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The map label for this gene is ymfH [H]

Identifier: 116872825

GI number: 116872825

Start: 1399088

End: 1400374

Strand: Direct

Name: ymfH [H]

Synonym: lwe1409

Alternate gene names: 116872825

Gene position: 1399088-1400374 (Clockwise)

Preceding gene: 116872824

Following gene: 116872826

Centisome position: 49.72

GC content: 34.11

Gene sequence:

>1287_bases
ATGGAAAAAATCACATTTGAGCAAGTAAAAGAAGCTGTATTTCATGAAAAAATGGCAAATGGTTTACAAGTTTATCTTCT
TCCAAAACAAGGATTTAGTAAAACCTATGCTGTTTTTACAACTAATTATGGCGCAATTGATAATAATTTCGTACCAATTG
GTGAAACGGAATTCACTAAAGTTCCAGATGGTATTGCCCATTTCTTAGAACATAAAATGTTTGAAAAAGAAGACGGCGAT
GTTTTCTTTAAATTCGGTGAAAAAGGCGCGTTCACAAATGCTTTTACTTCTTTTACAAAAACAGCCTATCTTTTTTCAAG
CACTTCTCGTGTGGAAGAAAACTTGGAAACATTAATTGATTTCGTACAAGCACCTTATTTTACAGAAGAAACAGTTGAAA
AAGAAAAAGGTATTATTGGCCAAGAAATCAGAATGTATGATGATGATCCAGATTTTCGTGCTTATTTTGGTGTGATTGAA
AATATGTATCATAATCATCCCGTAAAAATTGATATCGCAGGTACAGTCGAGTCTATTGCAGAAATTAATAAAGATTTACT
CTACCTTTGCTATAACACATTCTATCATCCTAGTAATATGGTGCTTTTCGTTGTAGGTAATTTAGAACCAGAACAAATGA
TGGACCAAATTCGTGCCAATCAAGCAAAAAAAGATTTTGCCGAAGCTGCGCCAATCAAGCGTCATTTCCCTGAAGAACCA
AAAACTGTTTCAGTAAAAGAACGTAAAATACATTTCCCAGTGCAAATTGCAAAAAATTTGGTGGGCATTAAAGAAGATAT
CGGTTCTTTAGAAGGGCAAGCAGCTATCAAACAAGAAATTATTGGTGATGTAGCGCTCGAGATGTTATTTGGCACAACCT
CTGATACCTATCTGGAATTGTATAATAAAGGTATAATTGACGATACTTTTGGATACGACTACACACTTCAAGATAGTTTT
TCGTTCGTGCTTGTAGGTGGCGATGCGAAAGACCCTGATAAACAAACTGCGAAAATCATTGAAGCGATAAAAAAAGCAGC
TAAAAATGGTTTAAATGAAGCTGATTTGGCTTTAGTGAAACGTAAACGGATTGGTCAATTTTTGCGATCACTTAACTCAC
CTGAGTTTATTGCCAATCAATTCAGCCAGTATGTAATGAAATCTGCTTCTTTATTTGATATTTTGCCTCTAATGGAAACA
GTCACATTAGAAGAAGTAAATTCTTTTGTTAAAAATTTAGATGAAGAAGAACGGACTACTAGTTTCCAACTCCTTCCAGA
AAAATAA

Upstream 100 bases:

>100_bases
AAAGTAATTAAACAAACAACAAAAGAAGAAGTAGTGGCTGCTATTAACAAAATCAAACCCGACACAACTTATTTCTTGAG
TAAGGGAGGAGAAGAACTTC

Downstream 100 bases:

>100_bases
ACATATTTATGCCATTTTTTCTTTTTTTAGTATAAAAAATGGCATAAATTCTTAAGTCATGCTATCATAAAAGAAATAGA
CTGGAAAGGGTTGCCTTTTT

Product: M16 family metallopeptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 428; Mature: 428

Protein sequence:

>428_residues
MEKITFEQVKEAVFHEKMANGLQVYLLPKQGFSKTYAVFTTNYGAIDNNFVPIGETEFTKVPDGIAHFLEHKMFEKEDGD
VFFKFGEKGAFTNAFTSFTKTAYLFSSTSRVEENLETLIDFVQAPYFTEETVEKEKGIIGQEIRMYDDDPDFRAYFGVIE
NMYHNHPVKIDIAGTVESIAEINKDLLYLCYNTFYHPSNMVLFVVGNLEPEQMMDQIRANQAKKDFAEAAPIKRHFPEEP
KTVSVKERKIHFPVQIAKNLVGIKEDIGSLEGQAAIKQEIIGDVALEMLFGTTSDTYLELYNKGIIDDTFGYDYTLQDSF
SFVLVGGDAKDPDKQTAKIIEAIKKAAKNGLNEADLALVKRKRIGQFLRSLNSPEFIANQFSQYVMKSASLFDILPLMET
VTLEEVNSFVKNLDEEERTTSFQLLPEK

Sequences:

