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The map label for this gene is rhaD

Identifier: 116871767

GI number: 116871767

Start: 367868

End: 368704

Strand: Direct

Name: rhaD

Synonym: lwe0347

Alternate gene names: 116871767

Gene position: 367868-368704 (Clockwise)

Preceding gene: 116871766

Following gene: 116871768

Centisome position: 13.07

GC content: 38.59

Gene sequence:

>837_bases
ATGTATAGTATTTATGAAGCTCCATTTATGAAAGAAATGTGTGAGATGACGCAAAATTTATGGCGTAATGGCTGGGCAGA
AAAAAATGGTGGAAATATTAGTCAACTTTTAGAAGCCTCTGAAATCAAACATTATTTAGATACAGATCGTTACTTGTGGA
CAGAACCACTCGGATTTGATGCGTCACCACTTGCTGGAAATGTCTTTTTAGTATCTGGTTCTGGAAAATATTTTAAGAAT
GTCCAAAAAAATCCTGCTGATAACCTTTGTATTATAAAAGTGAGCAGTGACGGTGCGTCTTATCATTTATTATGGGGACT
GGAAAATGGTGGTAGACCAACAAGTGAATTAGCGTCCCATTTGAAATGCCACATTGTGAGGTTATCACAAGATCCAGATC
ATCGCGTAATTTTACATACGCATGCAACAGCAGTTTCAGCAATGACTTTTGTTCATGATTTAGATGAAGCTAAATTCACA
AGAACTTTATGGCAAATGATTACAGAATGTTTAGTAGTCTTTCCGGATGGGGTAGCAGTTGTTCCTTGGATGGTTGCTGG
AACAAATGAATTAGGTGAAGCAAGTGCTGCCAAAATGAATGATTCACGTATTGTAGTTTGGGCGCATCACGGGATTATGG
GTGCTGGGACAACAATGGATGATGCTTTTGGGTTAGTAGAAACTGTCGAAAAAGCAGCCAAAATTTATATGCAAATTGCT
CATTTCCCAACTGGAATTAAACAAGCGATTACAGATGAAGAACTTGTGGCACTAGCAGAGCGATTCAATGTAGTGCCAAA
AGCAGGTATTTTGAAAGAAGCGGGGGGCGTAAAATGA

Upstream 100 bases:

>100_bases
GCTTGAAGCTCTTTGGCAAGAAAGTAGCCCTCAAAAAATGGCGGAATTATTAATCGATTTGAAACTTACCCCAATCCAAA
ACTAAGAAAGGAAGAGGAAA

Downstream 100 bases:

>100_bases
AGAAAATCAAAGTTATTTCCGTATGTGGTTCAGGAACAGTGACTAGTTCGATGATTGCTGGGAAAGTAAAAGATGTTTTA
GCAGATAATGGATTTCGCGC

Product: rhamnulose-1-phosphate aldolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 278; Mature: 278

Protein sequence:

>278_residues
MYSIYEAPFMKEMCEMTQNLWRNGWAEKNGGNISQLLEASEIKHYLDTDRYLWTEPLGFDASPLAGNVFLVSGSGKYFKN
VQKNPADNLCIIKVSSDGASYHLLWGLENGGRPTSELASHLKCHIVRLSQDPDHRVILHTHATAVSAMTFVHDLDEAKFT
RTLWQMITECLVVFPDGVAVVPWMVAGTNELGEASAAKMNDSRIVVWAHHGIMGAGTTMDDAFGLVETVEKAAKIYMQIA
HFPTGIKQAITDEELVALAERFNVVPKAGILKEAGGVK

Sequences:

>Translated_278_residues
MYSIYEAPFMKEMCEMTQNLWRNGWAEKNGGNISQLLEASEIKHYLDTDRYLWTEPLGFDASPLAGNVFLVSGSGKYFKN
VQKNPADNLCIIKVSSDGASYHLLWGLENGGRPTSELASHLKCHIVRLSQDPDHRVILHTHATAVSAMTFVHDLDEAKFT
RTLWQMITECLVVFPDGVAVVPWMVAGTNELGEASAAKMNDSRIVVWAHHGIMGAGTTMDDAFGLVETVEKAAKIYMQIA
HFPTGIKQAITDEELVALAERFNVVPKAGILKEAGGVK
>Mature_278_residues
MYSIYEAPFMKEMCEMTQNLWRNGWAEKNGGNISQLLEASEIKHYLDTDRYLWTEPLGFDASPLAGNVFLVSGSGKYFKN
VQKNPADNLCIIKVSSDGASYHLLWGLENGGRPTSELASHLKCHIVRLSQDPDHRVILHTHATAVSAMTFVHDLDEAKFT
RTLWQMITECLVVFPDGVAVVPWMVAGTNELGEASAAKMNDSRIVVWAHHGIMGAGTTMDDAFGLVETVEKAAKIYMQIA
HFPTGIKQAITDEELVALAERFNVVPKAGILKEAGGVK

Specific function: Catalyzes the reversible cleavage of L-rhamnulose-1- phosphate to dihydroxyacetone phosphate (DHAP) and L-lactaldehyde

COG id: COG0235

COG function: function code G; Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the aldolase class II family. RhaD subfamily

Homologues:

Organism=Escherichia coli, GI1790336, Length=276, Percent_Identity=46.3768115942029, Blast_Score=256, Evalue=1e-69,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RHAD_LISW6 (A0AFI3)

Other databases:

- EMBL:   AM263198
- RefSeq:   YP_848548.1
- ProteinModelPortal:   A0AFI3
- SMR:   A0AFI3
- STRING:   A0AFI3
- GeneID:   4465511
- GenomeReviews:   AM263198_GR
- KEGG:   lwe:lwe0347
- NMPDR:   fig|386043.6.peg.333
- eggNOG:   COG0235
- HOGENOM:   HBG416653
- OMA:   MSHIARL
- PhylomeDB:   A0AFI3
- ProtClustDB:   PRK03634
- BioCyc:   LWEL386043:LWE0347-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00770
- InterPro:   IPR001303
- InterPro:   IPR013447
- Gene3D:   G3DSA:3.40.225.10
- TIGRFAMs:   TIGR02624

Pfam domain/function: PF00596 Aldolase_II; SSF53639 Aldolase_II_N

EC number: =4.1.2.19

Molecular weight: Translated: 30665; Mature: 30665

Theoretical pI: Translated: 5.94; Mature: 5.94

Prosite motif: NA

Important sites: ACT_SITE 116-116

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYSIYEAPFMKEMCEMTQNLWRNGWAEKNGGNISQLLEASEIKHYLDTDRYLWTEPLGFD
CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCC
ASPLAGNVFLVSGSGKYFKNVQKNPADNLCIIKVSSDGASYHLLWGLENGGRPTSELASH
CCCCCCEEEEEECCCHHHHHCCCCCCCCEEEEEEECCCCEEEEEEEECCCCCCHHHHHHH
LKCHIVRLSQDPDHRVILHTHATAVSAMTFVHDLDEAKFTRTLWQMITECLVVFPDGVAV
HEEEEEEECCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCEE
VPWMVAGTNELGEASAAKMNDSRIVVWAHHGIMGAGTTMDDAFGLVETVEKAAKIYMQIA
EEEEEECCCCCCCCHHHCCCCCEEEEEEECCEEECCCCHHHHHHHHHHHHHHHHHHHHHH
HFPTGIKQAITDEELVALAERFNVVPKAGILKEAGGVK
HCCCHHHHHHCHHHHHHHHHHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MYSIYEAPFMKEMCEMTQNLWRNGWAEKNGGNISQLLEASEIKHYLDTDRYLWTEPLGFD
CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCC
ASPLAGNVFLVSGSGKYFKNVQKNPADNLCIIKVSSDGASYHLLWGLENGGRPTSELASH
CCCCCCEEEEEECCCHHHHHCCCCCCCCEEEEEEECCCCEEEEEEEECCCCCCHHHHHHH
LKCHIVRLSQDPDHRVILHTHATAVSAMTFVHDLDEAKFTRTLWQMITECLVVFPDGVAV
HEEEEEEECCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCEE
VPWMVAGTNELGEASAAKMNDSRIVVWAHHGIMGAGTTMDDAFGLVETVEKAAKIYMQIA
EEEEEECCCCCCCCHHHCCCCCEEEEEEECCEEECCCCHHHHHHHHHHHHHHHHHHHHHH
HFPTGIKQAITDEELVALAERFNVVPKAGILKEAGGVK
HCCCHHHHHHCHHHHHHHHHHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA