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The map label for this gene is xerC [H]

Identifier: 116691105

GI number: 116691105

Start: 3400162

End: 3401082

Strand: Direct

Name: xerC [H]

Synonym: Bcen2424_3087

Alternate gene names: 116691105

Gene position: 3400162-3401082 (Clockwise)

Preceding gene: 116691104

Following gene: 116691106

Centisome position: 97.6

GC content: 68.4

Gene sequence:

>921_bases
ATGACTGACGATCCGATCGCCGCCTACCTGTCGAACCTGAAGCACGTCAGGCAGCTGTCGGAACACACGCTGCGCGCGTA
CACGCACGAACTCGACGAACTGAAGAAGCTCGCGGCCGGCCGGCCGCTCGAAGCATTGACCGCCGCCGACATGCGCGGCG
CGGTCGTGCGCGGGCACGCGGCCGGACTGTCCGCGCGCTCGATCTCGCACCGCCTTTCCGCATGGCGTGCGTTCTATCGC
TGGTTCGCGCAACGCGTCGAGATGCCCGCGAATCCCGTCGCCGGGGTACGCGCGCCCAAACGCGAGAAATCGCTGCCCAA
GGCGCTGTCGGTCGACGATGCGGTCGCACTCATGGACGCGCCGCTCGCCGGCACGACCGAAAGCATCCGCGACCACGCGA
TCCTCGAGCTGTTCTATTCGTCGGGGCTGCGCCTCGCCGAACTGGTCGGGCTCGACGTCCGGTACACGCAAGCCGACGGC
TACCGCTCGGCTGGCTGGCTCGATCTCGCCGAAGCCGAAGTCACCGTGCGCGGCAAGGGCAACAAGGAGCGCAAAGTGCC
GGTCGGCAGCAAGGCGATCGACGCGCTGAACGCGTGGCTCGCGGTGCGCGACGAATTCGTGAAGCACGATCCGCATCCGC
TGTTCGTGTCGGTGCGCGGCAACCGGATGTCGCCGGGCGTCGTGCGCGAGCGCGTGAAGCGTGCGGCGCTCGCCGCCGGC
ATCCCCGCCAACGTCCACCCGCACGTGTTGCGCCACTCGTTCGCGACGCACGTGCTGCAGTCGAGCGGCGACCTGCGCGC
GGTGCAGGAACTGCTCGGCCACGCGAGCGTCGCCGCGACGCAGATCTATACGTCGCTCGACTTCCAGCATCTCGCGAAGA
TTTACGACAGCGCGCATCCGCGCGCGAAGAAGCGCGACTGA

Upstream 100 bases:

>100_bases
CGCTTCCACGACGGGATGGCCACCGACTTCCTCGCGCAGATCGCGACGCTCGCGAGCGCCGCGCTCACGCGCCTGCTGCC
GCACTGATCCGCCGCACGCG

Downstream 100 bases:

>100_bases
CGCGCGTCCCGTGTTATCCGCCACGCGCGGCGGCCGGCACCGGCCGGCGTCGCGCGCGGCCCATTTCGATCTCATCATGC
AAACCGTCACCCTCAAGCCG

Product: site-specific tyrosine recombinase XerC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 306; Mature: 305

Protein sequence:

>306_residues
MTDDPIAAYLSNLKHVRQLSEHTLRAYTHELDELKKLAAGRPLEALTAADMRGAVVRGHAAGLSARSISHRLSAWRAFYR
WFAQRVEMPANPVAGVRAPKREKSLPKALSVDDAVALMDAPLAGTTESIRDHAILELFYSSGLRLAELVGLDVRYTQADG
YRSAGWLDLAEAEVTVRGKGNKERKVPVGSKAIDALNAWLAVRDEFVKHDPHPLFVSVRGNRMSPGVVRERVKRAALAAG
IPANVHPHVLRHSFATHVLQSSGDLRAVQELLGHASVAATQIYTSLDFQHLAKIYDSAHPRAKKRD

Sequences:

>Translated_306_residues
MTDDPIAAYLSNLKHVRQLSEHTLRAYTHELDELKKLAAGRPLEALTAADMRGAVVRGHAAGLSARSISHRLSAWRAFYR
WFAQRVEMPANPVAGVRAPKREKSLPKALSVDDAVALMDAPLAGTTESIRDHAILELFYSSGLRLAELVGLDVRYTQADG
YRSAGWLDLAEAEVTVRGKGNKERKVPVGSKAIDALNAWLAVRDEFVKHDPHPLFVSVRGNRMSPGVVRERVKRAALAAG
IPANVHPHVLRHSFATHVLQSSGDLRAVQELLGHASVAATQIYTSLDFQHLAKIYDSAHPRAKKRD
>Mature_305_residues
TDDPIAAYLSNLKHVRQLSEHTLRAYTHELDELKKLAAGRPLEALTAADMRGAVVRGHAAGLSARSISHRLSAWRAFYRW
FAQRVEMPANPVAGVRAPKREKSLPKALSVDDAVALMDAPLAGTTESIRDHAILELFYSSGLRLAELVGLDVRYTQADGY
RSAGWLDLAEAEVTVRGKGNKERKVPVGSKAIDALNAWLAVRDEFVKHDPHPLFVSVRGNRMSPGVVRERVKRAALAAGI
PANVHPHVLRHSFATHVLQSSGDLRAVQELLGHASVAATQIYTSLDFQHLAKIYDSAHPRAKKRD

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG4973

COG function: function code L; Site-specific recombinase XerC

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790244, Length=309, Percent_Identity=45.6310679611651, Blast_Score=249, Evalue=1e-67,
Organism=Escherichia coli, GI1789261, Length=302, Percent_Identity=35.7615894039735, Blast_Score=153, Evalue=1e-38,
Organism=Escherichia coli, GI1790768, Length=195, Percent_Identity=28.2051282051282, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1790767, Length=175, Percent_Identity=25.7142857142857, Blast_Score=66, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR011931 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 33625; Mature: 33494

Theoretical pI: Translated: 10.33; Mature: 10.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDDPIAAYLSNLKHVRQLSEHTLRAYTHELDELKKLAAGRPLEALTAADMRGAVVRGHA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHEECHH
AGLSARSISHRLSAWRAFYRWFAQRVEMPANPVAGVRAPKREKSLPKALSVDDAVALMDA
HCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHCC
PLAGTTESIRDHAILELFYSSGLRLAELVGLDVRYTQADGYRSAGWLDLAEAEVTVRGKG
CCCCCHHHHHHHHHHHHHHHCCCHHHHHHCCCEEEECCCCCCCCCCEEEECCEEEEECCC
NKERKVPVGSKAIDALNAWLAVRDEFVKHDPHPLFVSVRGNRMSPGVVRERVKRAALAAG
CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCC
IPANVHPHVLRHSFATHVLQSSGDLRAVQELLGHASVAATQIYTSLDFQHLAKIYDSAHP
CCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCC
RAKKRD
CCCCCC
>Mature Secondary Structure 
TDDPIAAYLSNLKHVRQLSEHTLRAYTHELDELKKLAAGRPLEALTAADMRGAVVRGHA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHEECHH
AGLSARSISHRLSAWRAFYRWFAQRVEMPANPVAGVRAPKREKSLPKALSVDDAVALMDA
HCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHCC
PLAGTTESIRDHAILELFYSSGLRLAELVGLDVRYTQADGYRSAGWLDLAEAEVTVRGKG
CCCCCHHHHHHHHHHHHHHHCCCHHHHHHCCCEEEECCCCCCCCCCEEEECCEEEEECCC
NKERKVPVGSKAIDALNAWLAVRDEFVKHDPHPLFVSVRGNRMSPGVVRERVKRAALAAG
CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCC
IPANVHPHVLRHSFATHVLQSSGDLRAVQELLGHASVAATQIYTSLDFQHLAKIYDSAHP
CCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCC
RAKKRD
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA