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The map label for this gene is umuD [H]

Identifier: 117676113

GI number: 117676113

Start: 39612

End: 40346

Strand: Reverse

Name: umuD [H]

Synonym: Shewana3_4173

Alternate gene names: 117676113

Gene position: 40346-39612 (Counterclockwise)

Preceding gene: 117676114

Following gene: 117676112

Centisome position: 14.46

GC content: 48.71

Gene sequence:

>735_bases
GTGATTTGTCCTATGAACGTCATCATTAGTTTGGCATCGGCAGGCATACACGGCTTTGAGAGTCCAGCCGCTGGATACCA
AGAGAAGGCGCTAAGCCTCAATAATCTTATTGTCTCACACCCATCAGCAACGGTATTTGCAGAGGTTACCGACGACGCTA
TGACGGGTCTTGGGCTATTTACCGGAGATCTACTTGTCGTTGATAAGTCATTGACTGCGACGCGGGGAGATGTCGTTTTG
GCGCTGGTGCACGGCGAAACCGTTTGTCGGCAGCTAGACGATGACCATGACCATCATCAACTTCATGCCAATACCAATGC
TCATTATTCCGAAATATCAGTCACAGACGGGATAGAGATTCAGGGCGTGGCCATTTGTGCAGTGCGCTTTCATCGACGCA
AGCGCGATCCTCTAGTGTTGAAAAGCCTCGATGACCTTCTGGTTGAATCGACGTTTGTGGGTCGTGCAAGAGGGGAGTCT
ATGACGGGGGTGGGCATCCACTCCGGTGACATCCTGATAGTGTCACGTCAACTAACTCCAAGTTCCGGCGATGTCATCAT
AGCCATGTATAACGAGGAATTTGTTTGTAAAGTCTTAGATCTATCCAATAGCAGGTTGTTATCGGCTAATGACGATTTTG
AGCCGGTATCAATTAGGCTTGATGACCGCTTCTGGTGCGAAGGGGTCGTGCCAGCATCCATTAGATTATTGAAACAACCG
AGTTTATTGGTATGA

Upstream 100 bases:

>100_bases
TTTAATATTTGTTCCCTCCATGTATTCTTTACGCAAAAAATCATCTTCGGGATTTTCGATGTTTCAATAATTAGCTATAC
TGTATTAATGTACAGTATTT

Downstream 100 bases:

>100_bases
GCAGCATAATAGCGTTATGCGATGGGAATAAGTTTTACAGCTCATGCGAACAGATTTTTAACCCGCAGTATCGTGGTAAG
CCTCTAATTGTGGTCTCGAA

Product: putative prophage repressor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 244; Mature: 244

Protein sequence:

>244_residues
MICPMNVIISLASAGIHGFESPAAGYQEKALSLNNLIVSHPSATVFAEVTDDAMTGLGLFTGDLLVVDKSLTATRGDVVL
ALVHGETVCRQLDDDHDHHQLHANTNAHYSEISVTDGIEIQGVAICAVRFHRRKRDPLVLKSLDDLLVESTFVGRARGES
MTGVGIHSGDILIVSRQLTPSSGDVIIAMYNEEFVCKVLDLSNSRLLSANDDFEPVSIRLDDRFWCEGVVPASIRLLKQP
SLLV

Sequences:

>Translated_244_residues
MICPMNVIISLASAGIHGFESPAAGYQEKALSLNNLIVSHPSATVFAEVTDDAMTGLGLFTGDLLVVDKSLTATRGDVVL
ALVHGETVCRQLDDDHDHHQLHANTNAHYSEISVTDGIEIQGVAICAVRFHRRKRDPLVLKSLDDLLVESTFVGRARGES
MTGVGIHSGDILIVSRQLTPSSGDVIIAMYNEEFVCKVLDLSNSRLLSANDDFEPVSIRLDDRFWCEGVVPASIRLLKQP
SLLV
>Mature_244_residues
MICPMNVIISLASAGIHGFESPAAGYQEKALSLNNLIVSHPSATVFAEVTDDAMTGLGLFTGDLLVVDKSLTATRGDVVL
ALVHGETVCRQLDDDHDHHQLHANTNAHYSEISVTDGIEIQGVAICAVRFHRRKRDPLVLKSLDDLLVESTFVGRARGES
MTGVGIHSGDILIVSRQLTPSSGDVIIAMYNEEFVCKVLDLSNSRLLSANDDFEPVSIRLDDRFWCEGVVPASIRLLKQP
SLLV

Specific function: Involved in UV protection and mutation. Essential for induced (or SOS) mutagenesis. May modify the DNA replication machinery to allow bypass synthesis across a damaged template [H]

COG id: COG1974

COG function: function code KT; SOS-response transcriptional repressors (RecA-mediated autopeptidases)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase S24 family [H]

Homologues:

Organism=Escherichia coli, GI1787431, Length=122, Percent_Identity=39.344262295082, Blast_Score=85, Evalue=5e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006197
- InterPro:   IPR019759
- InterPro:   IPR015927
- InterPro:   IPR011056 [H]

Pfam domain/function: PF00717 Peptidase_S24 [H]

EC number: 3.4.21.- [C]

Molecular weight: Translated: 26473; Mature: 26473

Theoretical pI: Translated: 4.93; Mature: 4.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MICPMNVIISLASAGIHGFESPAAGYQEKALSLNNLIVSHPSATVFAEVTDDAMTGLGLF
CCCHHHHHHHHHHCCCCCCCCCCCCHHHHHEECCCEEEECCCCEEEEEECCCHHHCCCEE
TGDLLVVDKSLTATRGDVVLALVHGETVCRQLDDDHDHHQLHANTNAHYSEISVTDGIEI
ECCEEEEECCCCCCCCCEEEEEECCHHHHHHCCCCCCCEEEECCCCCEEEEEEECCCCEE
QGVAICAVRFHRRKRDPLVLKSLDDLLVESTFVGRARGESMTGVGIHSGDILIVSRQLTP
CEEEEEEEEHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCEEEEEEECCC
SSGDVIIAMYNEEFVCKVLDLSNSRLLSANDDFEPVSIRLDDRFWCEGVVPASIRLLKQP
CCCCEEEEEECCCEEEEEEECCCCEEEECCCCCCEEEEEECCCEEECCCCCHHHEEECCC
SLLV
CCCC
>Mature Secondary Structure
MICPMNVIISLASAGIHGFESPAAGYQEKALSLNNLIVSHPSATVFAEVTDDAMTGLGLF
CCCHHHHHHHHHHCCCCCCCCCCCCHHHHHEECCCEEEECCCCEEEEEECCCHHHCCCEE
TGDLLVVDKSLTATRGDVVLALVHGETVCRQLDDDHDHHQLHANTNAHYSEISVTDGIEI
ECCEEEEECCCCCCCCCEEEEEECCHHHHHHCCCCCCCEEEECCCCCEEEEEEECCCCEE
QGVAICAVRFHRRKRDPLVLKSLDDLLVESTFVGRARGESMTGVGIHSGDILIVSRQLTP
CEEEEEEEEHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCEEEEEEECCC
SSGDVIIAMYNEEFVCKVLDLSNSRLLSANDDFEPVSIRLDDRFWCEGVVPASIRLLKQP
CCCCEEEEEECCCEEEEEEECCCCEEEECCCCCCEEEEEECCCEEECCCCCHHHEEECCC
SLLV
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]