Click here to switch to the map view.

The map label for this gene is zntR [H]

Identifier: 117676098

GI number: 117676098

Start: 20393

End: 20800

Strand: Direct

Name: zntR [H]

Synonym: Shewana3_4158

Alternate gene names: 117676098

Gene position: 20393-20800 (Clockwise)

Preceding gene: 117676089

Following gene: 117676099

Centisome position: 7.31

GC content: 48.53

Gene sequence:

>408_bases
ATGAAGATTGGCGAGCTGGCAAAAAAGACGGATTGCTCGGTGCAAACTATCCGTTACTATGAAAAAGAACAGTTGCTGTG
CACGACACAGCGTAGTGACGGCAATTTTCGACTTTACGATGAAGCTGCTGTCGAACAGCTGCTATTTATCAAGCTCTGCC
GTAACCTGGATCTCAGTTTGTCCGAGATCCGCCAGCTACTCACATTAAAACGCTCACCGGGTGCGCAATGTGATCAAGTC
AATCGCATGATGGATACGCACATTCAACAAGTGGAAACGCGCATTCAGAAGCTGGTTCAGCTGCGCGAGCATTTGAAAGT
ACTTCGCCGCAGCTGCTCCAGTGAAAGGACGATCGAACAGTGCGGCATCTTGCAAACGTTAACCACTAATCAGCATCAGA
AGCGGTAA

Upstream 100 bases:

>100_bases
TTGCCACCGCATGTGGTCGTCATAAAAAACCCTTGTTCTATCCAAGGTGGGCAGTTTAAACTCTATAGTTACTATAGAGT
CAAGCACAGAGATTGAATAA

Downstream 100 bases:

>100_bases
CACTTACGCGCTTGAAATCGGACGCCTGTGTTATCGGCGGTGATGTTGCGCGTTTTGATTTGGATAGTATTAAAAATACC
AGGTAAACCAGAAGTACCGA

Product: MerR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 135; Mature: 135

Protein sequence:

>135_residues
MKIGELAKKTDCSVQTIRYYEKEQLLCTTQRSDGNFRLYDEAAVEQLLFIKLCRNLDLSLSEIRQLLTLKRSPGAQCDQV
NRMMDTHIQQVETRIQKLVQLREHLKVLRRSCSSERTIEQCGILQTLTTNQHQKR

Sequences:

>Translated_135_residues
MKIGELAKKTDCSVQTIRYYEKEQLLCTTQRSDGNFRLYDEAAVEQLLFIKLCRNLDLSLSEIRQLLTLKRSPGAQCDQV
NRMMDTHIQQVETRIQKLVQLREHLKVLRRSCSSERTIEQCGILQTLTTNQHQKR
>Mature_135_residues
MKIGELAKKTDCSVQTIRYYEKEQLLCTTQRSDGNFRLYDEAAVEQLLFIKLCRNLDLSLSEIRQLLTLKRSPGAQCDQV
NRMMDTHIQQVETRIQKLVQLREHLKVLRRSCSSERTIEQCGILQTLTTNQHQKR

Specific function: Transcriptional regulator [H]

COG id: COG0789

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH merR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789687, Length=128, Percent_Identity=36.71875, Blast_Score=83, Evalue=6e-18,
Organism=Escherichia coli, GI1786695, Length=134, Percent_Identity=25.3731343283582, Blast_Score=61, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009061
- InterPro:   IPR000551
- InterPro:   IPR015358 [H]

Pfam domain/function: PF00376 MerR; PF09278 MerR-DNA-bind [H]

EC number: NA

Molecular weight: Translated: 15839; Mature: 15839

Theoretical pI: Translated: 9.10; Mature: 9.10

Prosite motif: PS00552 HTH_MERR_1 ; PS50937 HTH_MERR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
6.7 %Cys+Met (Translated Protein)
4.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
6.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIGELAKKTDCSVQTIRYYEKEQLLCTTQRSDGNFRLYDEAAVEQLLFIKLCRNLDLSL
CCCHHHHHHCCCCHHHHHHHHHHHHHHEECCCCCCEEEHHHHHHHHHHHHHHHHCCCCCH
SEIRQLLTLKRSPGAQCDQVNRMMDTHIQQVETRIQKLVQLREHLKVLRRSCSSERTIEQ
HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
CGILQTLTTNQHQKR
HHHHHHHHCCCCCCC
>Mature Secondary Structure
MKIGELAKKTDCSVQTIRYYEKEQLLCTTQRSDGNFRLYDEAAVEQLLFIKLCRNLDLSL
CCCHHHHHHCCCCHHHHHHHHHHHHHHEECCCCCCEEEHHHHHHHHHHHHHHHHCCCCCH
SEIRQLLTLKRSPGAQCDQVNRMMDTHIQQVETRIQKLVQLREHLKVLRRSCSSERTIEQ
HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
CGILQTLTTNQHQKR
HHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]