Click here to switch to the map view.

The map label for this gene is cbiD [H]

Identifier: 116872567

GI number: 116872567

Start: 1161142

End: 1162263

Strand: Direct

Name: cbiD [H]

Synonym: lwe1151

Alternate gene names: 116872567

Gene position: 1161142-1162263 (Clockwise)

Preceding gene: 116872566

Following gene: 116872568

Centisome position: 41.26

GC content: 39.39

Gene sequence:

>1122_bases
ATGGAAGATTTTATTTATTATAATGGCAAAAAATATCGTAAAGGTTATACAACTGGGACATGTGCAGCAGCTGCAGCAAA
AGCGTGTGTCGAAATGATTCTAACCCAAGAAGAAGTAAGTGCAGTGCAAGTTACGACAACTGGTGGAACTATTCTTGAAA
TCCCAGTAGCACATCAACAATTTTCTAAAAAAAGAGCAACTGCAGCAGTTCAAAAAGATGGTGGCGATGATATTGATGCG
ACACACGGAATGTGGATTTTTGTAGATGTGGAATTAACAAATAGCACTGAAGTTGTATTAGATGGTGGTGTTGGAATTGG
TCGAGCGACGCAAAAAGGTATTTCTGTTGCAGTTGGAGAGGCAGCGATAAATCCGGCTCCTCGCAAAAACATTTTAGAAG
CGGTACGAAAATCACTTGGAGAACATCGTGGTGCCAACATTTTAGTTTATGCTCCAGAAGGGGAAGAACGCGCAAAACGA
ACAATGAATAGCAACTTAGGGATTATTGGTGGAATTTCTATTTTAGGAACGACTGGTATTGTTACTCCCATGTCTGATGA
AGGTTGGAAAAAATCGCTGTCAATGGAACTAGAAATGAAACGTAATCAAGGACTCGAGCAAATTATTCTCGTTCCAGGTA
ATTACGGGGATGATTTTGTTCAACATACACTTGGTTTCTCAAGTAATAACATTGTGTCAATGAGTAATTTCGTTGGTTAT
ATGCTAAAAGAAACACAACGCCTTGCCTTCAAAAAAGTACTGATGGTCGGTCATTTTGGCAAACTGGTGAAAGTGTCTGC
GGGAATTTTTACAACATATAGCAAAGATGCAGATGCTCGTGCCGAAATCTTAGTTGCTAATTTAGCTTTACTCGGCGCGC
CATTATCACTTTTACAAGAAGTAGAGAAGTGTAATACGACAGAGGCAGCCGGTGAATTAATTGAAGAAGCTGGTTACACA
CATGTTTATGAAGTGATTGCACAAAAAATAAAAGCAAGGTCAGAACGCTTTTTGAAATTTACAAAACCAAGTGTAGAAAT
TGATGTGGTTACTTTTTCGACGGAGCGTGGATTGCTTGCTACAACGAAAGATATCGATGTATTGCGGGAGGAATGGCAAT
GA

Upstream 100 bases:

>100_bases
CATCCCAGCTATTGTCGCTCGTGGCCGAAAAGGTGGTAGTAATCTTGCGGCGGCTATCATTAATGCAATCTTGATTACGA
TGTAAAGAAGGCGACAAGTA

Downstream 100 bases:

>100_bases
TTACGATTGTTGGAATTGGGCCAGGAGATACGAATTTGCTAATAAATGAAGCAAGACAGGCTTTAAGTTCGGCAGATACA
GTTTATGGATCAAACAGGCA

Product: cobalt-precorrin-6A synthase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 373; Mature: 373

Protein sequence:

>373_residues
MEDFIYYNGKKYRKGYTTGTCAAAAAKACVEMILTQEEVSAVQVTTTGGTILEIPVAHQQFSKKRATAAVQKDGGDDIDA
THGMWIFVDVELTNSTEVVLDGGVGIGRATQKGISVAVGEAAINPAPRKNILEAVRKSLGEHRGANILVYAPEGEERAKR
TMNSNLGIIGGISILGTTGIVTPMSDEGWKKSLSMELEMKRNQGLEQIILVPGNYGDDFVQHTLGFSSNNIVSMSNFVGY
MLKETQRLAFKKVLMVGHFGKLVKVSAGIFTTYSKDADARAEILVANLALLGAPLSLLQEVEKCNTTEAAGELIEEAGYT
HVYEVIAQKIKARSERFLKFTKPSVEIDVVTFSTERGLLATTKDIDVLREEWQ

Sequences:

>Translated_373_residues
MEDFIYYNGKKYRKGYTTGTCAAAAAKACVEMILTQEEVSAVQVTTTGGTILEIPVAHQQFSKKRATAAVQKDGGDDIDA
THGMWIFVDVELTNSTEVVLDGGVGIGRATQKGISVAVGEAAINPAPRKNILEAVRKSLGEHRGANILVYAPEGEERAKR
TMNSNLGIIGGISILGTTGIVTPMSDEGWKKSLSMELEMKRNQGLEQIILVPGNYGDDFVQHTLGFSSNNIVSMSNFVGY
MLKETQRLAFKKVLMVGHFGKLVKVSAGIFTTYSKDADARAEILVANLALLGAPLSLLQEVEKCNTTEAAGELIEEAGYT
HVYEVIAQKIKARSERFLKFTKPSVEIDVVTFSTERGLLATTKDIDVLREEWQ
>Mature_373_residues
MEDFIYYNGKKYRKGYTTGTCAAAAAKACVEMILTQEEVSAVQVTTTGGTILEIPVAHQQFSKKRATAAVQKDGGDDIDA
THGMWIFVDVELTNSTEVVLDGGVGIGRATQKGISVAVGEAAINPAPRKNILEAVRKSLGEHRGANILVYAPEGEERAKR
TMNSNLGIIGGISILGTTGIVTPMSDEGWKKSLSMELEMKRNQGLEQIILVPGNYGDDFVQHTLGFSSNNIVSMSNFVGY
MLKETQRLAFKKVLMVGHFGKLVKVSAGIFTTYSKDADARAEILVANLALLGAPLSLLQEVEKCNTTEAAGELIEEAGYT
HVYEVIAQKIKARSERFLKFTKPSVEIDVVTFSTERGLLATTKDIDVLREEWQ

Specific function: May catalyze the methylation of C-1 in cobalt-precorrin- 5 and the subsequent extrusion of acetic acid from the resulting intermediate to form cobalt-precorrin-6A [H]

COG id: COG1903

COG function: function code H; Cobalamin biosynthesis protein CbiD

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CbiD family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002748 [H]

Pfam domain/function: PF01888 CbiD [H]

EC number: NA

Molecular weight: Translated: 40531; Mature: 40531

Theoretical pI: Translated: 6.01; Mature: 6.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEDFIYYNGKKYRKGYTTGTCAAAAAKACVEMILTQEEVSAVQVTTTGGTILEIPVAHQQ
CCCEEEECCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCEEEEEECCCEEEEECCHHHH
FSKKRATAAVQKDGGDDIDATHGMWIFVDVELTNSTEVVLDGGVGIGRATQKGISVAVGE
HHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEECCCCEEEEECCCCCCCHHHCCCEEEECH
AAINPAPRKNILEAVRKSLGEHRGANILVYAPEGEERAKRTMNSNLGIIGGISILGTTGI
HHCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHCCCCCEEECHHHHCCCCC
VTPMSDEGWKKSLSMELEMKRNQGLEQIILVPGNYGDDFVQHTLGFSSNNIVSMSNFVGY
CCCCCCCCHHHHCCEEEEECCCCCCEEEEEECCCCCHHHHHHHHCCCCCCEEEHHHHHHH
MLKETQRLAFKKVLMVGHFGKLVKVSAGIFTTYSKDADARAEILVANLALLGAPLSLLQE
HHHHHHHHHHHHHHHHHCCCHHEEEECCEEEEECCCCCCHHHHHHHHHHHHCCCHHHHHH
VEKCNTTEAAGELIEEAGYTHVYEVIAQKIKARSERFLKFTKPSVEIDVVTFSTERGLLA
HHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHEEECCCCEEEEEEEEECCCCCEE
TTKDIDVLREEWQ
ECHHHHHHHHHCC
>Mature Secondary Structure
MEDFIYYNGKKYRKGYTTGTCAAAAAKACVEMILTQEEVSAVQVTTTGGTILEIPVAHQQ
CCCEEEECCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCEEEEEECCCEEEEECCHHHH
FSKKRATAAVQKDGGDDIDATHGMWIFVDVELTNSTEVVLDGGVGIGRATQKGISVAVGE
HHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEECCCCEEEEECCCCCCCHHHCCCEEEECH
AAINPAPRKNILEAVRKSLGEHRGANILVYAPEGEERAKRTMNSNLGIIGGISILGTTGI
HHCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHCCCCCEEECHHHHCCCCC
VTPMSDEGWKKSLSMELEMKRNQGLEQIILVPGNYGDDFVQHTLGFSSNNIVSMSNFVGY
CCCCCCCCHHHHCCEEEEECCCCCCEEEEEECCCCCHHHHHHHHCCCCCCEEEHHHHHHH
MLKETQRLAFKKVLMVGHFGKLVKVSAGIFTTYSKDADARAEILVANLALLGAPLSLLQE
HHHHHHHHHHHHHHHHHCCCHHEEEECCEEEEECCCCCCHHHHHHHHHHHHCCCHHHHHH
VEKCNTTEAAGELIEEAGYTHVYEVIAQKIKARSERFLKFTKPSVEIDVVTFSTERGLLA
HHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHEEECCCCEEEEEEEEECCCCCEE
TTKDIDVLREEWQ
ECHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11679669 [H]