHHHHHCCCHH
KTYGKEAMCNAEYSPMIPKAQYKISMMYPSPEANPAAASAVKPTKAFNIEDLQNPETGDY
HHCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCHHHCCCCCCCCCHHHCCCCCCCCC
DNSEDKNKSTLDGSWDECCHPLGWPTIWWGSGRKSPGNGKDQHAVYSIFRYTDCCVRVQ
CCCCCCCCCCCCCCHHHHCCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHCEEEECC
>Mature Secondary Structure 
PDSVCPDAGYFSNLINSFCWSCTLPFNLAGFSDNVPKGANSSRLCSCSDALGVPELGVS
CCCCCCCCHHHHHHHHHHHHEECCCEEECCCCCCCCCCCCCCCEEECHHCCCCCHHCCE
LGYWSPDHLVEVSATPWCSPTLGGTLLQNDMTMRGRASNPDTQSAETVSFLHYNYIINPV
ECCCCCCCEEEECCCCCCCCCCCCEEECCCCEECCCCCCCCCCCCCEEEEEHHHHHHHHH
FKMLGLFLLPECDTSPGYFDLDIAYMSILDVTYENSALSFLFTPDAIPIANPVGRAICVA
HHHHHHHCCCCCCCCCCEEEEHHHHHHHHHEEECCCEEEEEECCCCCCCCCCCCCEEEEE
DGMITASSGSANEALWFCAGLDGPLYPLTGFIGADNDFIRNTQLITTRSLAALHRRGLAR
CCEEEECCCCCCCEEEEEECCCCCCCHHEEEECCCCCHHCCCEEEHHHHHHHHHHCCCHH
KTYGKEAMCNAEYSPMIPKAQYKISMMYPSPEANPAAASAVKPTKAFNIEDLQNPETGDY
HHCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCHHHCCCCCCCCCHHHCCCCCCCCC
DNSEDKNKSTLDGSWDECCHPLGWPTIWWGSGRKSPGNGKDQHAVYSIFRYTDCCVRVQ
CCCCCCCCCCCCCCHHHHCCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2198250; 7915817; 2050638; 1355084 [H]