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The map label for this gene is glnR [H]

Identifier: 116872729

GI number: 116872729

Start: 1305318

End: 1305686

Strand: Direct

Name: glnR [H]

Synonym: lwe1313

Alternate gene names: 116872729

Gene position: 1305318-1305686 (Clockwise)

Preceding gene: 116872728

Following gene: 116872730

Centisome position: 46.38

GC content: 37.13

Gene sequence:

>369_bases
GTGAGTGAAAAGGAAATCCGGAGATCCATGCCGCTGTTTCCAATTGGGCCCGTAATGAAGCTAACTGATCTCACTGCTAG
ACAAATTCGCTACTATGAAGACCAAGGATTAATCCATCCAGCACGAAATCAAGGAAATCACCGTTTGTACTCACTTCAAG
ACATTGATGTTTTGCTAGAGATAAAAGATTATTTGAATGATGGTCTGAATATTGCGGGAATTAAGAAAATGTATCAAATG
CAACAAAAAGAATCAAAAGAACCTTTGACAGATGACGATGTACGTAAAATACTTAGAAAAGAAATGCAACAAGCTGGTCG
TTTTGTAAAACAAGATGCCACAGGAAAACAACAATTACCAAGGTTTTAA

Upstream 100 bases:

>100_bases
ACATGTTAGATTATCTTACATAAATTTGACAAAACATCTAACGTACATTATAATGCTACTATCATCAAAAAAAATAAGGA
TGTTTTGAGGGGGAATTGTC

Downstream 100 bases:

>100_bases
AAAAACTAGAAGAGGTATTTACTTTATTTAGAAGTTAATATAATTAGATTATTTAGGAGGAATTTAGATTATGGCAAAAT
ATACAAAAGAAGACATTTTC

Product: transcriptional repressor GlnR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 122; Mature: 121

Protein sequence:

>122_residues
MSEKEIRRSMPLFPIGPVMKLTDLTARQIRYYEDQGLIHPARNQGNHRLYSLQDIDVLLEIKDYLNDGLNIAGIKKMYQM
QQKESKEPLTDDDVRKILRKEMQQAGRFVKQDATGKQQLPRF

Sequences:

>Translated_122_residues
MSEKEIRRSMPLFPIGPVMKLTDLTARQIRYYEDQGLIHPARNQGNHRLYSLQDIDVLLEIKDYLNDGLNIAGIKKMYQM
QQKESKEPLTDDDVRKILRKEMQQAGRFVKQDATGKQQLPRF
>Mature_121_residues
SEKEIRRSMPLFPIGPVMKLTDLTARQIRYYEDQGLIHPARNQGNHRLYSLQDIDVLLEIKDYLNDGLNIAGIKKMYQMQ
QKESKEPLTDDDVRKILRKEMQQAGRFVKQDATGKQQLPRF

Specific function: Represses many genes including the glnRA operon and tnrA during growth with nitrogen excess [H]

COG id: COG0789

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH merR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009061
- InterPro:   IPR000551 [H]

Pfam domain/function: PF00376 MerR [H]

EC number: NA

Molecular weight: Translated: 14334; Mature: 14203

Theoretical pI: Translated: 9.87; Mature: 9.87

Prosite motif: PS00552 HTH_MERR_1 ; PS50937 HTH_MERR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEKEIRRSMPLFPIGPVMKLTDLTARQIRYYEDQGLIHPARNQGNHRLYSLQDIDVLLE
CCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEHHHHHHHHH
IKDYLNDGLNIAGIKKMYQMQQKESKEPLTDDDVRKILRKEMQQAGRFVKQDATGKQQLP
HHHHHCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
RF
CC
>Mature Secondary Structure 
SEKEIRRSMPLFPIGPVMKLTDLTARQIRYYEDQGLIHPARNQGNHRLYSLQDIDVLLE
CHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEHHHHHHHHH
IKDYLNDGLNIAGIKKMYQMQQKESKEPLTDDDVRKILRKEMQQAGRFVKQDATGKQQLP
HHHHHCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
RF
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2906311; 2573733; 1677938; 9384377 [H]