| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
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The map label for this gene is argS [H]
Identifier: 116690937
GI number: 116690937
Start: 3224726
End: 3226507
Strand: Direct
Name: argS [H]
Synonym: Bcen2424_2919
Alternate gene names: 116690937
Gene position: 3224726-3226507 (Clockwise)
Preceding gene: 116690935
Following gene: 116690938
Centisome position: 92.56
GC content: 67.68
Gene sequence:
>1782_bases ATGCTGCCAGCACACAAACAGACCCTCGAAGCCCTGCTCGCGGATAGCGTCAAGCAGGTCGCACACGCGCTGAAAGGCGC CGACGCAGCATTCGTCGCCCCCGCCATCACGCTGGAGCGCCCCAAGGTCGCCGCGCACGGCGACGTCGCGTGCAACGTCG CGATGCAGCTCGCGAAGCCGCTCGGCACGAATCCGCGCCAGCTCGCCGAGCAGATCGTCGCCGCCCTCACCGCGCAGCCG GCCGCGCAAGGCCTCGTCGAAGCCGCCGAGATCGCCGGGCCCGGCTTCATCAACCTGCGCCTGTCGGCCGCCGCGAAACA GGCGGTAATCGCCGCCGTGTTCGAGCAGGGCCGCGCGTTCGGCACGTCGGATCGCGAGAAAGGCAAGCAAGTGTTGCTGG AATTCGTGTCGGCCAACCCGACCGGCCCGCTGCACGTCGGTCACGGCCGTCAGGCCGCGCTCGGCGACGTGCTCGCGAAC GTGATCGCGAGCCAGGGCTACGCGGTGCACCGCGAGTTCTACTACAACGACGCGGGCGTGCAGATCGGCAACCTGGCGAT CTCGACGCAGGCGCGCGCGCGCGGCCTGAAGCCGGGCGACGCCGGCTGGCCGGAAGCCGCGTACAACGGTGAGTACATCG CCGACATCGCGCGCGACTACCTGAACGGCGAAACGGTCGCCGCGTCGGACGGCGAGCCGGTCAAGGGCACGGGCGACGTC GAGGATCTCGACGCGATCCGCAAGTTCGCGGTCACCTACCTGCGTCGCGAGCAGGACATGGACCTGCAGGCGTTCGGCGT GAAGTTCGACCAGTACTACCTCGAGTCGTCGCTGTACAGCGAAGGCCGCGTCGAGAAGACGGTCGACGCGCTGGTCAAGG CCGGCATGACCTACGAGCAGGACGGCGCGCTGTGGCTGCGCACGACCGACGAAGGCGACGACAAGGATCGCGTGATGCGC AAGTCGGACGGCACGTACACATACTTCGTGCCGGACGTCGCGTACCACGTGACGAAGTGGGAGCGCGGCTTCACGAAGGT GATCAACATCCAGGGTTCGGACCACCACGGCACGATCGCGCGCGTGCGCGCCGGCCTGCAGGGGCTGCATATCGGCATTC CGAAGGGCTATCCCGACTACGTGCTGCACAAGATGGTCACCGTGATGCGCGACGGCCAGGAAGTGAAGATCTCGAAGCGC GCGGGCAGCTACGTGACGGTGCGCGACCTGATCGAATGGTCGGGCGGCGCGGCGGCGGGCCAGGAAGCGGCCCCCGACCT GATCGACGAGGCAACCATCACGCGCGGCCGCGACGCGGTGCGTTTCTTCCTGATCTCGCGCAAGGCCGATACGGAGTTCG TGTTCGACATCGACCTCGCGCTGAAACAGAACGACGAAAACCCGGTCTATTACGTCCAGTACGCGCATGCGCGGATCTGC TCGGTGCTCAACGAACTGAAGTCGCGCTACAACGTCGACGTCGCGCAACTGCCGGGCGCCGACCTGTCGCAGCTGACGAG CGCGCAAGCGGCGTCGCTGATGCAGAAGCTGGCCGAGTATCCGGACATGCTCACGCACGCGGCGAACGAGCTGGCGCCGC ACGCGGTCGCGTTCTACCTGCGCGATCTCGCTGGCGAATTCCACTCGTTCTACAATGCGGAGCGCGTGCTGGTCGACGAC GAGGCGCCGCGCAATGCGCGCGCCGCGCTGCTCGCCGCGACCCGGCAGGTGCTCGAGAACGGCCTGGCGGTGCTCGGCGT ATCCGCGCCCGCCAAGATGTAA
Upstream 100 bases:
>100_bases TTAGCACCTGTTAAAATTCTGCGATCCCTGAAACGCGCGCTTAAAAAGCGTGCCGGCGGGCCGGCGTTTCCGGCCGCCAC CAACGAAGCCTTCTACCAGC
Downstream 100 bases:
>100_bases GGATGCAAGCGGCCCGGAACCGGGCCGCGAATGGCTGCGGCGGCGGCCGCCGTCAGGTTGCCCGTCGTCGGATGCGCGTC GTCGGATGCCCGCCGCAGCC
Product: arginyl-tRNA synthetase
Products: NA
Alternate protein names: Arginine--tRNA ligase; ArgRS [H]
Number of amino acids: Translated: 593; Mature: 593
Protein sequence:
>593_residues MLPAHKQTLEALLADSVKQVAHALKGADAAFVAPAITLERPKVAAHGDVACNVAMQLAKPLGTNPRQLAEQIVAALTAQP AAQGLVEAAEIAGPGFINLRLSAAAKQAVIAAVFEQGRAFGTSDREKGKQVLLEFVSANPTGPLHVGHGRQAALGDVLAN VIASQGYAVHREFYYNDAGVQIGNLAISTQARARGLKPGDAGWPEAAYNGEYIADIARDYLNGETVAASDGEPVKGTGDV EDLDAIRKFAVTYLRREQDMDLQAFGVKFDQYYLESSLYSEGRVEKTVDALVKAGMTYEQDGALWLRTTDEGDDKDRVMR KSDGTYTYFVPDVAYHVTKWERGFTKVINIQGSDHHGTIARVRAGLQGLHIGIPKGYPDYVLHKMVTVMRDGQEVKISKR AGSYVTVRDLIEWSGGAAAGQEAAPDLIDEATITRGRDAVRFFLISRKADTEFVFDIDLALKQNDENPVYYVQYAHARIC SVLNELKSRYNVDVAQLPGADLSQLTSAQAASLMQKLAEYPDMLTHAANELAPHAVAFYLRDLAGEFHSFYNAERVLVDD EAPRNARAALLAATRQVLENGLAVLGVSAPAKM
Sequences:
>Translated_593_residues MLPAHKQTLEALLADSVKQVAHALKGADAAFVAPAITLERPKVAAHGDVACNVAMQLAKPLGTNPRQLAEQIVAALTAQP AAQGLVEAAEIAGPGFINLRLSAAAKQAVIAAVFEQGRAFGTSDREKGKQVLLEFVSANPTGPLHVGHGRQAALGDVLAN VIASQGYAVHREFYYNDAGVQIGNLAISTQARARGLKPGDAGWPEAAYNGEYIADIARDYLNGETVAASDGEPVKGTGDV EDLDAIRKFAVTYLRREQDMDLQAFGVKFDQYYLESSLYSEGRVEKTVDALVKAGMTYEQDGALWLRTTDEGDDKDRVMR KSDGTYTYFVPDVAYHVTKWERGFTKVINIQGSDHHGTIARVRAGLQGLHIGIPKGYPDYVLHKMVTVMRDGQEVKISKR AGSYVTVRDLIEWSGGAAAGQEAAPDLIDEATITRGRDAVRFFLISRKADTEFVFDIDLALKQNDENPVYYVQYAHARIC SVLNELKSRYNVDVAQLPGADLSQLTSAQAASLMQKLAEYPDMLTHAANELAPHAVAFYLRDLAGEFHSFYNAERVLVDD EAPRNARAALLAATRQVLENGLAVLGVSAPAKM >Mature_593_residues MLPAHKQTLEALLADSVKQVAHALKGADAAFVAPAITLERPKVAAHGDVACNVAMQLAKPLGTNPRQLAEQIVAALTAQP AAQGLVEAAEIAGPGFINLRLSAAAKQAVIAAVFEQGRAFGTSDREKGKQVLLEFVSANPTGPLHVGHGRQAALGDVLAN VIASQGYAVHREFYYNDAGVQIGNLAISTQARARGLKPGDAGWPEAAYNGEYIADIARDYLNGETVAASDGEPVKGTGDV EDLDAIRKFAVTYLRREQDMDLQAFGVKFDQYYLESSLYSEGRVEKTVDALVKAGMTYEQDGALWLRTTDEGDDKDRVMR KSDGTYTYFVPDVAYHVTKWERGFTKVINIQGSDHHGTIARVRAGLQGLHIGIPKGYPDYVLHKMVTVMRDGQEVKISKR AGSYVTVRDLIEWSGGAAAGQEAAPDLIDEATITRGRDAVRFFLISRKADTEFVFDIDLALKQNDENPVYYVQYAHARIC SVLNELKSRYNVDVAQLPGADLSQLTSAQAASLMQKLAEYPDMLTHAANELAPHAVAFYLRDLAGEFHSFYNAERVLVDD EAPRNARAALLAATRQVLENGLAVLGVSAPAKM
Specific function: Unknown
COG id: COG0018
COG function: function code J; Arginyl-tRNA synthetase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-I aminoacyl-tRNA synthetase family [H]
Homologues:
Organism=Homo sapiens, GI15149476, Length=607, Percent_Identity=23.0642504118616, Blast_Score=96, Evalue=1e-19, Organism=Escherichia coli, GI1788184, Length=608, Percent_Identity=26.9736842105263, Blast_Score=142, Evalue=6e-35, Organism=Saccharomyces cerevisiae, GI6320548, Length=617, Percent_Identity=26.2560777957861, Blast_Score=134, Evalue=3e-32, Organism=Saccharomyces cerevisiae, GI6321883, Length=615, Percent_Identity=24.0650406504065, Blast_Score=112, Evalue=2e-25, Organism=Drosophila melanogaster, GI28571570, Length=494, Percent_Identity=23.2793522267206, Blast_Score=72, Evalue=8e-13,
Paralogues:
None
Copy number: 789 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 800 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001412 - InterPro: IPR001278 - InterPro: IPR015945 - InterPro: IPR005148 - InterPro: IPR008909 - InterPro: IPR014729 - InterPro: IPR009080 [H]
Pfam domain/function: PF03485 Arg_tRNA_synt_N; PF05746 DALR_1; PF00750 tRNA-synt_1d [H]
EC number: =6.1.1.19 [H]
Molecular weight: Translated: 64242; Mature: 64242
Theoretical pI: Translated: 5.76; Mature: 5.76
Prosite motif: PS00178 AA_TRNA_LIGASE_I
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLPAHKQTLEALLADSVKQVAHALKGADAAFVAPAITLERPKVAAHGDVACNVAMQLAKP CCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCEEEECCCCCCCCCCHHHHHHHHHHHC LGTNPRQLAEQIVAALTAQPAAQGLVEAAEIAGPGFINLRLSAAAKQAVIAAVFEQGRAF CCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHCCCC GTSDREKGKQVLLEFVSANPTGPLHVGHGRQAALGDVLANVIASQGYAVHREFYYNDAGV CCCCHHHHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHHHHHCCCEEEHEEEECCCCC QIGNLAISTQARARGLKPGDAGWPEAAYNGEYIADIARDYLNGETVAASDGEPVKGTGDV EECCEEEECHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEECCCCCCCCCCCCH EDLDAIRKFAVTYLRREQDMDLQAFGVKFDQYYLESSLYSEGRVEKTVDALVKAGMTYEQ HHHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEC DGALWLRTTDEGDDKDRVMRKSDGTYTYFVPDVAYHVTKWERGFTKVINIQGSDHHGTIA CCEEEEEECCCCCCHHHHHHCCCCCEEEEECHHHHHHHHHHCCCEEEEEECCCCCCCHHH RVRAGLQGLHIGIPKGYPDYVLHKMVTVMRDGQEVKISKRAGSYVTVRDLIEWSGGAAAG HHHHCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCCCEEEHHHHHHCCCCCCCC QEAAPDLIDEATITRGRDAVRFFLISRKADTEFVFDIDLALKQNDENPVYYVQYAHARIC CCCCCHHHHHHHHCCCCHHEEEEEEECCCCCEEEEEEEEEEECCCCCCEEEEEEHHHHHH SVLNELKSRYNVDVAQLPGADLSQLTSAQAASLMQKLAEYPDMLTHAANELAPHAVAFYL HHHHHHHHHHCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RDLAGEFHSFYNAERVLVDDEAPRNARAALLAATRQVLENGLAVLGVSAPAKM HHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCC >Mature Secondary Structure MLPAHKQTLEALLADSVKQVAHALKGADAAFVAPAITLERPKVAAHGDVACNVAMQLAKP CCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCEEEECCCCCCCCCCHHHHHHHHHHHC LGTNPRQLAEQIVAALTAQPAAQGLVEAAEIAGPGFINLRLSAAAKQAVIAAVFEQGRAF CCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHCCCC GTSDREKGKQVLLEFVSANPTGPLHVGHGRQAALGDVLANVIASQGYAVHREFYYNDAGV CCCCHHHHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHHHHHCCCEEEHEEEECCCCC QIGNLAISTQARARGLKPGDAGWPEAAYNGEYIADIARDYLNGETVAASDGEPVKGTGDV EECCEEEECHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEECCCCCCCCCCCCH EDLDAIRKFAVTYLRREQDMDLQAFGVKFDQYYLESSLYSEGRVEKTVDALVKAGMTYEQ HHHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEC DGALWLRTTDEGDDKDRVMRKSDGTYTYFVPDVAYHVTKWERGFTKVINIQGSDHHGTIA CCEEEEEECCCCCCHHHHHHCCCCCEEEEECHHHHHHHHHHCCCEEEEEECCCCCCCHHH RVRAGLQGLHIGIPKGYPDYVLHKMVTVMRDGQEVKISKRAGSYVTVRDLIEWSGGAAAG HHHHCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCCCEEEHHHHHHCCCCCCCC QEAAPDLIDEATITRGRDAVRFFLISRKADTEFVFDIDLALKQNDENPVYYVQYAHARIC CCCCCHHHHHHHHCCCCHHEEEEEEECCCCCEEEEEEEEEEECCCCCCEEEEEEHHHHHH SVLNELKSRYNVDVAQLPGADLSQLTSAQAASLMQKLAEYPDMLTHAANELAPHAVAFYL HHHHHHHHHHCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RDLAGEFHSFYNAERVLVDDEAPRNARAALLAATRQVLENGLAVLGVSAPAKM HHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA