| Definition | Listeria welshimeri serovar 6b str. SLCC5334, complete genome. |
|---|---|
| Accession | NC_008555 |
| Length | 2,814,130 |
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The map label for this gene is yfeW [H]
Identifier: 116873351
GI number: 116873351
Start: 1965419
End: 1966423
Strand: Direct
Name: yfeW [H]
Synonym: lwe1935
Alternate gene names: 116873351
Gene position: 1965419-1966423 (Clockwise)
Preceding gene: 116873350
Following gene: 116873352
Centisome position: 69.84
GC content: 37.51
Gene sequence:
>1005_bases ATGTTCTATAAAACAAAGCACGCGCTTGATAGGCTTGTTCAAAACGGTTCTACCCCAGGAATTAGTTATCAAATTAAAAC AAAAGATACAGAAGAAAATAATATAATGGGGCTGAAATCTGTTTTTCCAGAAGCAGAGATTCTCCCTAGGTCTATAGAAA ATATTTACGATATCGCTTCTCTAACCAAAGTAATTGCTACAACGACACGTATATTACAACTTGTGGAGCAACAACAGCTT CAATTAGAAGATCCAGTTCAATCCTACCTATCAGATTTTCGGTTTGATGACGTTACTATTTTGCATTTACTCACTCATAG CTCTGGACTAGCGCAAAATATACCTAACTTCCTAATGGAAACTAAAGAAGATGTTAAAAGATATGTTTATGCAACGCCGC AAATAAATCCTTCTGGAACAAATGTCACGTACGCCGATGCCAATTTTCTACTTCTCGGTTATTTGATTAATCAATTGGAT GGTAATTACGAACAGTCCATCCAAAAAAACATACTAGAACCACTGCAAATGACTCATTCCAACTTTCATCCTACTAATAA AAATCAAGTCATTCCAACCGAACTCGACCAAAAACGCGGCTTAATTCAAGGAGAAGCACATGATTTCAAGGCTTGGATAG CGAAGTCAAATACAGGTCACGCGGGGCTTTTTAGTACATTAGCGGATCTTTCCAAATTTCGTGATGCACTTATTCTACAA AACGGCTCCCCTATCCTTTCAGAAAAAACAGTACAATTAATGCAAACTAATCACACACCAGGCCTAAACAGAACACGTGG ACTTGGATGGGATCTTCATGGTGATTCTGTTTTATATCACACTGGATTCACTGGCACATTTATGGTGCTCGATTTAAAAC ACCAAGCAAGCCTTATCGTTTTATCTAACCGAGTCCACCCAAGCCGTGCCAATCCAAATTTCGTCTTAAAAAGAGAGAGC ATTGTTGATGTTTTTTTAGAAGAAGTTACAGCAATTAGTTTATAA
Upstream 100 bases:
>100_bases ACGAAGCGGTAAAAGAAAATATCCATCAAATCGAATTAACAAACATCCGTGAAGCTGTCGAACGAGAGATGTGGCACCCC ACTTACAAAGGAGTTTAGTT
Downstream 100 bases:
>100_bases GCTAAACTTCCTAAGAGTGTATACAAAACGAGAAATCATTTTACCTACACTCTATGACTTTTTATTTTTTGCTTTTAGTA TAGAAAAAGAAGCAGGAATC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 334; Mature: 334
Protein sequence:
>334_residues MFYKTKHALDRLVQNGSTPGISYQIKTKDTEENNIMGLKSVFPEAEILPRSIENIYDIASLTKVIATTTRILQLVEQQQL QLEDPVQSYLSDFRFDDVTILHLLTHSSGLAQNIPNFLMETKEDVKRYVYATPQINPSGTNVTYADANFLLLGYLINQLD GNYEQSIQKNILEPLQMTHSNFHPTNKNQVIPTELDQKRGLIQGEAHDFKAWIAKSNTGHAGLFSTLADLSKFRDALILQ NGSPILSEKTVQLMQTNHTPGLNRTRGLGWDLHGDSVLYHTGFTGTFMVLDLKHQASLIVLSNRVHPSRANPNFVLKRES IVDVFLEEVTAISL
Sequences:
