| Definition | Listeria welshimeri serovar 6b str. SLCC5334, complete genome. |
|---|---|
| Accession | NC_008555 |
| Length | 2,814,130 |
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The map label for this gene is yddE [H]
Identifier: 116872199
GI number: 116872199
Start: 808051
End: 810573
Strand: Direct
Name: yddE [H]
Synonym: lwe0779
Alternate gene names: 116872199
Gene position: 808051-810573 (Clockwise)
Preceding gene: 116872198
Following gene: 116872200
Centisome position: 28.71
GC content: 37.93
Gene sequence:
>2523_bases ATGAGATTAAAACAACCCTTTCATAAAGTGTATCGCAATGTGCTGATTACGACAGAAAATGAGGTGTGGGCATATTTTAC GTGTCCAAGCGAGTATGTCATTGGTCAGAACAAAGAAGTACAAGAAAAACATAAACGAAAATGGAATCAGTTTCTTCAAA GTTTACGGCGTTTTGAAGATTTTGAATTATTTCTTAATCCTCATTCGTATAATCTCAATGAACGATTATCTGCATTTTCT AAAAGTTTTGATGAAGAAGCCCAAGATATGGGCGATGCCTTGATTAATCGTACCTTGTCTGAATTAGAAAGTCAGCTACG AGTGATTACAACAGAGAAATTTTACATTGGTGTGAAGCTGTCTAGTCTGTCTTCTGCGACTTCTCTTAAAGGAAAAGCAA TGGAATTGGTAGATTATTATGCAGGTAAACTCTTAGCGATTACGCAGTACCACATGACCGTTGACGAGGATTTTTTGGCA CGTTATCGCATCATTGAAGCAGAAGTTTTTCAATTAGTCGGGGCGATCAATGGTCGAAGATTAACTGAAAAAGAAGTGTT ACAAGTCTGTCGTTATCCCTATGTTCGTGGGATGGCAACCTCTTTCGATAGTGATTTTATTGAAAAAGAAGGATACTCCC TAACGGATACGATTCTTGATCCTACAGAGGAACAAGGCTTGTTAAAACTACGAAGTTTAGAAGGAACCAATTATATTGCG CTATTGCCAATTCATAAATTTGCGCCGAATTTGGCCTTTAATCATGTGGCAGAGCTAGTTCAAAGCCTGCCTTTTCCAGT AGAGTTTCGGTTGAAGGCACATTTTGAGCCCTTGAAAGGAGGTAAAGGATTAAAAGGAAAATCTTCTAGAGCATCCAAGC GCTTAAAGAATAGTGCCAAAGAAACCCTATCCATGGGTGATGCTGAAATGAAATCCAGTCGGTTTAATCGGTATGCCTTG ACAGATTTAAATAATAAAATTGATTTACGAGTTCCAGTCATTAAATGGTTGGGGCTTTTTGGTGTCTTTGGACAAACGCC AGAAGAGTGTCGTAGCCGAATTCGTACAGTACTCTCTTTGTGTCAGTCTCGTAATGTGGATGTTGTCAAAGGATTAGCAG ATCAAGTTTTTCTATTTCACCAATTCTTGTCTGGAAATAAATTAGGACCCGAAAAGAATTGGATTCATTACACCACTGTA GAAGGTATCAGCGAATTGATGCTAGGGGTAGAAAATAGAATTGGAGATAATGTAGGTATTCCCATTGGTATGGTATCAGA ATTAAAAAATACACGGAATTTAACGCCTAAAGAAATTGCGAAAACCAGTCGTAAGCCAGTATTTTTTAATCCGTCTATTG GGAATCAAAGTGATATCGCTGATAAGAAAGCAAATAGTCCGCACATTGCCATTACAGGACCTACAGGAAATGGAAAGTCC TATTTGGCTAAATTTGTGTTCTTTCTCTCTGTACTGATGAAAGGAAAAGGGCTCTATGTTGACCCAAAATCCGAATTCTT TGATTGGATCATGGAAGTGATCAATGACCCAGTGTATCAGAAAAAGTATCCTGAAACGTGTACCTTTGTTCAGCAGCACT TTCACCAAGTTAGACTTGATCCAGACAAAAAGAGTAATAAAGGCGTTCTTGATCCTATTTGTTTTATTCCAAACCGAGTT GCGGCAAAAGATATGGCACAAGATTTATTTGAAGAATTGTATAACTTTACGAGTGCGAGAGAGAAGAAATCTCGTCTAGC CATGTTAGAAGGTATCGAAGTAGTCTTGAAGAAACGAGATTATGGAGAACGAGTTGGTCTTCTTCATGTGGTTGATTACA TGTTAGAAAATGATAATGAGGAAGTCCGAGATACTGCTAATTTGATCAAAAAATCTGTTCAAGGGTCTATTTTAGAATTG GCATTTAGTTATGGCGAAAATGAGGGATTGAACCTGCATAACAAAGTGACTGTACTTGAAGTGTTAGGGCTAGAAATGCC TAGAGCAGAAACCTTAAGTAATGATTATAGTGCCACCCAAAGAAAATCCATTATGTTAATGATGTGTATTGGAAAGTTCT GTGAGTTGTTTGGTTTGCGAGATCGAGAAGAAAGCACCGTGGTACTTTTTGACGAGAGCTGGATTTTTAACACGTCAAAA AATGGGCGAGCGATTATTAAATCCATGCGCCGAGTTGGTCGAAGTTTTAACAATACCTTAATTATTGTGACACAATCTGT AAAAGACACCGCAGAAGAAGATGACACAGGGAATTTTGGACGTATTTTTGCCTATGATGATAAGGATGAACGAGAAGAGA TTCTTCGTCATTTAGGCTTAGAAGTGAGTGAGGAAAACATTGAGTGGTTAAAAAATTTACCTAAGTACCATTGTCTTTAT TTAGATTTAAGAGGGCGTGTTGGAAAAATGTTAGTCTATTGTCCTTATGAAGAATTGCATCAAATGTTGCAAACCGTGAA GAAAAATGCAAGTGCAGACGTGGAAACTGCCTTTAGTGCATAG
Upstream 100 bases:
>100_bases CCACTGACGGAGGTGCTCAAGTTGAAAGACCAATACCAACCATTAATCAAGCAATCCTTACGCAAACGGATCACTCGATT ATTATAAAAGGAGGAAAAGC
Downstream 100 bases:
>100_bases AAGGGAGTGAGCTTATTGTTAAAAGATGTCTTCGATATTGATTCTTTCCAGTCTTTCTTTGAAAAGGGTGGTTGGTTTAG TATCAATGAGAATTTACAAA
Product: ATPase domain-containing protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 840; Mature: 840
Protein sequence:
>840_residues MRLKQPFHKVYRNVLITTENEVWAYFTCPSEYVIGQNKEVQEKHKRKWNQFLQSLRRFEDFELFLNPHSYNLNERLSAFS KSFDEEAQDMGDALINRTLSELESQLRVITTEKFYIGVKLSSLSSATSLKGKAMELVDYYAGKLLAITQYHMTVDEDFLA RYRIIEAEVFQLVGAINGRRLTEKEVLQVCRYPYVRGMATSFDSDFIEKEGYSLTDTILDPTEEQGLLKLRSLEGTNYIA LLPIHKFAPNLAFNHVAELVQSLPFPVEFRLKAHFEPLKGGKGLKGKSSRASKRLKNSAKETLSMGDAEMKSSRFNRYAL TDLNNKIDLRVPVIKWLGLFGVFGQTPEECRSRIRTVLSLCQSRNVDVVKGLADQVFLFHQFLSGNKLGPEKNWIHYTTV EGISELMLGVENRIGDNVGIPIGMVSELKNTRNLTPKEIAKTSRKPVFFNPSIGNQSDIADKKANSPHIAITGPTGNGKS YLAKFVFFLSVLMKGKGLYVDPKSEFFDWIMEVINDPVYQKKYPETCTFVQQHFHQVRLDPDKKSNKGVLDPICFIPNRV AAKDMAQDLFEELYNFTSAREKKSRLAMLEGIEVVLKKRDYGERVGLLHVVDYMLENDNEEVRDTANLIKKSVQGSILEL AFSYGENEGLNLHNKVTVLEVLGLEMPRAETLSNDYSATQRKSIMLMMCIGKFCELFGLRDREESTVVLFDESWIFNTSK NGRAIIKSMRRVGRSFNNTLIIVTQSVKDTAEEDDTGNFGRIFAYDDKDEREEILRHLGLEVSEENIEWLKNLPKYHCLY LDLRGRVGKMLVYCPYEELHQMLQTVKKNASADVETAFSA
Sequences:
>Translated_840_residues MRLKQPFHKVYRNVLITTENEVWAYFTCPSEYVIGQNKEVQEKHKRKWNQFLQSLRRFEDFELFLNPHSYNLNERLSAFS KSFDEEAQDMGDALINRTLSELESQLRVITTEKFYIGVKLSSLSSATSLKGKAMELVDYYAGKLLAITQYHMTVDEDFLA RYRIIEAEVFQLVGAINGRRLTEKEVLQVCRYPYVRGMATSFDSDFIEKEGYSLTDTILDPTEEQGLLKLRSLEGTNYIA LLPIHKFAPNLAFNHVAELVQSLPFPVEFRLKAHFEPLKGGKGLKGKSSRASKRLKNSAKETLSMGDAEMKSSRFNRYAL TDLNNKIDLRVPVIKWLGLFGVFGQTPEECRSRIRTVLSLCQSRNVDVVKGLADQVFLFHQFLSGNKLGPEKNWIHYTTV EGISELMLGVENRIGDNVGIPIGMVSELKNTRNLTPKEIAKTSRKPVFFNPSIGNQSDIADKKANSPHIAITGPTGNGKS YLAKFVFFLSVLMKGKGLYVDPKSEFFDWIMEVINDPVYQKKYPETCTFVQQHFHQVRLDPDKKSNKGVLDPICFIPNRV AAKDMAQDLFEELYNFTSAREKKSRLAMLEGIEVVLKKRDYGERVGLLHVVDYMLENDNEEVRDTANLIKKSVQGSILEL AFSYGENEGLNLHNKVTVLEVLGLEMPRAETLSNDYSATQRKSIMLMMCIGKFCELFGLRDREESTVVLFDESWIFNTSK NGRAIIKSMRRVGRSFNNTLIIVTQSVKDTAEEDDTGNFGRIFAYDDKDEREEILRHLGLEVSEENIEWLKNLPKYHCLY LDLRGRVGKMLVYCPYEELHQMLQTVKKNASADVETAFSA >Mature_840_residues MRLKQPFHKVYRNVLITTENEVWAYFTCPSEYVIGQNKEVQEKHKRKWNQFLQSLRRFEDFELFLNPHSYNLNERLSAFS KSFDEEAQDMGDALINRTLSELESQLRVITTEKFYIGVKLSSLSSATSLKGKAMELVDYYAGKLLAITQYHMTVDEDFLA RYRIIEAEVFQLVGAINGRRLTEKEVLQVCRYPYVRGMATSFDSDFIEKEGYSLTDTILDPTEEQGLLKLRSLEGTNYIA LLPIHKFAPNLAFNHVAELVQSLPFPVEFRLKAHFEPLKGGKGLKGKSSRASKRLKNSAKETLSMGDAEMKSSRFNRYAL TDLNNKIDLRVPVIKWLGLFGVFGQTPEECRSRIRTVLSLCQSRNVDVVKGLADQVFLFHQFLSGNKLGPEKNWIHYTTV EGISELMLGVENRIGDNVGIPIGMVSELKNTRNLTPKEIAKTSRKPVFFNPSIGNQSDIADKKANSPHIAITGPTGNGKS YLAKFVFFLSVLMKGKGLYVDPKSEFFDWIMEVINDPVYQKKYPETCTFVQQHFHQVRLDPDKKSNKGVLDPICFIPNRV AAKDMAQDLFEELYNFTSAREKKSRLAMLEGIEVVLKKRDYGERVGLLHVVDYMLENDNEEVRDTANLIKKSVQGSILEL AFSYGENEGLNLHNKVTVLEVLGLEMPRAETLSNDYSATQRKSIMLMMCIGKFCELFGLRDREESTVVLFDESWIFNTSK NGRAIIKSMRRVGRSFNNTLIIVTQSVKDTAEEDDTGNFGRIFAYDDKDEREEILRHLGLEVSEENIEWLKNLPKYHCLY LDLRGRVGKMLVYCPYEELHQMLQTVKKNASADVETAFSA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR016628 - InterPro: IPR002789 [H]
Pfam domain/function: PF01935 DUF87 [H]
EC number: NA
Molecular weight: Translated: 96108; Mature: 96108
Theoretical pI: Translated: 7.59; Mature: 7.59
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRLKQPFHKVYRNVLITTENEVWAYFTCPSEYVIGQNKEVQEKHKRKWNQFLQSLRRFED CCCCCHHHHHHHCEEEEECCCEEEEEECCCHHCCCCCCHHHHHHHHHHHHHHHHHHCCCC FELFLNPHSYNLNERLSAFSKSFDEEAQDMGDALINRTLSELESQLRVITTEKFYIGVKL EEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEEE SSLSSATSLKGKAMELVDYYAGKLLAITQYHMTVDEDFLARYRIIEAEVFQLVGAINGRR CCCCCHHHCCCHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCC LTEKEVLQVCRYPYVRGMATSFDSDFIEKEGYSLTDTILDPTEEQGLLKLRSLEGTNYIA CCHHHHHHHHCCHHHHCHHHHCCHHHHHHCCCEEHHHHCCCCCCCCCEEEEECCCCCEEE LLPIHKFAPNLAFNHVAELVQSLPFPVEFRLKAHFEPLKGGKGLKGKSSRASKRLKNSAK EEEHHHHCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHH ETLSMGDAEMKSSRFNRYALTDLNNKIDLRVPVIKWLGLFGVFGQTPEECRSRIRTVLSL HHHHCCCHHHHHHCCCCEEEECCCCCEEEEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHH CQSRNVDVVKGLADQVFLFHQFLSGNKLGPEKNWIHYTTVEGISELMLGVENRIGDNVGI HHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHCCCCCCC PIGMVSELKNTRNLTPKEIAKTSRKPVFFNPSIGNQSDIADKKANSPHIAITGPTGNGKS CHHHHHHHHHHCCCCHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCHH YLAKFVFFLSVLMKGKGLYVDPKSEFFDWIMEVINDPVYQKKYPETCTFVQQHFHQVRLD