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The map label for this gene is ntrY [H]

Identifier: 116691139

GI number: 116691139

Start: 3435454

End: 3437868

Strand: Reverse

Name: ntrY [H]

Synonym: Bcen2424_3121

Alternate gene names: 116691139

Gene position: 3437868-3435454 (Counterclockwise)

Preceding gene: 116691140

Following gene: 116691138

Centisome position: 98.68

GC content: 67.58

Gene sequence:

>2415_bases
GTGCTAAATAAAGTACGCCGCGCGGCCAGCGGGAAGAGCCTCCTCATCCGCGTGATCGTCTCGACGGTCGCGATCACCGC
ACTGCTGCTGCTCGTGCTGCTCGCGGCCGCGAGCGCGAACACCGAATTCTTCGACCGCTACTACTCGTGGCTGTACGCGA
CCAACATCATCGTCGCGCTCGTGTTCCTGCTCGTGGTGCTCGGGCTGATCGGGATGATCGTCGTGCGCCTGAGGAAGGGC
AAGTTCGGCACGCGGCTGCTCGCGAAGCTCGCGGTGTTCTTCGCGCTCGTCGGCGTGGTGCCGGGCGGGATCATCTACAT
CGTGTCGTACCAGTTCGTGTCGCGCAGTATCGAGTCGTGGTTCGACGTGAACGTCGAGACGGCGCTGACGGCCGGGCTGA
ACCTCGGCCGCGGGATGCTCGATGCGTCGCTGTCCGATCTGCAGACCAAGGCGCGGCTGATGTCCGACCAGCTCGCGAGC
GTCGATGCGAACACGAACGGCACGACGCTCACGCTGCTGCGGCTGCGCGACCAGTTCGGCGTGCAGGACGCGACGATCGT
CGAGCCGAGTCGCGGCGGCTCGGGCGCGGCCCCCGACCTGCACATCGTCGCGCAGGCGTCGGGCAACTTCGCGGCGCTGA
TTCCGGACGACCTGCCGACGCCGCTGATGCTGAGCCAGGCGCGCGAACACGGCGCGTATGCGGCGATCGAGGGCGAAGTC
GACGGCGACCCGCGCGCGCATGGCGCGAAGGGCGCGCTGCGGTTGCGCGTCGTGCGGCCGATTCCCGATGCGACGACGTC
GCTGCTGCAGCCGGCGGAGCGGTTCCTGCAGCTCACGCAGCCGGTGCCGCCCGGGCTCGCGCACAACGCGGACGCCGTGC
AGCGCGCGTACCGCGAGTACCAGGAAAAGTCGCTCGGCCGCACGGGCCTGCGCAAGATGTACATCGGCACGCTGACACTC
GCGCTGTTCCTCGCGACCTTCATCGCGATGATGCTCGCGCTCGCGCTCGGCCAGCAGCTCGCGCGGCCGCTGTTCCTGCT
CGCGCAGGGCACGAAGGAGATCACGGAGGGCGACTACACGCCGAAGCGCGAGATCAAGACGCGCGACGAGCTCGGCTTCC
TCACGCAGTCGTTCAACGCGATGACGCGCCAGTTGTCCGAGGCGCGGCTCGCGGTCGAGAAGAACCGCATCGCGCTCGAG
CATTCGAAGACGTATCTCGAGAGCATCCTCGCGAACCTGACGGCCGGCGTGTTCGTGCTCGACCGCCAGTTCCGGCTGAC
GACGGCCAATCGCGGCGCCGAGCGGATCTTCCGGCAGCCGTTCAACTCGCTGATCGGCACGACGCTCGACCGGATCGGCG
TGGCCGCCGGGTTCGGCGCGATGGTGCGCAAGGCATTCGCCGATCGCGAGGCGGCGTCCGACGGCGGCAGCGGCGATCGC
GGCCACTGGCAGCAGCAGTTCGCGATCGAGGTGCCGGGCGAAACCGATCCGCTGACGTTGCTGGTGCGCGGCACGCGGCT
CGTGTCGACGGTCGAGGGGCAGGCCGACGATCCGCAGACGTCCGGCTACGTCGTCGTGTTCGACGACATCTCCGACGTGA
TTTCCGCACAGCGTTCGGTCGCGTGGGGCGAGGTCGCGCGGCGGCTCGCGCACGAGATCAAGAATCCGCTGACGCCGATC
CAGCTGTCGGCCGAGCGGCTGCAGATGAAGCTGTCGGACAAGCTCGCGCCGCCCGACGCGGACGTGCTCAAGCGCGGCGC
GACGATGATCGTGAACCAGGTGGCCGCGATGAAGCGGATGGTCGACGATTTCCGCGAATACGCGCGCACGCCGCCGGCGG
TGCTCGCGAACCTGCAGTTGAACGAACTGGCGAGCGAGGTGCTCGGGCTGTACGGCGTCGGCGAAGGCAAGAGCCCGATC
GTCGCCGAACTCGCGCCGTCGCTGCCGGTGATTCGCGGCGACGCGACGCAATTGCGCCAGGTGATTCACAACCTGCTGCA
GAATGCGCAGGATTCGGTCGCGGAGTCCGCGCATCCGCGTGTGTTGATCGAAACCAAGACAGTAGAATATGGCGACCCCG
ACGCCGAGGGCAAAACGCGCGTCGCGGTACGTCTGACCGTGTCCGACAACGGGCCCGGTTTTCCGGCACGCATCCTGACC
CGCGCGTTCGAGCCTTACGTGACGACGAAGGCGAAGGGCACGGGGCTCGGGCTGGCCACGGTCAAGAAAATCGTTGACGA
GCACGGCGCGCGGATCGATCTGCGCAATCGCATGCACGGCGAGACCGTCGAGGGTGCGCAGGTATCGATCCTGTTCCTGC
AGATGGCGAGCGATACGCCAGGCGCCGAACCGGGTGCACAGGACGGGACGACTCCCGCCAAGACAAAAGCAAGTGAGCAG
ACAAAGGCAGCGTAA

Upstream 100 bases:

>100_bases
ACGGCGCTGATGCCGAAGCCGTTCCAGGTCGATGCCGTGAACAACCGCGACTGGACGCTCGGGTCGGACTGGAAGCGCTT
CAACTTCACGGTGACCGAAC

Downstream 100 bases:

>100_bases
ATGGCAACCATCCTGGTGGTAGATGATGAAATGGGCATCCGGGAATTGCTCTCGGAGATCCTCAGCGATGAAGGACATGT
CGTCGAGGCGGCGGAGAACG

Product: periplasmic sensor signal transduction histidine kinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 804; Mature: 804

Protein sequence:

>804_residues
MLNKVRRAASGKSLLIRVIVSTVAITALLLLVLLAAASANTEFFDRYYSWLYATNIIVALVFLLVVLGLIGMIVVRLRKG
KFGTRLLAKLAVFFALVGVVPGGIIYIVSYQFVSRSIESWFDVNVETALTAGLNLGRGMLDASLSDLQTKARLMSDQLAS
VDANTNGTTLTLLRLRDQFGVQDATIVEPSRGGSGAAPDLHIVAQASGNFAALIPDDLPTPLMLSQAREHGAYAAIEGEV
DGDPRAHGAKGALRLRVVRPIPDATTSLLQPAERFLQLTQPVPPGLAHNADAVQRAYREYQEKSLGRTGLRKMYIGTLTL
ALFLATFIAMMLALALGQQLARPLFLLAQGTKEITEGDYTPKREIKTRDELGFLTQSFNAMTRQLSEARLAVEKNRIALE
HSKTYLESILANLTAGVFVLDRQFRLTTANRGAERIFRQPFNSLIGTTLDRIGVAAGFGAMVRKAFADREAASDGGSGDR
GHWQQQFAIEVPGETDPLTLLVRGTRLVSTVEGQADDPQTSGYVVVFDDISDVISAQRSVAWGEVARRLAHEIKNPLTPI
QLSAERLQMKLSDKLAPPDADVLKRGATMIVNQVAAMKRMVDDFREYARTPPAVLANLQLNELASEVLGLYGVGEGKSPI
VAELAPSLPVIRGDATQLRQVIHNLLQNAQDSVAESAHPRVLIETKTVEYGDPDAEGKTRVAVRLTVSDNGPGFPARILT
RAFEPYVTTKAKGTGLGLATVKKIVDEHGARIDLRNRMHGETVEGAQVSILFLQMASDTPGAEPGAQDGTTPAKTKASEQ
TKAA

Sequences:

>Translated_804_residues
MLNKVRRAASGKSLLIRVIVSTVAITALLLLVLLAAASANTEFFDRYYSWLYATNIIVALVFLLVVLGLIGMIVVRLRKG
KFGTRLLAKLAVFFALVGVVPGGIIYIVSYQFVSRSIESWFDVNVETALTAGLNLGRGMLDASLSDLQTKARLMSDQLAS
VDANTNGTTLTLLRLRDQFGVQDATIVEPSRGGSGAAPDLHIVAQASGNFAALIPDDLPTPLMLSQAREHGAYAAIEGEV
DGDPRAHGAKGALRLRVVRPIPDATTSLLQPAERFLQLTQPVPPGLAHNADAVQRAYREYQEKSLGRTGLRKMYIGTLTL
ALFLATFIAMMLALALGQQLARPLFLLAQGTKEITEGDYTPKREIKTRDELGFLTQSFNAMTRQLSEARLAVEKNRIALE
HSKTYLESILANLTAGVFVLDRQFRLTTANRGAERIFRQPFNSLIGTTLDRIGVAAGFGAMVRKAFADREAASDGGSGDR
GHWQQQFAIEVPGETDPLTLLVRGTRLVSTVEGQADDPQTSGYVVVFDDISDVISAQRSVAWGEVARRLAHEIKNPLTPI
QLSAERLQMKLSDKLAPPDADVLKRGATMIVNQVAAMKRMVDDFREYARTPPAVLANLQLNELASEVLGLYGVGEGKSPI
VAELAPSLPVIRGDATQLRQVIHNLLQNAQDSVAESAHPRVLIETKTVEYGDPDAEGKTRVAVRLTVSDNGPGFPARILT
RAFEPYVTTKAKGTGLGLATVKKIVDEHGARIDLRNRMHGETVEGAQVSILFLQMASDTPGAEPGAQDGTTPAKTKASEQ
TKAA
>Mature_804_residues
MLNKVRRAASGKSLLIRVIVSTVAITALLLLVLLAAASANTEFFDRYYSWLYATNIIVALVFLLVVLGLIGMIVVRLRKG
KFGTRLLAKLAVFFALVGVVPGGIIYIVSYQFVSRSIESWFDVNVETALTAGLNLGRGMLDASLSDLQTKARLMSDQLAS
VDANTNGTTLTLLRLRDQFGVQDATIVEPSRGGSGAAPDLHIVAQASGNFAALIPDDLPTPLMLSQAREHGAYAAIEGEV
DGDPRAHGAKGALRLRVVRPIPDATTSLLQPAERFLQLTQPVPPGLAHNADAVQRAYREYQEKSLGRTGLRKMYIGTLTL
ALFLATFIAMMLALALGQQLARPLFLLAQGTKEITEGDYTPKREIKTRDELGFLTQSFNAMTRQLSEARLAVEKNRIALE
HSKTYLESILANLTAGVFVLDRQFRLTTANRGAERIFRQPFNSLIGTTLDRIGVAAGFGAMVRKAFADREAASDGGSGDR
GHWQQQFAIEVPGETDPLTLLVRGTRLVSTVEGQADDPQTSGYVVVFDDISDVISAQRSVAWGEVARRLAHEIKNPLTPI
QLSAERLQMKLSDKLAPPDADVLKRGATMIVNQVAAMKRMVDDFREYARTPPAVLANLQLNELASEVLGLYGVGEGKSPI
VAELAPSLPVIRGDATQLRQVIHNLLQNAQDSVAESAHPRVLIETKTVEYGDPDAEGKTRVAVRLTVSDNGPGFPARILT
RAFEPYVTTKAKGTGLGLATVKKIVDEHGARIDLRNRMHGETVEGAQVSILFLQMASDTPGAEPGAQDGTTPAKTKASEQ
TKAA

Specific function: Member of the two-component regulatory system ntrY/ntrX involved in nitrogen level control. Probably activates ntrX by phosphorylation [H]

COG id: COG5000

COG function: function code T; Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI1788549, Length=415, Percent_Identity=26.0240963855422, Blast_Score=113, Evalue=4e-26,
Organism=Escherichia coli, GI1790300, Length=218, Percent_Identity=28.8990825688073, Blast_Score=87, Evalue=3e-18,
Organism=Escherichia coli, GI1790436, Length=220, Percent_Identity=30.4545454545455, Blast_Score=85, Evalue=2e-17,
Organism=Escherichia coli, GI1786912, Length=221, Percent_Identity=29.8642533936652, Blast_Score=63, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR003660
- InterPro:   IPR000014
- InterPro:   IPR013767
- InterPro:   IPR004358
- InterPro:   IPR003661
- InterPro:   IPR005467
- InterPro:   IPR009082
- InterPro:   IPR017232 [H]

Pfam domain/function: PF00672 HAMP; PF02518 HATPase_c; PF00512 HisKA; PF00989 PAS [H]

EC number: =2.7.13.3 [H]

Molecular weight: Translated: 86880; Mature: 86880

Theoretical pI: Translated: 9.44; Mature: 9.44

Prosite motif: PS50885 HAMP ; PS50109 HIS_KIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNKVRRAASGKSLLIRVIVSTVAITALLLLVLLAAASANTEFFDRYYSWLYATNIIVAL
CCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
VFLLVVLGLIGMIVVRLRKGKFGTRLLAKLAVFFALVGVVPGGIIYIVSYQFVSRSIESW
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHH
FDVNVETALTAGLNLGRGMLDASLSDLQTKARLMSDQLASVDANTNGTTLTLLRLRDQFG
HCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEHHHHC
VQDATIVEPSRGGSGAAPDLHIVAQASGNFAALIPDDLPTPLMLSQAREHGAYAAIEGEV
CCCCEEECCCCCCCCCCCCEEEEEECCCCEEEECCCCCCCHHHHHHHHHCCCEEEEECCC
DGDPRAHGAKGALRLRVVRPIPDATTSLLQPAERFLQLTQPVPPGLAHNADAVQRAYREY
CCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH
QEKSLGRTGLRKMYIGTLTLALFLATFIAMMLALALGQQLARPLFLLAQGTKEITEGDYT
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCC
PKREIKTRDELGFLTQSFNAMTRQLSEARLAVEKNRIALEHSKTYLESILANLTAGVFVL
CHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEHHHHHHHHHHHHHHHHHCCEEE
DRQFRLTTANRGAERIFRQPFNSLIGTTLDRIGVAAGFGAMVRKAFADREAASDGGSGDR
ECCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
GHWQQQFAIEVPGETDPLTLLVRGTRLVSTVEGQADDPQTSGYVVVFDDISDVISAQRSV
CCCCCEEEEECCCCCCCEEEEEECCHHHHHHCCCCCCCCCCCEEEEECCHHHHHHHHHHH
AWGEVARRLAHEIKNPLTPIQLSAERLQMKLSDKLAPPDADVLKRGATMIVNQVAAMKRM
HHHHHHHHHHHHHHCCCCCCEECHHHHHHHHHHCCCCCCHHHHHCCHHHHHHHHHHHHHH
VDDFREYARTPPAVLANLQLNELASEVLGLYGVGEGKSPIVAELAPSLPVIRGDATQLRQ
HHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCEEECCHHHHHH
VIHNLLQNAQDSVAESAHPRVLIETKTVEYGDPDAEGKTRVAVRLTVSDNGPGFPARILT
HHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCEEEEEEEEECCCCCCCHHHHHH
RAFEPYVTTKAKGTGLGLATVKKIVDEHGARIDLRNRMHGETVEGAQVSILFLQMASDTP
HHHCCCEECCCCCCCCHHHHHHHHHHHCCCEEEECCCCCCCCCCCCEEEEEEEEEECCCC
GAEPGAQDGTTPAKTKASEQTKAA
CCCCCCCCCCCCCCCCCCHHHCCC
>Mature Secondary Structure
MLNKVRRAASGKSLLIRVIVSTVAITALLLLVLLAAASANTEFFDRYYSWLYATNIIVAL
CCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
VFLLVVLGLIGMIVVRLRKGKFGTRLLAKLAVFFALVGVVPGGIIYIVSYQFVSRSIESW
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHH
FDVNVETALTAGLNLGRGMLDASLSDLQTKARLMSDQLASVDANTNGTTLTLLRLRDQFG
HCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEHHHHC
VQDATIVEPSRGGSGAAPDLHIVAQASGNFAALIPDDLPTPLMLSQAREHGAYAAIEGEV
CCCCEEECCCCCCCCCCCCEEEEEECCCCEEEECCCCCCCHHHHHHHHHCCCEEEEECCC
DGDPRAHGAKGALRLRVVRPIPDATTSLLQPAERFLQLTQPVPPGLAHNADAVQRAYREY
CCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH
QEKSLGRTGLRKMYIGTLTLALFLATFIAMMLALALGQQLARPLFLLAQGTKEITEGDYT
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCC
PKREIKTRDELGFLTQSFNAMTRQLSEARLAVEKNRIALEHSKTYLESILANLTAGVFVL
CHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEHHHHHHHHHHHHHHHHHCCEEE
DRQFRLTTANRGAERIFRQPFNSLIGTTLDRIGVAAGFGAMVRKAFADREAASDGGSGDR
ECCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
GHWQQQFAIEVPGETDPLTLLVRGTRLVSTVEGQADDPQTSGYVVVFDDISDVISAQRSV
CCCCCEEEEECCCCCCCEEEEEECCHHHHHHCCCCCCCCCCCEEEEECCHHHHHHHHHHH
AWGEVARRLAHEIKNPLTPIQLSAERLQMKLSDKLAPPDADVLKRGATMIVNQVAAMKRM
HHHHHHHHHHHHHHCCCCCCEECHHHHHHHHHHCCCCCCHHHHHCCHHHHHHHHHHHHHH
VDDFREYARTPPAVLANLQLNELASEVLGLYGVGEGKSPIVAELAPSLPVIRGDATQLRQ
HHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCEEECCHHHHHH
VIHNLLQNAQDSVAESAHPRVLIETKTVEYGDPDAEGKTRVAVRLTVSDNGPGFPARILT
HHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCEEEEEEEEECCCCCCCHHHHHH
RAFEPYVTTKAKGTGLGLATVKKIVDEHGARIDLRNRMHGETVEGAQVSILFLQMASDTP
HHHCCCEECCCCCCCCHHHHHHHHHHHCCCEEEECCCCCCCCCCCCEEEEEEEEEECCCC
GAEPGAQDGTTPAKTKASEQTKAA
CCCCCCCCCCCCCCCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1661370 [H]