Definition Listeria welshimeri serovar 6b str. SLCC5334, complete genome.
Accession NC_008555
Length 2,814,130

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The map label for this gene is yfnA [H]

Identifier: 116872032

GI number: 116872032

Start: 650139

End: 651530

Strand: Direct

Name: yfnA [H]

Synonym: lwe0612

Alternate gene names: 116872032

Gene position: 650139-651530 (Clockwise)

Preceding gene: 116872030

Following gene: 116872033

Centisome position: 23.1

GC content: 36.71

Gene sequence:

>1392_bases
ATGAATTCATTATTTAGAAGAAAACCAATAGAAGATTTAATGCACAATAAAAGCGGGAGTACACATCTAAAACAAACACT
AGGACCGCTAGATTTAACTTTGCTAGGTGTTGGAGCAATTGTTGGGACTGGGATTTTTATTTTACCGGGAACAGTAGCTG
CGAATAATGCGGGACCAGCAATTATTTTTTCTTTTGTGATTGCAGCGATTGTATGTGCGATTGCAGCCATGTGTTATTCA
GAGTTTGCATCTAGTGTTCCAGTTGCTGGGAGCGCCTATACGTATGGCTATGTTGTTTTTGGTGAGTTAATCGGCTGGTT
GCTTGGTTGGGCTCTTATTTTGGAATATGGGCTTGCTGTGGCTTCTGTAGCAAGTGGGTGGTCTTCTTATTTAAATGCGC
TACTTTCTGGATTTCATATTTCTATTCCGGAAGCAGTATCTGGTCCTTTTAATCCTGAGGCGGGTACATTTATTAATTTA
CCAGCTATAATTATCGTCCTTGTAATTGCATTTTTATTAACACTTGGAATAAAAGAGTCTACTCGTGTGAATACAATTAT
GGTTGCTATCAAAGTTGGGGTTATTTTACTTTTCTTAGTCGTTGGGGTATTTTATGTTAAACCGGATAATTGGCAACCGT
TTATGCCATTTGGAATTAGTGGTGTGATGAATGGTGCGGCATTAGTGTTTTTTGCTTATTTAGGTTTTGATGCAGTTTCG
TCAGCGGCAGAAGAAGTGAAAAATCCACAACGAACGATGCCAATTGGAATAATAGGATCACTACTTATTTGCACTGTATT
ATATGTAGCGGTTTCGGCTGTTTTAACTGGAATGGTACCATATACTGATTTAAATGTAACTGATCCGGTAGCCTATGCTT
TACAAGTTATTAACCAAGACTGGGTGGCAGGGATTGTATCGCTTGGTGCCGTAGTTGGAATGATTACAGTGATTTTAGTA
ATGAGTTACGGTGCTACAAGACTAATTTTTGCAATGGGACGTGATGGTTTATTACCAAAAGTACTTGCAGAAATCAACCA
AAAATATCAAACACCGGTCAAAAATACTTGGATTTTCGCTGTTATAGTCGCAATTATTAGTGGTCTAGTTCCACTTGATA
GATTAGCTGAATTAGTTAATATTGGGACTCTGTTGGCATTTATGATGGTTTCAATCGGGATTATTTTCTTACGTAAAAAT
AAAGCGATTCAAAAATCAGGTTTCAAAGTGCCATTTTATCCCGTTTTACCGATAGTATCATTTCTATTATGTGCATTTCT
AATTAGTCGTTTATCTGTTCATACATGGATTCTTTGTGGAATTTGGTTTGTAATAGGCTTAATTGTGTATTTCACTTATG
GTAGAAATCACAGTGAATTGCTTAAAAAATAA

Upstream 100 bases:

>100_bases
GAAGGAATGATTAGTTTCTGTATTTTTTTTCACAATTCTATTGACCTTTAAAGTGTAAAAGGATACTATTTGAGAAGATT
ATAAAAAGGTAGGAGAAAAA

Downstream 100 bases:

>100_bases
CTAACTTACTTTTTGTAAGTCTTATCATTGGAATTTGAAGGCTCCTTATGTTGTAATGAATATATGATACTAAAAGGAGC
GTTTATACCATGGTAAAAAT

Product: amino acid permease family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 463; Mature: 463

Protein sequence:

>463_residues
MNSLFRRKPIEDLMHNKSGSTHLKQTLGPLDLTLLGVGAIVGTGIFILPGTVAANNAGPAIIFSFVIAAIVCAIAAMCYS
EFASSVPVAGSAYTYGYVVFGELIGWLLGWALILEYGLAVASVASGWSSYLNALLSGFHISIPEAVSGPFNPEAGTFINL
PAIIIVLVIAFLLTLGIKESTRVNTIMVAIKVGVILLFLVVGVFYVKPDNWQPFMPFGISGVMNGAALVFFAYLGFDAVS
SAAEEVKNPQRTMPIGIIGSLLICTVLYVAVSAVLTGMVPYTDLNVTDPVAYALQVINQDWVAGIVSLGAVVGMITVILV
MSYGATRLIFAMGRDGLLPKVLAEINQKYQTPVKNTWIFAVIVAIISGLVPLDRLAELVNIGTLLAFMMVSIGIIFLRKN
KAIQKSGFKVPFYPVLPIVSFLLCAFLISRLSVHTWILCGIWFVIGLIVYFTYGRNHSELLKK

Sequences:

>Translated_463_residues
MNSLFRRKPIEDLMHNKSGSTHLKQTLGPLDLTLLGVGAIVGTGIFILPGTVAANNAGPAIIFSFVIAAIVCAIAAMCYS
EFASSVPVAGSAYTYGYVVFGELIGWLLGWALILEYGLAVASVASGWSSYLNALLSGFHISIPEAVSGPFNPEAGTFINL
PAIIIVLVIAFLLTLGIKESTRVNTIMVAIKVGVILLFLVVGVFYVKPDNWQPFMPFGISGVMNGAALVFFAYLGFDAVS
SAAEEVKNPQRTMPIGIIGSLLICTVLYVAVSAVLTGMVPYTDLNVTDPVAYALQVINQDWVAGIVSLGAVVGMITVILV
MSYGATRLIFAMGRDGLLPKVLAEINQKYQTPVKNTWIFAVIVAIISGLVPLDRLAELVNIGTLLAFMMVSIGIIFLRKN
KAIQKSGFKVPFYPVLPIVSFLLCAFLISRLSVHTWILCGIWFVIGLIVYFTYGRNHSELLKK
>Mature_463_residues
MNSLFRRKPIEDLMHNKSGSTHLKQTLGPLDLTLLGVGAIVGTGIFILPGTVAANNAGPAIIFSFVIAAIVCAIAAMCYS
EFASSVPVAGSAYTYGYVVFGELIGWLLGWALILEYGLAVASVASGWSSYLNALLSGFHISIPEAVSGPFNPEAGTFINL
PAIIIVLVIAFLLTLGIKESTRVNTIMVAIKVGVILLFLVVGVFYVKPDNWQPFMPFGISGVMNGAALVFFAYLGFDAVS
SAAEEVKNPQRTMPIGIIGSLLICTVLYVAVSAVLTGMVPYTDLNVTDPVAYALQVINQDWVAGIVSLGAVVGMITVILV
MSYGATRLIFAMGRDGLLPKVLAEINQKYQTPVKNTWIFAVIVAIISGLVPLDRLAELVNIGTLLAFMMVSIGIIFLRKN
KAIQKSGFKVPFYPVLPIVSFLLCAFLISRLSVHTWILCGIWFVIGLIVYFTYGRNHSELLKK

Specific function: Probable Amino-Acid Or Metabolite Transport Protein. [C]

COG id: COG0531

COG function: function code E; Amino acid transporters

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the amino acid-polyamine-organocation (APC) superfamily [H]

Homologues:

Organism=Homo sapiens, GI4507047, Length=431, Percent_Identity=37.122969837587, Blast_Score=252, Evalue=4e-67,
Organism=Homo sapiens, GI110347453, Length=405, Percent_Identity=38.5185185185185, Blast_Score=248, Evalue=9e-66,
Organism=Homo sapiens, GI258614005, Length=429, Percent_Identity=35.6643356643357, Blast_Score=246, Evalue=3e-65,
Organism=Homo sapiens, GI258614003, Length=429, Percent_Identity=35.6643356643357, Blast_Score=246, Evalue=3e-65,
Organism=Homo sapiens, GI258645169, Length=429, Percent_Identity=35.6643356643357, Blast_Score=245, Evalue=7e-65,
Organism=Homo sapiens, GI181337167, Length=418, Percent_Identity=35.6459330143541, Blast_Score=239, Evalue=4e-63,
Organism=Homo sapiens, GI114326544, Length=441, Percent_Identity=36.0544217687075, Blast_Score=237, Evalue=2e-62,
Organism=Homo sapiens, GI114326550, Length=441, Percent_Identity=36.0544217687075, Blast_Score=237, Evalue=2e-62,
Organism=Homo sapiens, GI187423910, Length=466, Percent_Identity=24.6781115879828, Blast_Score=105, Evalue=1e-22,
Organism=Homo sapiens, GI7657591, Length=466, Percent_Identity=24.6781115879828, Blast_Score=105, Evalue=1e-22,
Organism=Homo sapiens, GI33286428, Length=458, Percent_Identity=27.9475982532751, Blast_Score=96, Evalue=7e-20,
Organism=Homo sapiens, GI115648063, Length=432, Percent_Identity=24.7685185185185, Blast_Score=95, Evalue=1e-19,
Organism=Homo sapiens, GI115648022, Length=432, Percent_Identity=24.7685185185185, Blast_Score=95, Evalue=1e-19,
Organism=Homo sapiens, GI71979932, Length=442, Percent_Identity=26.4705882352941, Blast_Score=95, Evalue=2e-19,
Organism=Homo sapiens, GI186910308, Length=449, Percent_Identity=25.6124721603563, Blast_Score=89, Evalue=8e-18,
Organism=Homo sapiens, GI186910306, Length=449, Percent_Identity=25.6124721603563, Blast_Score=89, Evalue=8e-18,
Organism=Homo sapiens, GI186910304, Length=449, Percent_Identity=25.6124721603563, Blast_Score=89, Evalue=8e-18,
Organism=Homo sapiens, GI7657683, Length=404, Percent_Identity=24.5049504950495, Blast_Score=83, Evalue=4e-16,
Organism=Homo sapiens, GI9790235, Length=305, Percent_Identity=23.2786885245902, Blast_Score=72, Evalue=1e-12,
Organism=Escherichia coli, GI87081869, Length=445, Percent_Identity=24.7191011235955, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI87082023, Length=465, Percent_Identity=26.4516129032258, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI1786302, Length=424, Percent_Identity=22.877358490566, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI2367353, Length=463, Percent_Identity=23.7580993520518, Blast_Score=90, Evalue=3e-19,
Organism=Escherichia coli, GI87082250, Length=354, Percent_Identity=27.683615819209, Blast_Score=89, Evalue=7e-19,
Organism=Escherichia coli, GI1788480, Length=441, Percent_Identity=21.7687074829932, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI87081708, Length=444, Percent_Identity=20.2702702702703, Blast_Score=85, Evalue=8e-18,
Organism=Escherichia coli, GI1786789, Length=478, Percent_Identity=23.0125523012552, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1786694, Length=399, Percent_Identity=23.8095238095238, Blast_Score=72, Evalue=6e-14,
Organism=Escherichia coli, GI1789017, Length=358, Percent_Identity=21.7877094972067, Blast_Score=69, Evalue=8e-13,
Organism=Escherichia coli, GI1786908, Length=361, Percent_Identity=23.5457063711911, Blast_Score=68, Evalue=1e-12,
Organism=Escherichia coli, GI1790653, Length=493, Percent_Identity=21.7038539553753, Blast_Score=62, Evalue=7e-11,
Organism=Caenorhabditis elegans, GI17532491, Length=414, Percent_Identity=37.43961352657, Blast_Score=272, Evalue=3e-73,
Organism=Caenorhabditis elegans, GI17531343, Length=408, Percent_Identity=36.7647058823529, Blast_Score=251, Evalue=7e-67,
Organism=Caenorhabditis elegans, GI17533459, Length=412, Percent_Identity=36.4077669902913, Blast_Score=240, Evalue=1e-63,
Organism=Caenorhabditis elegans, GI17568033, Length=439, Percent_Identity=23.0068337129841, Blast_Score=93, Evalue=3e-19,
Organism=Caenorhabditis elegans, GI32566695, Length=416, Percent_Identity=22.5961538461538, Blast_Score=87, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI193208714, Length=416, Percent_Identity=22.5961538461538, Blast_Score=87, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI17537453, Length=354, Percent_Identity=24.5762711864407, Blast_Score=84, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI71982612, Length=408, Percent_Identity=21.3235294117647, Blast_Score=82, Evalue=8e-16,
Organism=Caenorhabditis elegans, GI71982608, Length=408, Percent_Identity=20.8333333333333, Blast_Score=82, Evalue=9e-16,
Organism=Caenorhabditis elegans, GI32566699, Length=319, Percent_Identity=25.3918495297806, Blast_Score=81, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17540018, Length=428, Percent_Identity=25, Blast_Score=75, Evalue=9e-14,
Organism=Caenorhabditis elegans, GI71993915, Length=397, Percent_Identity=22.4181360201511, Blast_Score=74, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI71995382, Length=395, Percent_Identity=24.3037974683544, Blast_Score=73, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI71995388, Length=395, Percent_Identity=24.3037974683544, Blast_Score=73, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI71990446, Length=437, Percent_Identity=22.1967963386728, Blast_Score=66, Evalue=4e-11,
Organism=Drosophila melanogaster, GI221512776, Length=409, Percent_Identity=38.3863080684597, Blast_Score=295, Evalue=5e-80,
Organism=Drosophila melanogaster, GI24666159, Length=409, Percent_Identity=38.3863080684597, Blast_Score=294, Evalue=7e-80,
Organism=Drosophila melanogaster, GI24668806, Length=416, Percent_Identity=37.5, Blast_Score=273, Evalue=1e-73,
Organism=Drosophila melanogaster, GI21356285, Length=416, Percent_Identity=37.5, Blast_Score=273, Evalue=1e-73,
Organism=Drosophila melanogaster, GI24668802, Length=416, Percent_Identity=37.5, Blast_Score=273, Evalue=1e-73,
Organism=Drosophila melanogaster, GI24667468, Length=384, Percent_Identity=37.2395833333333, Blast_Score=268, Evalue=7e-72,
Organism=Drosophila melanogaster, GI281366235, Length=412, Percent_Identity=35.1941747572816, Blast_Score=229, Evalue=2e-60,
Organism=Drosophila melanogaster, GI116007820, Length=412, Percent_Identity=35.1941747572816, Blast_Score=229, Evalue=2e-60,
Organism=Drosophila melanogaster, GI116007818, Length=412, Percent_Identity=35.1941747572816, Blast_Score=225, Evalue=5e-59,
Organism=Drosophila melanogaster, GI85725152, Length=412, Percent_Identity=35.1941747572816, Blast_Score=225, Evalue=5e-59,
Organism=Drosophila melanogaster, GI161077963, Length=406, Percent_Identity=33.743842364532, Blast_Score=214, Evalue=1e-55,
Organism=Drosophila melanogaster, GI21357367, Length=446, Percent_Identity=22.6457399103139, Blast_Score=96, Evalue=4e-20,
Organism=Drosophila melanogaster, GI221331183, Length=454, Percent_Identity=24.8898678414097, Blast_Score=96, Evalue=6e-20,
Organism=Drosophila melanogaster, GI17647653, Length=454, Percent_Identity=24.8898678414097, Blast_Score=96, Evalue=6e-20,
Organism=Drosophila melanogaster, GI24664379, Length=454, Percent_Identity=24.8898678414097, Blast_Score=96, Evalue=6e-20,
Organism=Drosophila melanogaster, GI45550968, Length=431, Percent_Identity=23.8979118329466, Blast_Score=81, Evalue=2e-15,
Organism=Drosophila melanogaster, GI19921172, Length=431, Percent_Identity=23.8979118329466, Blast_Score=81, Evalue=2e-15,
Organism=Drosophila melanogaster, GI24651635, Length=417, Percent_Identity=23.2613908872902, Blast_Score=75, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24651633, Length=417, Percent_Identity=23.2613908872902, Blast_Score=75, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004841
- InterPro:   IPR002293
- InterPro:   IPR015606 [H]

Pfam domain/function: PF00324 AA_permease [H]

EC number: NA

Molecular weight: Translated: 49739; Mature: 49739

Theoretical pI: Translated: 8.83; Mature: 8.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure: 

>Translated Secondary Structure
MNSLFRRKPIEDLMHNKSGSTHLKQTLGPLDLTLLGVGAIVGTGIFILPGTVAANNAGPA
CCCCHHCCCHHHHHCCCCCCHHHHHHCCCHHHHHHHHHHHHHCCHHEECCCCCCCCCCHH
IIFSFVIAAIVCAIAAMCYSEFASSVPVAGSAYTYGYVVFGELIGWLLGWALILEYGLAV
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ASVASGWSSYLNALLSGFHISIPEAVSGPFNPEAGTFINLPAIIIVLVIAFLLTLGIKES
HHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCCEECHHHHHHHHHHHHHHHHCCCCC
TRVNTIMVAIKVGVILLFLVVGVFYVKPDNWQPFMPFGISGVMNGAALVFFAYLGFDAVS
CHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
SAAEEVKNPQRTMPIGIIGSLLICTVLYVAVSAVLTGMVPYTDLNVTDPVAYALQVINQD
HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
WVAGIVSLGAVVGMITVILVMSYGATRLIFAMGRDGLLPKVLAEINQKYQTPVKNTWIFA
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCHHHHHH
VIVAIISGLVPLDRLAELVNIGTLLAFMMVSIGIIFLRKNKAIQKSGFKVPFYPVLPIVS
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEECCCHHHHCCCCCCCHHHHHHHH
FLLCAFLISRLSVHTWILCGIWFVIGLIVYFTYGRNHSELLKK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCC
>Mature Secondary Structure
MNSLFRRKPIEDLMHNKSGSTHLKQTLGPLDLTLLGVGAIVGTGIFILPGTVAANNAGPA
CCCCHHCCCHHHHHCCCCCCHHHHHHCCCHHHHHHHHHHHHHCCHHEECCCCCCCCCCHH
IIFSFVIAAIVCAIAAMCYSEFASSVPVAGSAYTYGYVVFGELIGWLLGWALILEYGLAV
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ASVASGWSSYLNALLSGFHISIPEAVSGPFNPEAGTFINLPAIIIVLVIAFLLTLGIKES
HHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCCEECHHHHHHHHHHHHHHHHCCCCC
TRVNTIMVAIKVGVILLFLVVGVFYVKPDNWQPFMPFGISGVMNGAALVFFAYLGFDAVS
CHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
SAAEEVKNPQRTMPIGIIGSLLICTVLYVAVSAVLTGMVPYTDLNVTDPVAYALQVINQD
HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
WVAGIVSLGAVVGMITVILVMSYGATRLIFAMGRDGLLPKVLAEINQKYQTPVKNTWIFA
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCHHHHHH
VIVAIISGLVPLDRLAELVNIGTLLAFMMVSIGIIFLRKNKAIQKSGFKVPFYPVLPIVS
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEECCCHHHHCCCCCCCHHHHHHHH
FLLCAFLISRLSVHTWILCGIWFVIGLIVYFTYGRNHSELLKK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9141694; 9384377 [H]