HHHHHHHHHHHHHCCCCEEECCHHHHHHHHHHHHCCCHHHCCCCHHHHHHHHHHHHCCCC PDKKSNKGVLDPICFIPNRVAAKDMAQDLFEELYNFTSAREKKSRLAMLEGIEVVLKKRD CCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC YGERVGLLHVVDYMLENDNEEVRDTANLIKKSVQGSILELAFSYGENEGLNLHNKVTVLE CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCHHHHHHH VLGLEMPRAETLSNDYSATQRKSIMLMMCIGKFCELFGLRDREESTVVLFDESWIFNTSK HHCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCEEEECCC NGRAIIKSMRRVGRSFNNTLIIVTQSVKDTAEEDDTGNFGRIFAYDDKDEREEILRHLGL CCHHHHHHHHHHHHCCCCEEEEEECCCHHCCCCCCCCCCCEEEEECCCHHHHHHHHHCCC EVSEENIEWLKNLPKYHCLYLDLRGRVGKMLVYCPYEELHQMLQTVKKNASADVETAFSA CCCHHHHHHHHCCCCCEEEEEEECCCCCCEEEECCHHHHHHHHHHHHHCCCCCCHHHCCC >Mature Secondary Structure MRLKQPFHKVYRNVLITTENEVWAYFTCPSEYVIGQNKEVQEKHKRKWNQFLQSLRRFED CCCCCHHHHHHHCEEEEECCCEEEEEECCCHHCCCCCCHHHHHHHHHHHHHHHHHHCCCC FELFLNPHSYNLNERLSAFSKSFDEEAQDMGDALINRTLSELESQLRVITTEKFYIGVKL EEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEEE SSLSSATSLKGKAMELVDYYAGKLLAITQYHMTVDEDFLARYRIIEAEVFQLVGAINGRR CCCCCHHHCCCHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCC LTEKEVLQVCRYPYVRGMATSFDSDFIEKEGYSLTDTILDPTEEQGLLKLRSLEGTNYIA CCHHHHHHHHCCHHHHCHHHHCCHHHHHHCCCEEHHHHCCCCCCCCCEEEEECCCCCEEE LLPIHKFAPNLAFNHVAELVQSLPFPVEFRLKAHFEPLKGGKGLKGKSSRASKRLKNSAK EEEHHHHCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHH ETLSMGDAEMKSSRFNRYALTDLNNKIDLRVPVIKWLGLFGVFGQTPEECRSRIRTVLSL HHHHCCCHHHHHHCCCCEEEECCCCCEEEEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHH CQSRNVDVVKGLADQVFLFHQFLSGNKLGPEKNWIHYTTVEGISELMLGVENRIGDNVGI HHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHCCCCCCC PIGMVSELKNTRNLTPKEIAKTSRKPVFFNPSIGNQSDIADKKANSPHIAITGPTGNGKS CHHHHHHHHHHCCCCHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCHH YLAKFVFFLSVLMKGKGLYVDPKSEFFDWIMEVINDPVYQKKYPETCTFVQQHFHQVRLD HHHHHHHHHHHHHCCCCEEECCHHHHHHHHHHHHCCCHHHCCCCHHHHHHHHHHHHCCCC PDKKSNKGVLDPICFIPNRVAAKDMAQDLFEELYNFTSAREKKSRLAMLEGIEVVLKKRD CCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC YGERVGLLHVVDYMLENDNEEVRDTANLIKKSVQGSILELAFSYGENEGLNLHNKVTVLE CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCHHHHHHH VLGLEMPRAETLSNDYSATQRKSIMLMMCIGKFCELFGLRDREESTVVLFDESWIFNTSK HHCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCEEEECCC NGRAIIKSMRRVGRSFNNTLIIVTQSVKDTAEEDDTGNFGRIFAYDDKDEREEILRHLGL CCHHHHHHHHHHHHCCCCEEEEEECCCHHCCCCCCCCCCCEEEEECCCHHHHHHHHHCCC EVSEENIEWLKNLPKYHCLYLDLRGRVGKMLVYCPYEELHQMLQTVKKNASADVETAFSA CCCHHHHHHHHCCCCCEEEEEEECCCCCCEEEECCHHHHHHHHHHHHHCCCCCCHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]