>Translated_334_residues MFYKTKHALDRLVQNGSTPGISYQIKTKDTEENNIMGLKSVFPEAEILPRSIENIYDIASLTKVIATTTRILQLVEQQQL QLEDPVQSYLSDFRFDDVTILHLLTHSSGLAQNIPNFLMETKEDVKRYVYATPQINPSGTNVTYADANFLLLGYLINQLD GNYEQSIQKNILEPLQMTHSNFHPTNKNQVIPTELDQKRGLIQGEAHDFKAWIAKSNTGHAGLFSTLADLSKFRDALILQ NGSPILSEKTVQLMQTNHTPGLNRTRGLGWDLHGDSVLYHTGFTGTFMVLDLKHQASLIVLSNRVHPSRANPNFVLKRES IVDVFLEEVTAISL >Mature_334_residues MFYKTKHALDRLVQNGSTPGISYQIKTKDTEENNIMGLKSVFPEAEILPRSIENIYDIASLTKVIATTTRILQLVEQQQL QLEDPVQSYLSDFRFDDVTILHLLTHSSGLAQNIPNFLMETKEDVKRYVYATPQINPSGTNVTYADANFLLLGYLINQLD GNYEQSIQKNILEPLQMTHSNFHPTNKNQVIPTELDQKRGLIQGEAHDFKAWIAKSNTGHAGLFSTLADLSKFRDALILQ NGSPILSEKTVQLMQTNHTPGLNRTRGLGWDLHGDSVLYHTGFTGTFMVLDLKHQASLIVLSNRVHPSRANPNFVLKRES IVDVFLEEVTAISL
Specific function: Unknown
COG id: COG1680
COG function: function code V; Beta-lactamase class C and other penicillin binding proteins
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0214 family [H]
Homologues:
Organism=Escherichia coli, GI87082101, Length=313, Percent_Identity=27.1565495207668, Blast_Score=101, Evalue=8e-23,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012338 - InterPro: IPR001466 - InterPro: IPR022849 [H]
Pfam domain/function: PF00144 Beta-lactamase [H]
EC number: NA
Molecular weight: Translated: 37603; Mature: 37603
Theoretical pI: Translated: 6.51; Mature: 6.51
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFYKTKHALDRLVQNGSTPGISYQIKTKDTEENNIMGLKSVFPEAEILPRSIENIYDIAS CCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCEEHHHHCCCHHHHHHHHHHHHHHHH LTKVIATTTRILQLVEQQQLQLEDPVQSYLSDFRFDDVTILHLLTHSSGLAQNIPNFLME HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCEEHHHHCCCCHHHHHHHHHHH TKEDVKRYVYATPQINPSGTNVTYADANFLLLGYLINQLDGNYEQSIQKNILEPLQMTHS HHHHHHHHEEECCCCCCCCCEEEECCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHC NFHPTNKNQVIPTELDQKRGLIQGEAHDFKAWIAKSNTGHAGLFSTLADLSKFRDALILQ CCCCCCCCCCCCCCHHHHCCCCCCCCHHHHHHEECCCCCCHHHHHHHHHHHHHHHHEEEE NGSPILSEKTVQLMQTNHTPGLNRTRGLGWDLHGDSVLYHTGFTGTFMVLDLKHQASLIV CCCCCHHHHHHHHHHCCCCCCCCCCCCCCCEECCCEEEEECCCCEEEEEEEECCCCEEEE LSNRVHPSRANPNFVLKRESIVDVFLEEVTAISL EECCCCCCCCCCCEEEEHHHHHHHHHHHHHHHCC >Mature Secondary Structure MFYKTKHALDRLVQNGSTPGISYQIKTKDTEENNIMGLKSVFPEAEILPRSIENIYDIAS CCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCEEHHHHCCCHHHHHHHHHHHHHHHH LTKVIATTTRILQLVEQQQLQLEDPVQSYLSDFRFDDVTILHLLTHSSGLAQNIPNFLME HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCEEHHHHCCCCHHHHHHHHHHH TKEDVKRYVYATPQINPSGTNVTYADANFLLLGYLINQLDGNYEQSIQKNILEPLQMTHS HHHHHHHHEEECCCCCCCCCEEEECCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHC NFHPTNKNQVIPTELDQKRGLIQGEAHDFKAWIAKSNTGHAGLFSTLADLSKFRDALILQ CCCCCCCCCCCCCCHHHHCCCCCCCCHHHHHHEECCCCCCHHHHHHHHHHHHHHHHEEEE NGSPILSEKTVQLMQTNHTPGLNRTRGLGWDLHGDSVLYHTGFTGTFMVLDLKHQASLIV CCCCCHHHHHHHHHHCCCCCCCCCCCCCCCEECCCEEEEECCCCEEEEEEEECCCCEEEE LSNRVHPSRANPNFVLKRESIVDVFLEEVTAISL EECCCCCCCCCCCEEEEHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA