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The map label for this gene is yqxC [H]

Identifier: 116872797

GI number: 116872797

Start: 1368147

End: 1368971

Strand: Direct

Name: yqxC [H]

Synonym: lwe1381

Alternate gene names: 116872797

Gene position: 1368147-1368971 (Clockwise)

Preceding gene: 116872796

Following gene: 116872798

Centisome position: 48.62

GC content: 39.27

Gene sequence:

>825_bases
ATGACAATAAAAAAAGAACGTGCAGATATTCTGTTAGTAGAACAAGGACTATTTGAAACAAGAGAAAAAGCGAAACGGGC
CATTATGGCAGGAATTGTGTATCGAAAAGAGGAACGCGTAGATAAACCAGGAGAAAAAATCCCGGTTGATAGCGAACTTC
AAGTAAAAGGAAAGCAGATGCCGTATGTAAGTCGTGGCGGTTTAAAATTAGAAAAGGCCTTGCAAATATTTGATTTCGAT
GTAAAAGACAAATTAATGCTTGATATTGGGGCATCCACTGGTGGCTTCACAGATTGCGCCTTGCAAAACGGAGCAAAACA
TTCTTATGCACTCGATGTTGGTTATAATCAACTTGCTTGGAAATTGCGCAATGACGAACGAGTTACAGTGATGGAACGAA
CGAATTTCCGCCATGTAACTGAAGCAGACTTTACTGAAGGGTTAGCTGATTTTGCAACAATTGATGTTTCCTTTATTTCA
CTTAAACTGATTTTGCCTGTACTCAGAACAGTGCTTGTAGTTGGTGGTGATGTGATGACGCTAATCAAGCCACAATTTGA
GGCGGGAAGAGAACAAGTTGGTAAAAAAGGAATTGTCCGCGATCCAGCAGTACATGCTGCTGTGGTAGAAAACATCGTTC
AATTTGCGCTTGATAATGGGTATGATTTGATGGGACTAGATTTCTCACCAATTACAGGTGGAGAGGGAAACATCGAATTT
ATTGCGCATCTTAAGTGGACTGGAGAAGAATCAGGGAAAAGTTATTTAGCTAAAGATGCAATTCCAACACTAATAGCAAA
AGCACATACTAAATTAGATAAATAA

Upstream 100 bases:

>100_bases
TCCCTGTAATTCTTGAATCGTATGGCATATCGGAAGCTGGAATTGAATTAAAAATAAAAGAAATGCTCGCACAAAGCGAG
AAGTTAAGGGCGAAGAGACT

Downstream 100 bases:

>100_bases
TGTATACCGGAAAGCAAGGATGTTTTCCGGTTTTTGCTTTTACCATGCTATTTAACAGTGATTACTCATGTATTTACGAT
GTATAGAGTATAAAAGTAAC

Product: hemolysin A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 274; Mature: 273

Protein sequence:

>274_residues
MTIKKERADILLVEQGLFETREKAKRAIMAGIVYRKEERVDKPGEKIPVDSELQVKGKQMPYVSRGGLKLEKALQIFDFD
VKDKLMLDIGASTGGFTDCALQNGAKHSYALDVGYNQLAWKLRNDERVTVMERTNFRHVTEADFTEGLADFATIDVSFIS
LKLILPVLRTVLVVGGDVMTLIKPQFEAGREQVGKKGIVRDPAVHAAVVENIVQFALDNGYDLMGLDFSPITGGEGNIEF
IAHLKWTGEESGKSYLAKDAIPTLIAKAHTKLDK

Sequences:

>Translated_274_residues
MTIKKERADILLVEQGLFETREKAKRAIMAGIVYRKEERVDKPGEKIPVDSELQVKGKQMPYVSRGGLKLEKALQIFDFD
VKDKLMLDIGASTGGFTDCALQNGAKHSYALDVGYNQLAWKLRNDERVTVMERTNFRHVTEADFTEGLADFATIDVSFIS
LKLILPVLRTVLVVGGDVMTLIKPQFEAGREQVGKKGIVRDPAVHAAVVENIVQFALDNGYDLMGLDFSPITGGEGNIEF
IAHLKWTGEESGKSYLAKDAIPTLIAKAHTKLDK
>Mature_273_residues
TIKKERADILLVEQGLFETREKAKRAIMAGIVYRKEERVDKPGEKIPVDSELQVKGKQMPYVSRGGLKLEKALQIFDFDV
KDKLMLDIGASTGGFTDCALQNGAKHSYALDVGYNQLAWKLRNDERVTVMERTNFRHVTEADFTEGLADFATIDVSFISL
KLILPVLRTVLVVGGDVMTLIKPQFEAGREQVGKKGIVRDPAVHAAVVENIVQFALDNGYDLMGLDFSPITGGEGNIEFI
AHLKWTGEESGKSYLAKDAIPTLIAKAHTKLDK

Specific function: Unknown

COG id: COG1189

COG function: function code J; Predicted rRNA methylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004538
- InterPro:   IPR002877
- InterPro:   IPR002942 [H]

Pfam domain/function: PF01728 FtsJ; PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 30367; Mature: 30236

Theoretical pI: Translated: 6.69; Mature: 6.69

Prosite motif: PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIKKERADILLVEQGLFETREKAKRAIMAGIVYRKEERVDKPGEKIPVDSELQVKGKQM
CCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCC
PYVSRGGLKLEKALQIFDFDVKDKLMLDIGASTGGFTDCALQNGAKHSYALDVGYNQLAW
CEECCCCCCHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHHCCCCCCEEEEECCCCEEEE
KLRNDERVTVMERTNFRHVTEADFTEGLADFATIDVSFISLKLILPVLRTVLVVGGDVMT
EECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEE
LIKPQFEAGREQVGKKGIVRDPAVHAAVVENIVQFALDNGYDLMGLDFSPITGGEGNIEF
EECCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCEEE
IAHLKWTGEESGKSYLAKDAIPTLIAKAHTKLDK
EEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TIKKERADILLVEQGLFETREKAKRAIMAGIVYRKEERVDKPGEKIPVDSELQVKGKQM
CCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCC
PYVSRGGLKLEKALQIFDFDVKDKLMLDIGASTGGFTDCALQNGAKHSYALDVGYNQLAW
CEECCCCCCHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHHCCCCCCEEEEECCCCEEEE
KLRNDERVTVMERTNFRHVTEADFTEGLADFATIDVSFISLKLILPVLRTVLVVGGDVMT
EECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEE
LIKPQFEAGREQVGKKGIVRDPAVHAAVVENIVQFALDNGYDLMGLDFSPITGGEGNIEF
EECCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCEEE
IAHLKWTGEESGKSYLAKDAIPTLIAKAHTKLDK
EEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377; 2507400 [H]