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The map label for this gene is 116872620

Identifier: 116872620

GI number: 116872620

Start: 1213781

End: 1214467

Strand: Direct

Name: 116872620

Synonym: lwe1204

Alternate gene names: NA

Gene position: 1213781-1214467 (Clockwise)

Preceding gene: 116872619

Following gene: 116872621

Centisome position: 43.13

GC content: 32.46

Gene sequence:

>687_bases
ATGCGAAAAAATTGGACGGATGAGGAAATTAGAATTTTGCAGAATAATTACGAATACGTAGACACTGAAATAATAGCTAA
TTTTTTAAATCGCTCATATCATTCAATAAAAAACAAAGCGACGCGACTTGGGATAAGTAAAAATTATGATTGGACAGAAG
ATGAGGATATTTATTTAGAGTATTTTGTTTATGAGAACGACGACAATATTAGCAAAGCTGCCGAATTTTTAGGACGTACA
AAAGAGGCTGTTTTAAACAGATTAGTGAAGTTAAGAAAAAGAGATTCTTCAGTTTCTTTTATTAGGCGTCCGTGGACCAA
AAAAGAAGATGAGATACTAAAAAATAATTATATTATTATGTCGAATGACCAATTAGCTGAACGATTAAGAAGAACAAAAG
CCTCTGTAGCGGCAAGAAAGATACTGTTAGGACTGGCAAACAAACACATGTCTAAAGAAGATGACAAAATGATTCGTCAT
CTTGGAAATCAAGGGTACACAATCAAAGAGATTTCAGCAGAAATGAATTTGTCTTATTGCTTAGTTAAAAACTATATAAG
AAATCACAGAATCAATTATAGAAGGGAATCAAAAAACGAGATGAATGGTTGGCGAAAAGAAGCAGATGCGACCTATTCGC
ATTATATTAACTCTAAAAAATCAAGGAGGAACAAGCATGAGATTTAA

Upstream 100 bases:

>100_bases
CACACAAGAAACCTATGCGCATGTGTTAGACGAATTACAAAAGAAAGATGATCAAAAAATGTTATCTGTTTTGATGCAGA
TTGCTTAGCGAGGTGATTAG

Downstream 100 bases:

>100_bases
AAAAGGCGATAAAGTAGAGTTTATTTACGGAGGAACATTGACACAAGGTGTAGTTAATGAAATAAGAGCAACTAATCATA
ATATATCCTATCAAATTGTA

Product: DNA-binding protein, putative

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 228; Mature: 228

Protein sequence:

>228_residues
MRKNWTDEEIRILQNNYEYVDTEIIANFLNRSYHSIKNKATRLGISKNYDWTEDEDIYLEYFVYENDDNISKAAEFLGRT
KEAVLNRLVKLRKRDSSVSFIRRPWTKKEDEILKNNYIIMSNDQLAERLRRTKASVAARKILLGLANKHMSKEDDKMIRH
LGNQGYTIKEISAEMNLSYCLVKNYIRNHRINYRRESKNEMNGWRKEADATYSHYINSKKSRRNKHEI

Sequences:

>Translated_228_residues
MRKNWTDEEIRILQNNYEYVDTEIIANFLNRSYHSIKNKATRLGISKNYDWTEDEDIYLEYFVYENDDNISKAAEFLGRT
KEAVLNRLVKLRKRDSSVSFIRRPWTKKEDEILKNNYIIMSNDQLAERLRRTKASVAARKILLGLANKHMSKEDDKMIRH
LGNQGYTIKEISAEMNLSYCLVKNYIRNHRINYRRESKNEMNGWRKEADATYSHYINSKKSRRNKHEI
>Mature_228_residues
MRKNWTDEEIRILQNNYEYVDTEIIANFLNRSYHSIKNKATRLGISKNYDWTEDEDIYLEYFVYENDDNISKAAEFLGRT
KEAVLNRLVKLRKRDSSVSFIRRPWTKKEDEILKNNYIIMSNDQLAERLRRTKASVAARKILLGLANKHMSKEDDKMIRH
LGNQGYTIKEISAEMNLSYCLVKNYIRNHRINYRRESKNEMNGWRKEADATYSHYINSKKSRRNKHEI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To L.innocua lin2408 and lin2600 [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR001005 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 27368; Mature: 27368

Theoretical pI: Translated: 10.04; Mature: 10.04

Prosite motif: PS00037 MYB_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKNWTDEEIRILQNNYEYVDTEIIANFLNRSYHSIKNKATRLGISKNYDWTEDEDIYLE
CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEE
YFVYENDDNISKAAEFLGRTKEAVLNRLVKLRKRDSSVSFIRRPWTKKEDEILKNNYIIM
EEEEECCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCHHHHHHCCCEEE
SNDQLAERLRRTKASVAARKILLGLANKHMSKEDDKMIRHLGNQGYTIKEISAEMNLSYC
ECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHCCHHHH
LVKNYIRNHRINYRRESKNEMNGWRKEADATYSHYINSKKSRRNKHEI
HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCC
>Mature Secondary Structure
MRKNWTDEEIRILQNNYEYVDTEIIANFLNRSYHSIKNKATRLGISKNYDWTEDEDIYLE
CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEE
YFVYENDDNISKAAEFLGRTKEAVLNRLVKLRKRDSSVSFIRRPWTKKEDEILKNNYIIM
EEEEECCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCHHHHHHCCCEEE
SNDQLAERLRRTKASVAARKILLGLANKHMSKEDDKMIRHLGNQGYTIKEISAEMNLSYC
ECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHCCHHHH
LVKNYIRNHRINYRRESKNEMNGWRKEADATYSHYINSKKSRRNKHEI
HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11679669 [H]