| Definition | Borrelia afzelii PKo plasmid lp60, complete sequence. |
|---|---|
| Accession | NC_008564 |
| Length | 59,958 |
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The map label for this gene is 117621640
Identifier: 117621640
GI number: 117621640
Start: 54670
End: 55425
Strand: Reverse
Name: 117621640
Synonym: BAPKO_2069
Alternate gene names: NA
Gene position: 55425-54670 (Counterclockwise)
Preceding gene: 117621641
Following gene: 117621639
Centisome position: 92.44
GC content: 26.19
Gene sequence:
>756_bases TTGACAAAAACTAAACTAAATATAATTAAAGTTAACATTGTTGTAATAATATTAACTTTAATTTGCATCTCATGTGCTGT TGATAAAATAGACCTGGAACAAAAAAACCAAAATTTTGAAAATGCTGATCCTCTAAATAAAAAAAATCAAAATTTTGAAA ATGCTGATCCTCTAAATAAAAAAAATCAAAAAACTAAAGCCTCAAAATTAGAAACAGCTGCTAAGAACCTGGAAAATCAA AACAAACAAGAATATATAAAAATAAATGAAATTGATGCTCAAGGAATTAATTTCCTAGCTACTTTTAAAGCTGATGAGAA GGATAATCTTTCTCAATATGAAGAAATGCAAATCAAAAGAACAATTTATTCATCTTTAAATTACGAAAAACAAAAAATAA ATACATTAAAAGAAATTCTTGAAACACTTTACAACAAGCTTCAGCACAGGTATACATCTAAAGAATTCATTTATCAAATA GTAGCAAGTATTCAATACGACATAGATAGGGTTTTATGCTTAATAAAAGAAGCAATAATAAAAGATAACTTGCACACTCA AAACCAAAAAGAATCCGAATTACTAATGAACCTGGATTCTAGCTTAAAGACAAGACAAAACTTTGCAAAAAAATTAAACG AAACTATTGACGATTACAATAAAGATTCAAAAAACATTCAAACCAATGTGGACGCATTAGCAACCTATATGAAGGAAAAT TACAAAACTCTTGATTCTTTTAAGCCTATTAATTAG
Upstream 100 bases:
>100_bases AAATTAAACTAATATCATTTGACAAGCAAAACAATATAGTTATATTATTATTTTATATTAAAATTAATAAGTATTAATTT TAATTAATAAGGAGAGTATT
Downstream 100 bases:
>100_bases CAATAAAAACAAAAAAATACATTGCACTTGATATTTTTTTAAAGAGAAGTTAATTCTTCTCTTTTTTTTACTAACTTAAT TAGAGTCTAAACCAAAAACA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 251; Mature: 250
Protein sequence:
>251_residues MTKTKLNIIKVNIVVIILTLICISCAVDKIDLEQKNQNFENADPLNKKNQNFENADPLNKKNQKTKASKLETAAKNLENQ NKQEYIKINEIDAQGINFLATFKADEKDNLSQYEEMQIKRTIYSSLNYEKQKINTLKEILETLYNKLQHRYTSKEFIYQI VASIQYDIDRVLCLIKEAIIKDNLHTQNQKESELLMNLDSSLKTRQNFAKKLNETIDDYNKDSKNIQTNVDALATYMKEN YKTLDSFKPIN
Sequences:
>Translated_251_residues MTKTKLNIIKVNIVVIILTLICISCAVDKIDLEQKNQNFENADPLNKKNQNFENADPLNKKNQKTKASKLETAAKNLENQ NKQEYIKINEIDAQGINFLATFKADEKDNLSQYEEMQIKRTIYSSLNYEKQKINTLKEILETLYNKLQHRYTSKEFIYQI VASIQYDIDRVLCLIKEAIIKDNLHTQNQKESELLMNLDSSLKTRQNFAKKLNETIDDYNKDSKNIQTNVDALATYMKEN YKTLDSFKPIN >Mature_250_residues TKTKLNIIKVNIVVIILTLICISCAVDKIDLEQKNQNFENADPLNKKNQNFENADPLNKKNQKTKASKLETAAKNLENQN KQEYIKINEIDAQGINFLATFKADEKDNLSQYEEMQIKRTIYSSLNYEKQKINTLKEILETLYNKLQHRYTSKEFIYQIV ASIQYDIDRVLCLIKEAIIKDNLHTQNQKESELLMNLDSSLKTRQNFAKKLNETIDDYNKDSKNIQTNVDALATYMKENY KTLDSFKPIN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 29302; Mature: 29171
Theoretical pI: Translated: 8.68; Mature: 8.68
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTKTKLNIIKVNIVVIILTLICISCAVDKIDLEQKNQNFENADPLNKKNQNFENADPLNK CCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC KNQKTKASKLETAAKNLENQNKQEYIKINEIDAQGINFLATFKADEKDNLSQYEEMQIKR CHHHHHHHHHHHHHHHHHCCCHHHEEEEECCCCCCCCEEEEECCCCCCHHHHHHHHHHHH TIYSSLNYEKQKINTLKEILETLYNKLQHRYTSKEFIYQIVASIQYDIDRVLCLIKEAII HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH KDNLHTQNQKESELLMNLDSSLKTRQNFAKKLNETIDDYNKDSKNIQTNVDALATYMKEN HCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH YKTLDSFKPIN HHHHHCCCCCC >Mature Secondary Structure TKTKLNIIKVNIVVIILTLICISCAVDKIDLEQKNQNFENADPLNKKNQNFENADPLNK CCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC KNQKTKASKLETAAKNLENQNKQEYIKINEIDAQGINFLATFKADEKDNLSQYEEMQIKR CHHHHHHHHHHHHHHHHHCCCHHHEEEEECCCCCCCCEEEEECCCCCCHHHHHHHHHHHH TIYSSLNYEKQKINTLKEILETLYNKLQHRYTSKEFIYQIVASIQYDIDRVLCLIKEAII HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH KDNLHTQNQKESELLMNLDSSLKTRQNFAKKLNETIDDYNKDSKNIQTNVDALATYMKEN HCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH YKTLDSFKPIN HHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA