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The map label for this gene is ydiF [H]

Identifier: 116690942

GI number: 116690942

Start: 3231272

End: 3232927

Strand: Direct

Name: ydiF [H]

Synonym: Bcen2424_2924

Alternate gene names: 116690942

Gene position: 3231272-3232927 (Clockwise)

Preceding gene: 116690941

Following gene: 116690944

Centisome position: 92.75

GC content: 71.68

Gene sequence:

>1656_bases
ATGGCTGCTGCCACGCCCACCGGCGCGCTCGTCGCGCTTCATCACGTTTCCTTCCGCTTCGACGACGGCGTCACGCTGTT
CGATTCGCTCGACCTGTCCATCGATCGCACGCCCACCGGCATCGTCGGCCGCAACGGCGTCGGCAAGAGCCTGCTCGCGC
AACTGATCGCCGGCTGCCGTGCACCCAGCGCGGGAACGATCGAGCGGCATGCGCACGTCGTCTACGTCGCGCAGCAGCAC
GATCATGACCGCGACGACGCGGCGGCCGCCGCCCCGCGAACCGTCGCGCAGATCGCCGCGCTCGATGCACCGCTCGGCGC
GCTCGCGCGTCTCGCGGACGGCCACGCAACACCGAACGACTTCGACCTGATCGGCGATCGCTGGGATCTCGCGGAACGCC
TGCGCATGGCGCTCGACGCGGCCGGCCTGCACGACGTCCACGCCGACACGCCCGCGCACGCGCTGAGCGGCGGCCAGGTC
GCACGCGTGGCGCTGATCGGCGCGCTGCTGTCCGGCGCCGGCCTGCTCGTACTCGACGAACCGACCAACCATCTCGATGC
ACCGGGCCGCGCGTGGCTGCGCACGGCGCTCGACGGCTGGCGCGGCGGCGTCGTCATCGTGAGTCACGACCGTGCGCTGC
TGGCGGGCGTGCAACGGATCGTCGAGCTGACGCCGCACGGCGCACGCTCGTATGGCGGCAACTACGCGCTCTACCGCGCG
CAGCGCGACGCGGAACACCAAGCCGCGCACGCGGCGCTCGACCATGCGCGCACCGAGCGCGGGCGCGTACGGCGCAGGCT
CGAACAGGAACACGACACGATCCAGCGTCACGCGGCCGCGTCGCTGCGCGACGCGAAGACGGTCAACCTGTCGTCGATGG
CGCGTCAGAGCCGCAAGGGCGCCGCGCGCGCGATCATGGGGACCGTCCGGCGTCATCAGAGCGACTTCAAGGCGACGCTC
GACGCGCGCGTGCAGGAAGCGGCCGCGCGCGTCGAAGCCGACGCACCGGTGCTGGTATCGCTGCCGGGCACCGAGGTCAG
CGCGCGCCGCCAGCTGTTCACGCTCGAACGCGCGCAACTGCCGTGGCGCGTCGCGGGCGACGCCGACGCGATCACGTGGT
CCGCAAGCGGCGCCGTGCGCATTGCGCTGACGGGCCCGAACGGCTGCGGCAAATCGACGTTGCTGAGGATGCTCGCGGGC
GAGCTCGCGCCGCGCTCAGGCACCTGCACGACGCACGTGAGCGCCGCGTATCTCGACCAGCGGCTCGCGCTGCTCGACCC
CGAGCGCTCGATCGTCGAGCAACTGGGCCTGCTCGATACGCCCCTTGCCGAAGGTGATCTGCGCAGCCGTCTCGCGCTGC
TGCAACTCGACGCGACGCGTGCGACGCAACCCGCGCGGCAACTGAGCGGCGGCGAACGGCTGAAGGCCGCGCTCGCGTGC
GCATTGTGGCGCGGCACGCCCGCGCAACTGCTGCTGCTCGACGAGCCGACCAATCACCTCGATCTCGAATCGGTGCGGGC
GATCGAAGCGGCGCTGGCCGGCTTCCCCGGCGCGATCGTGGTCGCGTCGCACGACGCCGCGTTTCTCGCGGCGCTCGAAC
CAACGCACACGATGCAGTGGCATCGCGACGGATGGCGTTACGAACCCGTCGCGTAA

Upstream 100 bases:

>100_bases
ACGCCAGCCAAAGTGAACCACTAAGCCTTCCCGAAATGTTTTCGCCGCCCGTGCCACGCACGCCGCGCGCGAAGGTCTTC
ACGCATTTTTGGAGGTGCTC

Downstream 100 bases:

>100_bases
GCGCTACGAAAAACGCTCAGCCCGCGGTACGGAACCGCAGCACCCCGTCGTCGCCCTGCTCGCGCACGAGTTCGCCCGCG
AGCCACAGCAGGTTCAGGTG

Product: ABC transporter related

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 551; Mature: 550

Protein sequence:

>551_residues
MAAATPTGALVALHHVSFRFDDGVTLFDSLDLSIDRTPTGIVGRNGVGKSLLAQLIAGCRAPSAGTIERHAHVVYVAQQH
DHDRDDAAAAAPRTVAQIAALDAPLGALARLADGHATPNDFDLIGDRWDLAERLRMALDAAGLHDVHADTPAHALSGGQV
ARVALIGALLSGAGLLVLDEPTNHLDAPGRAWLRTALDGWRGGVVIVSHDRALLAGVQRIVELTPHGARSYGGNYALYRA
QRDAEHQAAHAALDHARTERGRVRRRLEQEHDTIQRHAAASLRDAKTVNLSSMARQSRKGAARAIMGTVRRHQSDFKATL
DARVQEAAARVEADAPVLVSLPGTEVSARRQLFTLERAQLPWRVAGDADAITWSASGAVRIALTGPNGCGKSTLLRMLAG
ELAPRSGTCTTHVSAAYLDQRLALLDPERSIVEQLGLLDTPLAEGDLRSRLALLQLDATRATQPARQLSGGERLKAALAC
ALWRGTPAQLLLLDEPTNHLDLESVRAIEAALAGFPGAIVVASHDAAFLAALEPTHTMQWHRDGWRYEPVA

Sequences:

>Translated_551_residues
MAAATPTGALVALHHVSFRFDDGVTLFDSLDLSIDRTPTGIVGRNGVGKSLLAQLIAGCRAPSAGTIERHAHVVYVAQQH
DHDRDDAAAAAPRTVAQIAALDAPLGALARLADGHATPNDFDLIGDRWDLAERLRMALDAAGLHDVHADTPAHALSGGQV
ARVALIGALLSGAGLLVLDEPTNHLDAPGRAWLRTALDGWRGGVVIVSHDRALLAGVQRIVELTPHGARSYGGNYALYRA
QRDAEHQAAHAALDHARTERGRVRRRLEQEHDTIQRHAAASLRDAKTVNLSSMARQSRKGAARAIMGTVRRHQSDFKATL
DARVQEAAARVEADAPVLVSLPGTEVSARRQLFTLERAQLPWRVAGDADAITWSASGAVRIALTGPNGCGKSTLLRMLAG
ELAPRSGTCTTHVSAAYLDQRLALLDPERSIVEQLGLLDTPLAEGDLRSRLALLQLDATRATQPARQLSGGERLKAALAC
ALWRGTPAQLLLLDEPTNHLDLESVRAIEAALAGFPGAIVVASHDAAFLAALEPTHTMQWHRDGWRYEPVA
>Mature_550_residues
AAATPTGALVALHHVSFRFDDGVTLFDSLDLSIDRTPTGIVGRNGVGKSLLAQLIAGCRAPSAGTIERHAHVVYVAQQHD
HDRDDAAAAAPRTVAQIAALDAPLGALARLADGHATPNDFDLIGDRWDLAERLRMALDAAGLHDVHADTPAHALSGGQVA
RVALIGALLSGAGLLVLDEPTNHLDAPGRAWLRTALDGWRGGVVIVSHDRALLAGVQRIVELTPHGARSYGGNYALYRAQ
RDAEHQAAHAALDHARTERGRVRRRLEQEHDTIQRHAAASLRDAKTVNLSSMARQSRKGAARAIMGTVRRHQSDFKATLD
ARVQEAAARVEADAPVLVSLPGTEVSARRQLFTLERAQLPWRVAGDADAITWSASGAVRIALTGPNGCGKSTLLRMLAGE
LAPRSGTCTTHVSAAYLDQRLALLDPERSIVEQLGLLDTPLAEGDLRSRLALLQLDATRATQPARQLSGGERLKAALACA
LWRGTPAQLLLLDEPTNHLDLESVRAIEAALAGFPGAIVVASHDAAFLAALEPTHTMQWHRDGWRYEPVA

Specific function: Unknown

COG id: COG0488

COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transporter domains [H]

Homologues:

Organism=Homo sapiens, GI148612853, Length=515, Percent_Identity=26.9902912621359, Blast_Score=136, Evalue=6e-32,
Organism=Homo sapiens, GI10947137, Length=543, Percent_Identity=27.0718232044199, Blast_Score=128, Evalue=1e-29,
Organism=Homo sapiens, GI27881506, Length=543, Percent_Identity=27.0718232044199, Blast_Score=128, Evalue=1e-29,
Organism=Homo sapiens, GI69354671, Length=428, Percent_Identity=27.5700934579439, Blast_Score=116, Evalue=5e-26,
Organism=Homo sapiens, GI10947135, Length=428, Percent_Identity=27.5700934579439, Blast_Score=116, Evalue=7e-26,
Organism=Escherichia coli, GI1789751, Length=500, Percent_Identity=30.8, Blast_Score=172, Evalue=6e-44,
Organism=Escherichia coli, GI1787182, Length=558, Percent_Identity=28.3154121863799, Blast_Score=169, Evalue=5e-43,
Organism=Escherichia coli, GI2367384, Length=535, Percent_Identity=31.588785046729, Blast_Score=167, Evalue=2e-42,
Organism=Escherichia coli, GI1787041, Length=518, Percent_Identity=25.0965250965251, Blast_Score=121, Evalue=1e-28,
Organism=Escherichia coli, GI1790739, Length=143, Percent_Identity=37.7622377622378, Blast_Score=64, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17559834, Length=519, Percent_Identity=28.3236994219653, Blast_Score=149, Evalue=3e-36,
Organism=Caenorhabditis elegans, GI17555318, Length=508, Percent_Identity=27.755905511811, Blast_Score=147, Evalue=2e-35,
Organism=Caenorhabditis elegans, GI17553372, Length=525, Percent_Identity=27.6190476190476, Blast_Score=118, Evalue=1e-26,
Organism=Saccharomyces cerevisiae, GI6320874, Length=551, Percent_Identity=26.497277676951, Blast_Score=124, Evalue=4e-29,
Organism=Saccharomyces cerevisiae, GI6321121, Length=534, Percent_Identity=25.2808988764045, Blast_Score=117, Evalue=3e-27,
Organism=Saccharomyces cerevisiae, GI6323278, Length=153, Percent_Identity=33.3333333333333, Blast_Score=68, Evalue=4e-12,
Organism=Saccharomyces cerevisiae, GI6324314, Length=158, Percent_Identity=33.5443037974684, Blast_Score=67, Evalue=7e-12,
Organism=Saccharomyces cerevisiae, GI6325030, Length=76, Percent_Identity=44.7368421052632, Blast_Score=67, Evalue=8e-12,
Organism=Drosophila melanogaster, GI24642252, Length=542, Percent_Identity=28.0442804428044, Blast_Score=154, Evalue=1e-37,
Organism=Drosophila melanogaster, GI18859989, Length=542, Percent_Identity=28.0442804428044, Blast_Score=154, Evalue=1e-37,
Organism=Drosophila melanogaster, GI24641342, Length=509, Percent_Identity=28.2907662082515, Blast_Score=142, Evalue=4e-34,
Organism=Drosophila melanogaster, GI24666836, Length=550, Percent_Identity=27.4545454545455, Blast_Score=134, Evalue=1e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 58802; Mature: 58671

Theoretical pI: Translated: 7.30; Mature: 7.30

Prosite motif: PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAAATPTGALVALHHVSFRFDDGVTLFDSLDLSIDRTPTGIVGRNGVGKSLLAQLIAGCR
CCCCCCCCCEEEEEEEEEEECCCCEEEECCCCEECCCCCCCCCCCCCCHHHHHHHHHHCC
APSAGTIERHAHVVYVAQQHDHDRDDAAAAAPRTVAQIAALDAPLGALARLADGHATPND
CCCCCCCCCCEEEEEEECCCCCCCCHHHHHCCHHHHHHHHHCCCHHHHHHHHCCCCCCCC
FDLIGDRWDLAERLRMALDAAGLHDVHADTPAHALSGGQVARVALIGALLSGAGLLVLDE
CCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHCCCEEEECC
PTNHLDAPGRAWLRTALDGWRGGVVIVSHDRALLAGVQRIVELTPHGARSYGGNYALYRA
CCCCCCCCHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHCCCCCCHHCCCCEEEEEC
QRDAEHQAAHAALDHARTERGRVRRRLEQEHDTIQRHAAASLRDAKTVNLSSMARQSRKG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
AARAIMGTVRRHQSDFKATLDARVQEAAARVEADAPVLVSLPGTEVSARRQLFTLERAQL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHCC
PWRVAGDADAITWSASGAVRIALTGPNGCGKSTLLRMLAGELAPRSGTCTTHVSAAYLDQ
CEEECCCCCEEEEECCCEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
RLALLDPERSIVEQLGLLDTPLAEGDLRSRLALLQLDATRATQPARQLSGGERLKAALAC
HHHHCCCHHHHHHHCCCCCCCCCCCHHHHHEEHEEECCHHCCCHHHHCCCHHHHHHHHHH
ALWRGTPAQLLLLDEPTNHLDLESVRAIEAALAGFPGAIVVASHDAAFLAALEPTHTMQW
HHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCEEEEECCCCCCCEE
HRDGWRYEPVA
CCCCCEECCCC
>Mature Secondary Structure 
AAATPTGALVALHHVSFRFDDGVTLFDSLDLSIDRTPTGIVGRNGVGKSLLAQLIAGCR
CCCCCCCCEEEEEEEEEEECCCCEEEECCCCEECCCCCCCCCCCCCCHHHHHHHHHHCC
APSAGTIERHAHVVYVAQQHDHDRDDAAAAAPRTVAQIAALDAPLGALARLADGHATPND
CCCCCCCCCCEEEEEEECCCCCCCCHHHHHCCHHHHHHHHHCCCHHHHHHHHCCCCCCCC
FDLIGDRWDLAERLRMALDAAGLHDVHADTPAHALSGGQVARVALIGALLSGAGLLVLDE
CCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHCCCEEEECC
PTNHLDAPGRAWLRTALDGWRGGVVIVSHDRALLAGVQRIVELTPHGARSYGGNYALYRA
CCCCCCCCHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHCCCCCCHHCCCCEEEEEC
QRDAEHQAAHAALDHARTERGRVRRRLEQEHDTIQRHAAASLRDAKTVNLSSMARQSRKG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
AARAIMGTVRRHQSDFKATLDARVQEAAARVEADAPVLVSLPGTEVSARRQLFTLERAQL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHCC
PWRVAGDADAITWSASGAVRIALTGPNGCGKSTLLRMLAGELAPRSGTCTTHVSAAYLDQ
CEEECCCCCEEEEECCCEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
RLALLDPERSIVEQLGLLDTPLAEGDLRSRLALLQLDATRATQPARQLSGGERLKAALAC
HHHHCCCHHHHHHHCCCCCCCCCCCHHHHHEEHEEECCHHCCCHHHHCCCHHHHHHHHHH
ALWRGTPAQLLLLDEPTNHLDLESVRAIEAALAGFPGAIVVASHDAAFLAALEPTHTMQW
HHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCEEEEECCCCCCCEE
HRDGWRYEPVA
CCCCCEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]