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The map label for this gene is ywcJ [H]

Identifier: 116871980

GI number: 116871980

Start: 599490

End: 600290

Strand: Direct

Name: ywcJ [H]

Synonym: lwe0560

Alternate gene names: 116871980

Gene position: 599490-600290 (Clockwise)

Preceding gene: 116871979

Following gene: 116871983

Centisome position: 21.3

GC content: 36.45

Gene sequence:

>801_bases
TTGGATGTTGAAAATAGTCCATTAATGCAGAAAATTGATTATAGTACGCGCAAAAAAATTGATTTAGTAAATAATAGTGT
TCTTCGTTATATTGTGCGCGCAATGTTAGCATGTTTATTCTTAACGCTAGGGACTGCGGTCGCTGTGATGATTGGTGATA
AAGTGGATCATTTCGCACCAGGCCTTGGTAAAATCACTTATGCATTTATGTTTAGTTGGTCGCTCGTAATGATTATTTAT
ATGAATGCTGAGCTTGGAACTTCGAACATGATGTATATGACAACTGGTGTCTACCAAAAAATTGTTAAACCTGGAAAAGC
ATTACAAATTTTAATGCTTTGTGTTGTTTGTAATTTATTTGGAGGAATTCTTGCAGGGTATTTAGTTTCCCTTACTTCTG
TTTTCCATAATCTGCCAGCTGATCATTTCTTGTTTACGGCAGTTAGCGGTAAATTAGAAAAAGAACCATTACAAATTTTT
GTAGAAGGTATTTTCGCCAATATTGTTGTAAATACCGCTGTGCTTTGTACGCTCCGAATGAAAGATGACGCTGGTAAAGT
CATTGCGATGATTTTTATTATTTTCATCTTTGCATTCTTAGGATTTGAGCACGTTATCGCCAACTTTTCTTCATTCTCAT
TAGCATTTTTCGCTTCTGGCGGAACACTTGCTGCCATGACGGTTGGAAATGTAACTGTCAATTTAGTACTTGCTTTACTT
GGGAATTTTGTAGGTGGTGGCCTTGTCATCGGACTCGGCTATGCTTGGCTTAATCGAACGAAATCAATCTATAAAGACTA
A

Upstream 100 bases:

>100_bases
TTTTTATTTTCTGAAAACTATTTGCATCAAATTAAAAACATGCTACAATAAACAAGTTGTGAATTTCACAAGAAAATTTT
TTGTCTGGAGATGAAATAAT

Downstream 100 bases:

>100_bases
TAAAAAAGTTACCTCGGATATTTTCGAGGTAACTTTTTTTATATGCTTTTAACTGGCAAATTACTTAAAAATGAACGAAT
AAGCGGTTCGAATTTCGGTA

Product: formate/nitrite transporter family protein

Products: Proton [Cytoplasm]; nitrite [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 266; Mature: 266

Protein sequence:

>266_residues
MDVENSPLMQKIDYSTRKKIDLVNNSVLRYIVRAMLACLFLTLGTAVAVMIGDKVDHFAPGLGKITYAFMFSWSLVMIIY
MNAELGTSNMMYMTTGVYQKIVKPGKALQILMLCVVCNLFGGILAGYLVSLTSVFHNLPADHFLFTAVSGKLEKEPLQIF
VEGIFANIVVNTAVLCTLRMKDDAGKVIAMIFIIFIFAFLGFEHVIANFSSFSLAFFASGGTLAAMTVGNVTVNLVLALL
GNFVGGGLVIGLGYAWLNRTKSIYKD

Sequences:

>Translated_266_residues
MDVENSPLMQKIDYSTRKKIDLVNNSVLRYIVRAMLACLFLTLGTAVAVMIGDKVDHFAPGLGKITYAFMFSWSLVMIIY
MNAELGTSNMMYMTTGVYQKIVKPGKALQILMLCVVCNLFGGILAGYLVSLTSVFHNLPADHFLFTAVSGKLEKEPLQIF
VEGIFANIVVNTAVLCTLRMKDDAGKVIAMIFIIFIFAFLGFEHVIANFSSFSLAFFASGGTLAAMTVGNVTVNLVLALL
GNFVGGGLVIGLGYAWLNRTKSIYKD
>Mature_266_residues
MDVENSPLMQKIDYSTRKKIDLVNNSVLRYIVRAMLACLFLTLGTAVAVMIGDKVDHFAPGLGKITYAFMFSWSLVMIIY
MNAELGTSNMMYMTTGVYQKIVKPGKALQILMLCVVCNLFGGILAGYLVSLTSVFHNLPADHFLFTAVSGKLEKEPLQIF
VEGIFANIVVNTAVLCTLRMKDDAGKVIAMIFIIFIFAFLGFEHVIANFSSFSLAFFASGGTLAAMTVGNVTVNLVLALL
GNFVGGGLVIGLGYAWLNRTKSIYKD

Specific function: Potential Nitrite Transporter. [C]

COG id: COG2116

COG function: function code P; Formate/nitrite family of transporters

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the FNT transporter (TC 2.A.44) family [H]

Homologues:

Organism=Escherichia coli, GI87082249, Length=255, Percent_Identity=27.4509803921569, Blast_Score=78, Evalue=7e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000292 [H]

Pfam domain/function: PF01226 Form_Nir_trans [H]

EC number: NA

Molecular weight: Translated: 29052; Mature: 29052

Theoretical pI: Translated: 8.84; Mature: 8.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
5.3 %Met     (Translated Protein)
6.8 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
5.3 %Met     (Mature Protein)
6.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDVENSPLMQKIDYSTRKKIDLVNNSVLRYIVRAMLACLFLTLGTAVAVMIGDKVDHFAP
CCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCC
GLGKITYAFMFSWSLVMIIYMNAELGTSNMMYMTTGVYQKIVKPGKALQILMLCVVCNLF
CHHHHHHHHHHHHHHHHHHEECCCCCCCCEEEHHHHHHHHHHCCCHHHHHHHHHHHHHHH
GGILAGYLVSLTSVFHNLPADHFLFTAVSGKLEKEPLQIFVEGIFANIVVNTAVLCTLRM
HHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHEEEEE
KDDAGKVIAMIFIIFIFAFLGFEHVIANFSSFSLAFFASGGTLAAMTVGNVTVNLVLALL
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHEEEEEECCCEEEEEEECHHHHHHHHHHH
GNFVGGGLVIGLGYAWLNRTKSIYKD
HHHHCCHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MDVENSPLMQKIDYSTRKKIDLVNNSVLRYIVRAMLACLFLTLGTAVAVMIGDKVDHFAP
CCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCC
GLGKITYAFMFSWSLVMIIYMNAELGTSNMMYMTTGVYQKIVKPGKALQILMLCVVCNLF
CHHHHHHHHHHHHHHHHHHEECCCCCCCCEEEHHHHHHHHHHCCCHHHHHHHHHHHHHHH
GGILAGYLVSLTSVFHNLPADHFLFTAVSGKLEKEPLQIFVEGIFANIVVNTAVLCTLRM
HHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHEEEEE
KDDAGKVIAMIFIIFIFAFLGFEHVIANFSSFSLAFFASGGTLAAMTVGNVTVNLVLALL
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHEEEEEECCCEEEEEEECHHHHHHHHHHH
GNFVGGGLVIGLGYAWLNRTKSIYKD
HHHHCCHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Proton [Periplasm]; nitrite [Periplasm] [C]

Specific reaction: Proton [Periplasm] + nitrite [Periplasm] = Proton [Cytoplasm] + nitrite [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 2163394; 7934828; 9384377 [H]