>Translated_428_residues
MEKITFEQVKEAVFHEKMANGLQVYLLPKQGFSKTYAVFTTNYGAIDNNFVPIGETEFTKVPDGIAHFLEHKMFEKEDGD
VFFKFGEKGAFTNAFTSFTKTAYLFSSTSRVEENLETLIDFVQAPYFTEETVEKEKGIIGQEIRMYDDDPDFRAYFGVIE
NMYHNHPVKIDIAGTVESIAEINKDLLYLCYNTFYHPSNMVLFVVGNLEPEQMMDQIRANQAKKDFAEAAPIKRHFPEEP
KTVSVKERKIHFPVQIAKNLVGIKEDIGSLEGQAAIKQEIIGDVALEMLFGTTSDTYLELYNKGIIDDTFGYDYTLQDSF
SFVLVGGDAKDPDKQTAKIIEAIKKAAKNGLNEADLALVKRKRIGQFLRSLNSPEFIANQFSQYVMKSASLFDILPLMET
VTLEEVNSFVKNLDEEERTTSFQLLPEK
>Mature_428_residues
MEKITFEQVKEAVFHEKMANGLQVYLLPKQGFSKTYAVFTTNYGAIDNNFVPIGETEFTKVPDGIAHFLEHKMFEKEDGD
VFFKFGEKGAFTNAFTSFTKTAYLFSSTSRVEENLETLIDFVQAPYFTEETVEKEKGIIGQEIRMYDDDPDFRAYFGVIE
NMYHNHPVKIDIAGTVESIAEINKDLLYLCYNTFYHPSNMVLFVVGNLEPEQMMDQIRANQAKKDFAEAAPIKRHFPEEP
KTVSVKERKIHFPVQIAKNLVGIKEDIGSLEGQAAIKQEIIGDVALEMLFGTTSDTYLELYNKGIIDDTFGYDYTLQDSF
SFVLVGGDAKDPDKQTAKIIEAIKKAAKNGLNEADLALVKRKRIGQFLRSLNSPEFIANQFSQYVMKSASLFDILPLMET
VTLEEVNSFVKNLDEEERTTSFQLLPEK

Specific function: Unknown

COG id: COG0612

COG function: function code R; Predicted Zn-dependent peptidases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M16 family [H]

Homologues:

Organism=Escherichia coli, GI1787770, Length=191, Percent_Identity=25.6544502617801, Blast_Score=65, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011249
- InterPro:   IPR011237
- InterPro:   IPR011765
- InterPro:   IPR007863 [H]

Pfam domain/function: PF00675 Peptidase_M16; PF05193 Peptidase_M16_C [H]

EC number: 3.4.99.- [C]

Molecular weight: Translated: 48674; Mature: 48674

Theoretical pI: Translated: 4.62; Mature: 4.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKITFEQVKEAVFHEKMANGLQVYLLPKQGFSKTYAVFTTNYGAIDNNFVPIGETEFTK
CCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCEEEEEEECCCCCCCCEECCCCCCHHC
VPDGIAHFLEHKMFEKEDGDVFFKFGEKGAFTNAFTSFTKTAYLFSSTSRVEENLETLID
CCHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FVQAPYFTEETVEKEKGIIGQEIRMYDDDPDFRAYFGVIENMYHNHPVKIDIAGTVESIA
HHHCCCCCHHHHHHHCCCCCCHHEECCCCCCHHHHHHHHHHHHCCCCEEEEECCHHHHHH
EINKDLLYLCYNTFYHPSNMVLFVVGNLEPEQMMDQIRANQAKKDFAEAAPIKRHFPEEP
HHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCC
KTVSVKERKIHFPVQIAKNLVGIKEDIGSLEGQAAIKQEIIGDVALEMLFGTTSDTYLEL
CEEEEECCEECCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHH
YNKGIIDDTFGYDYTLQDSFSFVLVGGDAKDPDKQTAKIIEAIKKAAKNGLNEADLALVK
HHCCCCCCCCCCCEEECCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHH
RKRIGQFLRSLNSPEFIANQFSQYVMKSASLFDILPLMETVTLEEVNSFVKNLDEEERTT
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCC
SFQLLPEK
CEEECCCC
>Mature Secondary Structure
MEKITFEQVKEAVFHEKMANGLQVYLLPKQGFSKTYAVFTTNYGAIDNNFVPIGETEFTK
CCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCEEEEEEECCCCCCCCEECCCCCCHHC
VPDGIAHFLEHKMFEKEDGDVFFKFGEKGAFTNAFTSFTKTAYLFSSTSRVEENLETLID
CCHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FVQAPYFTEETVEKEKGIIGQEIRMYDDDPDFRAYFGVIENMYHNHPVKIDIAGTVESIA
HHHCCCCCHHHHHHHCCCCCCHHEECCCCCCHHHHHHHHHHHHCCCCEEEEECCHHHHHH
EINKDLLYLCYNTFYHPSNMVLFVVGNLEPEQMMDQIRANQAKKDFAEAAPIKRHFPEEP
HHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCC
KTVSVKERKIHFPVQIAKNLVGIKEDIGSLEGQAAIKQEIIGDVALEMLFGTTSDTYLEL
CEEEEECCEECCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHH
YNKGIIDDTFGYDYTLQDSFSFVLVGGDAKDPDKQTAKIIEAIKKAAKNGLNEADLALVK
HHCCCCCCCCCCCEEECCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHH
RKRIGQFLRSLNSPEFIANQFSQYVMKSASLFDILPLMETVTLEEVNSFVKNLDEEERTT
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCC
SFQLLPEK
CEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Zn [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Hydrolase; Acting on peptide bonds (Peptidases); Endopeptidases of unknown catalytic mechanism [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]