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The map label for this gene is pdtaR [H]

Identifier: 116872546

GI number: 116872546

Start: 1143113

End: 1143685

Strand: Direct

Name: pdtaR [H]

Synonym: lwe1130

Alternate gene names: 116872546

Gene position: 1143113-1143685 (Clockwise)

Preceding gene: 116872545

Following gene: 116872547

Centisome position: 40.62

GC content: 36.13

Gene sequence:

>573_bases
ATGAATGGAAGAATTGTAATAGCCGATGATGAACCTATTACAAGAATGGATATCCGAGACATTTTGGAAGAAGCGAACTA
CGATGTTGTAGGAGAAGCGACTGATGGTTTTGAAGCAATTGAACTTTGCAAAAGCCATCAACCAGATCTTGTTATTATGG
ACATTCAAATGCCACTCTTAGACGGTTTAAAAGCAGGGAAACGAATTATTTCGGAAGGCCTTGCTGGCGGAATTATTTTA
CTAACCGCATTTAGTGATCCAAAAAACACGGAAAAAGCAAAAGGATTTGGAGCATTAGGCTATTTAGTAAAACCGCTTGA
TGAAAAAAGTTTAATTCCAACAGTTGAAATGAGTATTGCCAAAGGGCGAGAAACAAGAAAACTAGAACAACAATTAGAAA
AACTAACAAAAAAATTAGAAGAACGAAAAGTGATTGAAAAAGCTAAAGGTGTGCTTATGATTGAGAATAACATCACAGAA
GAAGAAGCTTACAATATGATTCGTAATCTGAGCATGGATAAACGTTGTCCAATGATGGAAATCGCTGAAACGATTGTGAT
GAGCGATGACTAA

Upstream 100 bases:

>100_bases
AGCTCTTTAACTCTTTCGCTCAAGTAAATGCTTCTATAGGATGAATTCGTACAACTTTGTTACGAATCAATCAATAGCAG
AAGAAGAGGACGTGACAGGA

Downstream 100 bases:

>100_bases
AACGATTCGAGAAATGTGCTTACGTTATACAGACTTGGCTGAATATGATATTGATGAATTAATACATACAGCAAAATCAT
TAAGCGAGTCTTCTATGTAT

Product: transcription antiterminator response regulator, putative

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 190; Mature: 190

Protein sequence:

>190_residues
MNGRIVIADDEPITRMDIRDILEEANYDVVGEATDGFEAIELCKSHQPDLVIMDIQMPLLDGLKAGKRIISEGLAGGIIL
LTAFSDPKNTEKAKGFGALGYLVKPLDEKSLIPTVEMSIAKGRETRKLEQQLEKLTKKLEERKVIEKAKGVLMIENNITE
EEAYNMIRNLSMDKRCPMMEIAETIVMSDD

Sequences:

>Translated_190_residues
MNGRIVIADDEPITRMDIRDILEEANYDVVGEATDGFEAIELCKSHQPDLVIMDIQMPLLDGLKAGKRIISEGLAGGIIL
LTAFSDPKNTEKAKGFGALGYLVKPLDEKSLIPTVEMSIAKGRETRKLEQQLEKLTKKLEERKVIEKAKGVLMIENNITE
EEAYNMIRNLSMDKRCPMMEIAETIVMSDD
>Mature_190_residues
MNGRIVIADDEPITRMDIRDILEEANYDVVGEATDGFEAIELCKSHQPDLVIMDIQMPLLDGLKAGKRIISEGLAGGIIL
LTAFSDPKNTEKAKGFGALGYLVKPLDEKSLIPTVEMSIAKGRETRKLEQQLEKLTKKLEERKVIEKAKGVLMIENNITE
EEAYNMIRNLSMDKRCPMMEIAETIVMSDD

Specific function: Member of the two-component regulatory system pdtaR/pdtaS [H]

COG id: COG3707

COG function: function code T; Response regulator with putative antiterminator output domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI87082052, Length=124, Percent_Identity=34.6774193548387, Blast_Score=65, Evalue=2e-12,
Organism=Escherichia coli, GI1788550, Length=132, Percent_Identity=34.0909090909091, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI1788222, Length=101, Percent_Identity=36.6336633663366, Blast_Score=65, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005561
- InterPro:   IPR011006
- InterPro:   IPR008327
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF03861 ANTAR; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 21254; Mature: 21254

Theoretical pI: Translated: 4.51; Mature: 4.51

Prosite motif: PS50921 ANTAR ; PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
5.8 %Met     (Translated Protein)
6.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
5.8 %Met     (Mature Protein)
6.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNGRIVIADDEPITRMDIRDILEEANYDVVGEATDGFEAIELCKSHQPDLVIMDIQMPLL
CCCCEEEECCCCCCHHHHHHHHHHCCCCEEECCCCCHHHHHHHHCCCCCEEEEEECCHHH
DGLKAGKRIISEGLAGGIILLTAFSDPKNTEKAKGFGALGYLVKPLDEKSLIPTVEMSIA
HHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHCCCCHHHHHHCCCCCCCCCCHHHHHHH
KGRETRKLEQQLEKLTKKLEERKVIEKAKGVLMIENNITEEEAYNMIRNLSMDKRCPMME
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHCCCCCCCCHHH
IAETIVMSDD
HHHHHHCCCC
>Mature Secondary Structure
MNGRIVIADDEPITRMDIRDILEEANYDVVGEATDGFEAIELCKSHQPDLVIMDIQMPLL
CCCCEEEECCCCCCHHHHHHHHHHCCCCEEECCCCCHHHHHHHHCCCCCEEEEEECCHHH
DGLKAGKRIISEGLAGGIILLTAFSDPKNTEKAKGFGALGYLVKPLDEKSLIPTVEMSIA
HHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHCCCCHHHHHHCCCCCCCCCCHHHHHHH
KGRETRKLEQQLEKLTKKLEERKVIEKAKGVLMIENNITEEEAYNMIRNLSMDKRCPMME
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHCCCCCCCCHHH
IAETIVMSDD
HHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]