| Definition | Listeria welshimeri serovar 6b str. SLCC5334, complete genome. |
|---|---|
| Accession | NC_008555 |
| Length | 2,814,130 |
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The map label for this gene is polX [H]
Identifier: 116872602
GI number: 116872602
Start: 1196191
End: 1197903
Strand: Direct
Name: polX [H]
Synonym: lwe1186
Alternate gene names: 116872602
Gene position: 1196191-1197903 (Clockwise)
Preceding gene: 116872601
Following gene: 116872603
Centisome position: 42.51
GC content: 37.01
Gene sequence:
>1713_bases ATGGCTACCAATAAAAAAGAAATTATTCGTTTACTTGAAGAAATTGCCACTTATATGGAACTAAAAGGAGAAAATAGCTT TAAAATATCTGCTTTCCGAAAAGCTGCACAAGCAATTGAATTAGATAGCAGAAGCCTTTCTGAAATAGATGTTTTTACGA AGATTAGCGGTATCGGAAAAACAACAGGCGAAATTATTCAACGCTATTTAGATAGCGGAGAATGTCCAGAACTCGAGGAA CTAAAAAAGGAAGTACCTGCTGGCCTCGTTCCACTTTTAGATGTGCCAGGGCTTGGAGGGAAGAAACTATCACGCCTTTA TCATGAACTTGGCGTGGTGGATAAAGAAACACTACTTCAAGAAGCAGAAAACGGTCATATCGAAGCATTAAAAGGTTTCG GTAAAAAGTCTGCGGAAAAAATGGCTGAAGCTGTCCGCGAAATGGGCGAACGACCTGATAGATATCCACTAAATGATGTG TTACCAATCATCCAAGAAGTAGAGGCTTACCTTGCTGAAATTTCTTCCATCGAAACGTTTGCACAGGCAGGTAGTTTACG TAGATTGCGGGAAACGGTCAAAGATTTAGATTACGTTATTGCCACAGAAAAACCAGACGAAGTGCAAAAAGCTTTACTTG CGTTTCCATTAATTACAGATGTTACTGGTGCAGGAGAAACAAAAGTATCTGCTGTATTAGAAAATAATATTACTATTTCA GTAGATTTTCGCTTAGTAGAAAAGAAAGCTTTTGCAACCACACTGCATCATTTTACTGGTTCCAAAGATCATAATATTAA AATGCGCCAGTTAGCTAAACAATCTAATGAAAAAATAAGCGAATATGGTGTGGAGCAGGAAGACGGTAATGTTCGTCATT TTCAGTCAGAAAAAACGTTTTTTGAGCATTTTAATATTCCATTTTTACCTCCTGAAGTCCGCCGAGATGGCACAGAAATT GAGCGCGTAACAAAAGATACTAAGTTCCTTGAGTTAAGCGATATTCGGGGTGACTTACACATGCATACAACTTGGTCAGA TGGAGCATATGCGATTCCAGAAATGATTGAAGCATGTATCGCAAAAGGTTATGAATACATGGTAATTACTGATCATGGAA AATTTTTACGAGTAGCAAATGGACTCGACGAAAAAAGACTTTTAGAACAACAAGCTGAAATCAAAAAAGTAGCAGCAAAC TATCCAGAAATTGATGTCTATTCTGGTGTGGAAATGGATATTTTAGCAGATGGTTCTCTTGATTTTGAGGATGAAACATT GAAACAATTGGATTTTGTTATTGCTTCTATTCATTCCAGTTTTCAACAATCAGAAGAAGAAATTATGAAACGATTAAAAA CAGCATGTGAAAATCCATATGTGCGATTAATTGCTCATCCAACTGGTAGAATTGTCGTGAAAAGAAAACCATATCATGTT AATATGAAAGAACTAATTAAGTTAGCGAAAAATACAGGAACTGCTCTGGAATTAAATGCGAATCCTCAGCGCCTAGATTT AAACCGAGAGCATTTAGAAATGGCACATGCGGCCGGGGTTCCCATTGCGATTAATACAGATGCACATGACACAAAACATC TTGATTTCATGTCCATTGGTGTTCGCGCTGCAACGAAAGCTTGGTTAGATAAATCCGCAATCCTGAATACAAAATCAGCA AAAGAATTTCAACAATTTATACAGAATAAATAA
Upstream 100 bases:
>100_bases CCAAAATAAAAGAAACATTCGATACCAGATGTATACTCTTAGCCAATTTTGGATAGGATTTCTCTGGTATTTTTTAATGA CGTTATGGGGAGGAAGAAAG
Downstream 100 bases:
>100_bases CTTTTAAAAAGAAGGATGACTCATGGAAAAAAAAGTAGAAGCCATATTAGAATTTGATAAAATAAAAAAACAGCTTACCG AATTTGCTTCTTCTTCACTA
Product: hypothetical protein
Products: NA
Alternate protein names: DNA polymerase type-X; 3'-5' exodeoxyribonuclease; 3'-5' exonuclease [H]
Number of amino acids: Translated: 570; Mature: 569
Protein sequence:
>570_residues MATNKKEIIRLLEEIATYMELKGENSFKISAFRKAAQAIELDSRSLSEIDVFTKISGIGKTTGEIIQRYLDSGECPELEE LKKEVPAGLVPLLDVPGLGGKKLSRLYHELGVVDKETLLQEAENGHIEALKGFGKKSAEKMAEAVREMGERPDRYPLNDV LPIIQEVEAYLAEISSIETFAQAGSLRRLRETVKDLDYVIATEKPDEVQKALLAFPLITDVTGAGETKVSAVLENNITIS VDFRLVEKKAFATTLHHFTGSKDHNIKMRQLAKQSNEKISEYGVEQEDGNVRHFQSEKTFFEHFNIPFLPPEVRRDGTEI ERVTKDTKFLELSDIRGDLHMHTTWSDGAYAIPEMIEACIAKGYEYMVITDHGKFLRVANGLDEKRLLEQQAEIKKVAAN YPEIDVYSGVEMDILADGSLDFEDETLKQLDFVIASIHSSFQQSEEEIMKRLKTACENPYVRLIAHPTGRIVVKRKPYHV NMKELIKLAKNTGTALELNANPQRLDLNREHLEMAHAAGVPIAINTDAHDTKHLDFMSIGVRAATKAWLDKSAILNTKSA KEFQQFIQNK
Sequences:
>Translated_570_residues MATNKKEIIRLLEEIATYMELKGENSFKISAFRKAAQAIELDSRSLSEIDVFTKISGIGKTTGEIIQRYLDSGECPELEE LKKEVPAGLVPLLDVPGLGGKKLSRLYHELGVVDKETLLQEAENGHIEALKGFGKKSAEKMAEAVREMGERPDRYPLNDV LPIIQEVEAYLAEISSIETFAQAGSLRRLRETVKDLDYVIATEKPDEVQKALLAFPLITDVTGAGETKVSAVLENNITIS VDFRLVEKKAFATTLHHFTGSKDHNIKMRQLAKQSNEKISEYGVEQEDGNVRHFQSEKTFFEHFNIPFLPPEVRRDGTEI ERVTKDTKFLELSDIRGDLHMHTTWSDGAYAIPEMIEACIAKGYEYMVITDHGKFLRVANGLDEKRLLEQQAEIKKVAAN YPEIDVYSGVEMDILADGSLDFEDETLKQLDFVIASIHSSFQQSEEEIMKRLKTACENPYVRLIAHPTGRIVVKRKPYHV NMKELIKLAKNTGTALELNANPQRLDLNREHLEMAHAAGVPIAINTDAHDTKHLDFMSIGVRAATKAWLDKSAILNTKSA KEFQQFIQNK >Mature_569_residues ATNKKEIIRLLEEIATYMELKGENSFKISAFRKAAQAIELDSRSLSEIDVFTKISGIGKTTGEIIQRYLDSGECPELEEL KKEVPAGLVPLLDVPGLGGKKLSRLYHELGVVDKETLLQEAENGHIEALKGFGKKSAEKMAEAVREMGERPDRYPLNDVL PIIQEVEAYLAEISSIETFAQAGSLRRLRETVKDLDYVIATEKPDEVQKALLAFPLITDVTGAGETKVSAVLENNITISV DFRLVEKKAFATTLHHFTGSKDHNIKMRQLAKQSNEKISEYGVEQEDGNVRHFQSEKTFFEHFNIPFLPPEVRRDGTEIE RVTKDTKFLELSDIRGDLHMHTTWSDGAYAIPEMIEACIAKGYEYMVITDHGKFLRVANGLDEKRLLEQQAEIKKVAANY PEIDVYSGVEMDILADGSLDFEDETLKQLDFVIASIHSSFQQSEEEIMKRLKTACENPYVRLIAHPTGRIVVKRKPYHVN MKELIKLAKNTGTALELNANPQRLDLNREHLEMAHAAGVPIAINTDAHDTKHLDFMSIGVRAATKAWLDKSAILNTKSAK EFQQFIQNK
Specific function: Strictly DNA-template-directed DNA polymerase, preferentially acting on DNA structures containing gaps from one to a few nucleotides and bearing a phosphate group at the 5' end of the downstream DNA. The fact that PolX is able to conduct filling of a sing
COG id: COG1796
COG function: function code L; DNA polymerase IV (family X)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: In the C-terminal section; belongs to the PHP family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002054 - InterPro: IPR010996 - InterPro: IPR003583 - InterPro: IPR004013 - InterPro: IPR003141 - InterPro: IPR016195 - InterPro: IPR022311 [H]
Pfam domain/function: PF02811 PHP [H]
EC number: =2.7.7.7 [H]
Molecular weight: Translated: 64181; Mature: 64050
Theoretical pI: Translated: 5.56; Mature: 5.56
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MATNKKEIIRLLEEIATYMELKGENSFKISAFRKAAQAIELDSRSLSEIDVFTKISGIGK CCCCHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCC TTGEIIQRYLDSGECPELEELKKEVPAGLVPLLDVPGLGGKKLSRLYHELGVVDKETLLQ CHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHH EAENGHIEALKGFGKKSAEKMAEAVREMGERPDRYPLNDVLPIIQEVEAYLAEISSIETF HHCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH AQAGSLRRLRETVKDLDYVIATEKPDEVQKALLAFPLITDVTGAGETKVSAVLENNITIS HHHHHHHHHHHHHHHHHEEEECCCHHHHHHHHHHHHHHHHCCCCCCHHHHHEEECCEEEE VDFRLVEKKAFATTLHHFTGSKDHNIKMRQLAKQSNEKISEYGVEQEDGNVRHFQSEKTF EEEEEHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEHHHHHH FEHFNIPFLPPEVRRDGTEIERVTKDTKFLELSDIRGDLHMHTTWSDGAYAIPEMIEACI HHHCCCCCCCHHHHCCCHHHHHHHCCCCEEEEECCCCCEEEEEECCCCCCHHHHHHHHHH AKGYEYMVITDHGKFLRVANGLDEKRLLEQQAEIKKVAANYPEIDVYSGVEMDILADGSL HCCCEEEEEECCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCEEEEEECCCC DFEDETLKQLDFVIASIHSSFQQSEEEIMKRLKTACENPYVRLIAHPTGRIVVKRKPYHV CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEECCCCCC NMKELIKLAKNTGTALELNANPQRLDLNREHLEMAHAAGVPIAINTDAHDTKHLDFMSIG CHHHHHHHHHCCCCEEEECCCCCEECCCHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHH VRAATKAWLDKSAILNTKSAKEFQQFIQNK HHHHHHHHHHHHHHCCCCCHHHHHHHHCCC >Mature Secondary Structure ATNKKEIIRLLEEIATYMELKGENSFKISAFRKAAQAIELDSRSLSEIDVFTKISGIGK CCCHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCC TTGEIIQRYLDSGECPELEELKKEVPAGLVPLLDVPGLGGKKLSRLYHELGVVDKETLLQ CHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHH EAENGHIEALKGFGKKSAEKMAEAVREMGERPDRYPLNDVLPIIQEVEAYLAEISSIETF HHCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH AQAGSLRRLRETVKDLDYVIATEKPDEVQKALLAFPLITDVTGAGETKVSAVLENNITIS HHHHHHHHHHHHHHHHHEEEECCCHHHHHHHHHHHHHHHHCCCCCCHHHHHEEECCEEEE VDFRLVEKKAFATTLHHFTGSKDHNIKMRQLAKQSNEKISEYGVEQEDGNVRHFQSEKTF EEEEEHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEHHHHHH FEHFNIPFLPPEVRRDGTEIERVTKDTKFLELSDIRGDLHMHTTWSDGAYAIPEMIEACI HHHCCCCCCCHHHHCCCHHHHHHHCCCCEEEEECCCCCEEEEEECCCCCCHHHHHHHHHH AKGYEYMVITDHGKFLRVANGLDEKRLLEQQAEIKKVAANYPEIDVYSGVEMDILADGSL HCCCEEEEEECCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCEEEEEECCCC DFEDETLKQLDFVIASIHSSFQQSEEEIMKRLKTACENPYVRLIAHPTGRIVVKRKPYHV CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEECCCCCC NMKELIKLAKNTGTALELNANPQRLDLNREHLEMAHAAGVPIAINTDAHDTKHLDFMSIG CHHHHHHHHHCCCCEEEECCCCCEECCCHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHH VRAATKAWLDKSAILNTKSAKEFQQFIQNK HHHHHHHHHHHHHHCCCCCHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8969504; 9384377 [H]