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The map label for this gene is cph2 [H]

Identifier: 116691177

GI number: 116691177

Start: 3476953

End: 3478311

Strand: Direct

Name: cph2 [H]

Synonym: Bcen2424_3160

Alternate gene names: 116691177

Gene position: 3476953-3478311 (Clockwise)

Preceding gene: 116691176

Following gene: 116691179

Centisome position: 99.8

GC content: 69.83

Gene sequence:

>1359_bases
ATGGAAGGCATCCTGATCCAGCACACGACGCAACGTCAGCTGTGGTTCGGCGCGCTGACTGCGCTCGTCATCCTGCTCAC
GCTCGGGATCGCCGCGCCGCACGCGAACGTCGCGCTGCCGGCCGTCGAGCCGTTCATGCCGATGTGCGCGCTCACCGTGT
TCACGACCGCGAGCATCGCCGCGTTCTTCCTCGGCGCGCAGTTCACCGTGACGCGCCAGCCCGTGCTCGGTGCGCTCGGC
GGCGCCTATGCGTTCACCGCGCTCGCCGTCGCGCTGCAGCTGCTCACCTTCCCCGGCGTGTTCGCCCCGCACGGCCTGCT
CGGCGCGCGCCCGCAAAGCGCCGCGTGGATGTGGGTCTTCTGGCATGCCGGCTTTCCGTGCTTCGTGATGGCCGCGCTGG
TCGCACGCGAGCGGCTGACGCGCGCCCCGGTCGGCGCGAAAGAGACGCGCCGCTGGACCGTCGCGCTCGTCGGCGGGCCG
GCCATCGCGGCGGCGCTCCTGTGTGCGCTCGCGCTGAACGTGTCGCTGCCACCGGCATTCCACCCGCCCCGCGACGCAGC
CGTGCTGCCCATCAGTGGCATCGCGCTCGTCGTGTGGATTCTCAACGTGTTCGCGCTCGTGGCCGTGCTGGTCACGGGCC
GGCTGCGTACGACGCTCGACCTGTGGCTCGCGATCGCGGTGCTCGCCTGCCTCACGGATACGACGCTGAACCTGCTGTCC
ACCAACCGCTTCACGGTCGGCTGGTATGTCGCGCGCGTGTTCAGCATGTTCACGCCCGGCGTGCTCGTGTGCGTGCTCGC
GTGGGAAGTGACGATGCTGTATCAGCAGTTGTTCGAAGCGCATGCGACGCTGATCCGCTCTTCCGCGCGCGATGGACTCA
CCGGCGCGTTCAATCGCAGTCACTTCAACGACCATTTCCACACGCTGTTCCTGCAGGCGCGGCGGCAGGGCGAACCGCTG
TCGCTGCTGATGGTCGACGTCGACCGCTTCAAGGCGTACAACGACGCGTTCGGTCATGTGAAGGGCGATGCGTGCCTGAT
CGCCGTCGCGAATGCACTGGCCGGCGCGGTACGGCGGCCGGCCGACATCGTCGCGCGCTACGGCGGCGAGGAATTCGCGA
TCGTGCTGCCGAACACCGGCGCGCGCGGTGCGCGGGTGGTGGCCGACGAAGTGCGCGACGCCGTGCTGCGGCTCGACCTC
GCGATGCCCGACTCGCCGGCCGGGCGCGTGAGCGTCAGCGTCGGCTGCGCGACCGTGTCGGCCGACGATCTGTCGACGCC
CGACGCGTTGATCGAAGCCGCCGATGCCGCGCTGTATCGCGCGAAGGATGCGGGGCGAAACCGGGTCGTCGTCGCCTGA

Upstream 100 bases:

>100_bases
ATAACGCGATAGGATCGGGCCGCACCGGTCGCGCCGCGATCGGCAGGCGTGCCGCCCGGCGCAAGATCGGGCGTTCGGGC
ACGCGCGTCCGGGGGACTCC

Downstream 100 bases:

>100_bases
AAACGTCTGCTGTTTGGCGAATTGTTACGGTCATTGTGACCGAAATAATCCGCCGTTACGGATTGCGGTGCGGGGATACG
ATCGCTTACAGCCCGGGCCG

Product: diguanylate cyclase

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 452; Mature: 452

Protein sequence:

>452_residues
MEGILIQHTTQRQLWFGALTALVILLTLGIAAPHANVALPAVEPFMPMCALTVFTTASIAAFFLGAQFTVTRQPVLGALG
GAYAFTALAVALQLLTFPGVFAPHGLLGARPQSAAWMWVFWHAGFPCFVMAALVARERLTRAPVGAKETRRWTVALVGGP
AIAAALLCALALNVSLPPAFHPPRDAAVLPISGIALVVWILNVFALVAVLVTGRLRTTLDLWLAIAVLACLTDTTLNLLS
TNRFTVGWYVARVFSMFTPGVLVCVLAWEVTMLYQQLFEAHATLIRSSARDGLTGAFNRSHFNDHFHTLFLQARRQGEPL
SLLMVDVDRFKAYNDAFGHVKGDACLIAVANALAGAVRRPADIVARYGGEEFAIVLPNTGARGARVVADEVRDAVLRLDL
AMPDSPAGRVSVSVGCATVSADDLSTPDALIEAADAALYRAKDAGRNRVVVA

Sequences:

>Translated_452_residues
MEGILIQHTTQRQLWFGALTALVILLTLGIAAPHANVALPAVEPFMPMCALTVFTTASIAAFFLGAQFTVTRQPVLGALG
GAYAFTALAVALQLLTFPGVFAPHGLLGARPQSAAWMWVFWHAGFPCFVMAALVARERLTRAPVGAKETRRWTVALVGGP
AIAAALLCALALNVSLPPAFHPPRDAAVLPISGIALVVWILNVFALVAVLVTGRLRTTLDLWLAIAVLACLTDTTLNLLS
TNRFTVGWYVARVFSMFTPGVLVCVLAWEVTMLYQQLFEAHATLIRSSARDGLTGAFNRSHFNDHFHTLFLQARRQGEPL
SLLMVDVDRFKAYNDAFGHVKGDACLIAVANALAGAVRRPADIVARYGGEEFAIVLPNTGARGARVVADEVRDAVLRLDL
AMPDSPAGRVSVSVGCATVSADDLSTPDALIEAADAALYRAKDAGRNRVVVA
>Mature_452_residues
MEGILIQHTTQRQLWFGALTALVILLTLGIAAPHANVALPAVEPFMPMCALTVFTTASIAAFFLGAQFTVTRQPVLGALG
GAYAFTALAVALQLLTFPGVFAPHGLLGARPQSAAWMWVFWHAGFPCFVMAALVARERLTRAPVGAKETRRWTVALVGGP
AIAAALLCALALNVSLPPAFHPPRDAAVLPISGIALVVWILNVFALVAVLVTGRLRTTLDLWLAIAVLACLTDTTLNLLS
TNRFTVGWYVARVFSMFTPGVLVCVLAWEVTMLYQQLFEAHATLIRSSARDGLTGAFNRSHFNDHFHTLFLQARRQGEPL
SLLMVDVDRFKAYNDAFGHVKGDACLIAVANALAGAVRRPADIVARYGGEEFAIVLPNTGARGARVVADEVRDAVLRLDL
AMPDSPAGRVSVSVGCATVSADDLSTPDALIEAADAALYRAKDAGRNRVVVA

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Integral Membrane Protein [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI1787262, Length=236, Percent_Identity=32.6271186440678, Blast_Score=129, Evalue=4e-31,
Organism=Escherichia coli, GI1786584, Length=232, Percent_Identity=31.8965517241379, Blast_Score=120, Evalue=2e-28,
Organism=Escherichia coli, GI87081881, Length=201, Percent_Identity=34.3283582089552, Blast_Score=105, Evalue=8e-24,
Organism=Escherichia coli, GI145693134, Length=183, Percent_Identity=37.1584699453552, Blast_Score=99, Evalue=4e-22,
Organism=Escherichia coli, GI87082007, Length=213, Percent_Identity=31.4553990610329, Blast_Score=92, Evalue=8e-20,
Organism=Escherichia coli, GI1788085, Length=450, Percent_Identity=24.4444444444444, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1788381, Length=165, Percent_Identity=32.7272727272727, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI1787802, Length=161, Percent_Identity=32.2981366459627, Blast_Score=80, Evalue=3e-16,
Organism=Escherichia coli, GI87081977, Length=180, Percent_Identity=31.1111111111111, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI1787816, Length=169, Percent_Identity=36.094674556213, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1788956, Length=251, Percent_Identity=26.2948207171315, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1787056, Length=167, Percent_Identity=28.1437125748503, Blast_Score=66, Evalue=4e-12,
Organism=Escherichia coli, GI87081974, Length=171, Percent_Identity=23.9766081871345, Blast_Score=66, Evalue=5e-12,
Organism=Escherichia coli, GI1787541, Length=164, Percent_Identity=29.8780487804878, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 48228; Mature: 48228

Theoretical pI: Translated: 8.50; Mature: 8.50

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEGILIQHTTQRQLWFGALTALVILLTLGIAAPHANVALPAVEPFMPMCALTVFTTASIA
CCCEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCHHHHHHHHHHHHHHHHHHH
AFFLGAQFTVTRQPVLGALGGAYAFTALAVALQLLTFPGVFAPHGLLGARPQSAAWMWVF
HHHHCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEE
WHAGFPCFVMAALVARERLTRAPVGAKETRRWTVALVGGPAIAAALLCALALNVSLPPAF
ECCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHCCCCCCCC
HPPRDAAVLPISGIALVVWILNVFALVAVLVTGRLRTTLDLWLAIAVLACLTDTTLNLLS
CCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
TNRFTVGWYVARVFSMFTPGVLVCVLAWEVTMLYQQLFEAHATLIRSSARDGLTGAFNRS
CCCEEHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
HFNDHFHTLFLQARRQGEPLSLLMVDVDRFKAYNDAFGHVKGDACLIAVANALAGAVRRP
CCCHHHHHHHHHHHCCCCCEEEEEEEHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCC
ADIVARYGGEEFAIVLPNTGARGARVVADEVRDAVLRLDLAMPDSPAGRVSVSVGCATVS
HHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHEECCCCCCCCEEEEEEEEEEEC
ADDLSTPDALIEAADAALYRAKDAGRNRVVVA
CCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEC
>Mature Secondary Structure
MEGILIQHTTQRQLWFGALTALVILLTLGIAAPHANVALPAVEPFMPMCALTVFTTASIA
CCCEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCHHHHHHHHHHHHHHHHHHH
AFFLGAQFTVTRQPVLGALGGAYAFTALAVALQLLTFPGVFAPHGLLGARPQSAAWMWVF
HHHHCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEE
WHAGFPCFVMAALVARERLTRAPVGAKETRRWTVALVGGPAIAAALLCALALNVSLPPAF
ECCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHCCCCCCCC
HPPRDAAVLPISGIALVVWILNVFALVAVLVTGRLRTTLDLWLAIAVLACLTDTTLNLLS
CCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
TNRFTVGWYVARVFSMFTPGVLVCVLAWEVTMLYQQLFEAHATLIRSSARDGLTGAFNRS
CCCEEHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
HFNDHFHTLFLQARRQGEPLSLLMVDVDRFKAYNDAFGHVKGDACLIAVANALAGAVRRP
CCCHHHHHHHHHHHCCCCCEEEEEEEHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCC
ADIVARYGGEEFAIVLPNTGARGARVVADEVRDAVLRLDLAMPDSPAGRVSVSVGCATVS
HHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHEECCCCCCCCEEEEEEEEEEEC
ADDLSTPDALIEAADAALYRAKDAGRNRVVVA
CCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]