| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
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The map label for this gene is 116690932
Identifier: 116690932
GI number: 116690932
Start: 3218287
End: 3219543
Strand: Direct
Name: 116690932
Synonym: Bcen2424_2914
Alternate gene names: NA
Gene position: 3218287-3219543 (Clockwise)
Preceding gene: 116690931
Following gene: 116690933
Centisome position: 92.38
GC content: 72.47
Gene sequence:
>1257_bases ATGCCCATGCAGCCTGCCGACCTTCGCCCGACTCACGCCCAGCCCCGCCGCTGGCTGCGCGTGGGCGTCGCGCTCGTCGC CGTGCTGGTGCTGCATGCGCTCGCCGGGTTCTGGCTGATGCGCAACCGCGAATCGTTCACGCCGCCGCCGCCCGCCGACA TCCCCGTGCAGATCGAGTTGCTGAAACCGCAGCCGATCGAGCGCCAGCCGGCCCCGCCGGCGCCGAAGCCGGTCGAACGT CCGGCCGCACCGGCCGCGCCCAAGGCCGCCCCGCCGAAACCCGCGCAGTCGCACGAGCCGGTCCTCACGTCGACGCAGAC GGCCGAGCACGGCGAACCGCCGGCGGCGGCCGCGTCCGCTGCGAGCGGCACACCGGGGGCTTCGGGCGCCTCGGCCGCAC ACGCCGCGTCGGCCGCGGGCGCCAGCGCCGCGACACCCGGCCCCGCGACGAGCGGCGTGAAGTTCGCCGCGCCGCCGTCC GGCGACCTGCAGTACGACACGTTCTACAACGGCATGCAGAACATGATCGGCACGATCCACTGGCGCACCGACGGGCACAC GTACGACCTGTCGGTGTCGATGCCCGTGCCGTTCGTGGGCCCGTTCACCTATCGCAGCGAAGGCCGCATCGATGCGTTCG GCGTCGCGCCCGACCGTTACGTCGAGAAGCGCGGCAAGCGGCCGGAAGACATCGCGATCTTCAACCGCGAGATCCGGCAA GTCGTGTTCACGCGCACGCCGAACAACGCGCCGCTGCCCGACGGCGTGCAGGACCGCTTCAGCATGCTGATGCAGTTGTC GGGGCTCGTGCGCGGCAATCCCGCCGCCTACAAGCCGGGCGTCACGCAGCAGTTCTTCGTGATCGACAACAACAGCGGCG AGACCTGGCCGATCACCGTGATCGGCGACGAGCAGGTGCAGACGCAGGCCGGCATCATCGCGGCGCGGCACTTCATGCGC CTGCCGCGCCGCGACGGCGACACGCGCCGCATCGACATGTGGCTCGCGCCGTCGCTCGGCTGGCTGCCCGCGCGACTCGT GCAGAGCGAGCCGAACGGGGCGCAGATCGAGCTGCTGTGGCACGGCCGCCTCGTCGCACCGAGCGTGCCTGCCGATGCCG CGCCGCCCGGCGGCGCAACGAACGCGCCTGCCGCCGCTCCGACACCCGATGCATCGCCTGCGCCGCCAGCGGAACCGGCG CAAGCGGCACCGCCCGCGACGATGCAACCACCGGCCTCGTCGACTGTCACACAGTGA
Upstream 100 bases:
>100_bases TTCGCGTCACGCATCGCGAACGCGCAGCGCATCCGACGGTCCGATTCCTGTGGCGCGCGCCGCGCGCCCGACGTCACCCA CGCGCCCCGATCCTGTTCCG
Downstream 100 bases:
>100_bases ACGCGAATGAATGCAGGCCAATCGGCAATTTCGACCGATTACAGATTTCCCGGAAATGGCCGATGACACTCTTTAACAAC TATTTCAGTCCACCGGCTCA
Product: hypothetical protein
Products: NA
Alternate protein names: Proline-Rich Signal Peptide Protein; Prolin-Rich Protein
Number of amino acids: Translated: 418; Mature: 417
Protein sequence:
>418_residues MPMQPADLRPTHAQPRRWLRVGVALVAVLVLHALAGFWLMRNRESFTPPPPADIPVQIELLKPQPIERQPAPPAPKPVER PAAPAAPKAAPPKPAQSHEPVLTSTQTAEHGEPPAAAASAASGTPGASGASAAHAASAAGASAATPGPATSGVKFAAPPS GDLQYDTFYNGMQNMIGTIHWRTDGHTYDLSVSMPVPFVGPFTYRSEGRIDAFGVAPDRYVEKRGKRPEDIAIFNREIRQ VVFTRTPNNAPLPDGVQDRFSMLMQLSGLVRGNPAAYKPGVTQQFFVIDNNSGETWPITVIGDEQVQTQAGIIAARHFMR LPRRDGDTRRIDMWLAPSLGWLPARLVQSEPNGAQIELLWHGRLVAPSVPADAAPPGGATNAPAAAPTPDASPAPPAEPA QAAPPATMQPPASSTVTQ
Sequences:
>Translated_418_residues MPMQPADLRPTHAQPRRWLRVGVALVAVLVLHALAGFWLMRNRESFTPPPPADIPVQIELLKPQPIERQPAPPAPKPVER PAAPAAPKAAPPKPAQSHEPVLTSTQTAEHGEPPAAAASAASGTPGASGASAAHAASAAGASAATPGPATSGVKFAAPPS GDLQYDTFYNGMQNMIGTIHWRTDGHTYDLSVSMPVPFVGPFTYRSEGRIDAFGVAPDRYVEKRGKRPEDIAIFNREIRQ VVFTRTPNNAPLPDGVQDRFSMLMQLSGLVRGNPAAYKPGVTQQFFVIDNNSGETWPITVIGDEQVQTQAGIIAARHFMR LPRRDGDTRRIDMWLAPSLGWLPARLVQSEPNGAQIELLWHGRLVAPSVPADAAPPGGATNAPAAAPTPDASPAPPAEPA QAAPPATMQPPASSTVTQ >Mature_417_residues PMQPADLRPTHAQPRRWLRVGVALVAVLVLHALAGFWLMRNRESFTPPPPADIPVQIELLKPQPIERQPAPPAPKPVERP AAPAAPKAAPPKPAQSHEPVLTSTQTAEHGEPPAAAASAASGTPGASGASAAHAASAAGASAATPGPATSGVKFAAPPSG DLQYDTFYNGMQNMIGTIHWRTDGHTYDLSVSMPVPFVGPFTYRSEGRIDAFGVAPDRYVEKRGKRPEDIAIFNREIRQV VFTRTPNNAPLPDGVQDRFSMLMQLSGLVRGNPAAYKPGVTQQFFVIDNNSGETWPITVIGDEQVQTQAGIIAARHFMRL PRRDGDTRRIDMWLAPSLGWLPARLVQSEPNGAQIELLWHGRLVAPSVPADAAPPGGATNAPAAAPTPDASPAPPAEPAQ AAPPATMQPPASSTVTQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 44209; Mature: 44078
Theoretical pI: Translated: 8.84; Mature: 8.84
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPMQPADLRPTHAQPRRWLRVGVALVAVLVLHALAGFWLMRNRESFTPPPPADIPVQIEL CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEE LKPQPIERQPAPPAPKPVERPAAPAAPKAAPPKPAQSHEPVLTSTQTAEHGEPPAAAASA ECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCHHHHHC ASGTPGASGASAAHAASAAGASAATPGPATSGVKFAAPPSGDLQYDTFYNGMQNMIGTIH CCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCEEHHHHHHHHHHHHEEEE WRTDGHTYDLSVSMPVPFVGPFTYRSEGRIDAFGVAPDRYVEKRGKRPEDIAIFNREIRQ EECCCEEEEEEEECCCCCCCCEEECCCCCEEEECCCHHHHHHHHCCCCCHHHHHHHHHHH VVFTRTPNNAPLPDGVQDRFSMLMQLSGLVRGNPAAYKPGVTQQFFVIDNNSGETWPITV EEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCEEEEEE IGDEQVQTQAGIIAARHFMRLPRRDGDTRRIDMWLAPSLGWLPARLVQSEPNGAQIELLW ECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCHHHHHHCCCCCCCEEEEEE HGRLVAPSVPADAAPPGGATNAPAAAPTPDASPAPPAEPAQAAPPATMQPPASSTVTQ CCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure PMQPADLRPTHAQPRRWLRVGVALVAVLVLHALAGFWLMRNRESFTPPPPADIPVQIEL CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEE LKPQPIERQPAPPAPKPVERPAAPAAPKAAPPKPAQSHEPVLTSTQTAEHGEPPAAAASA ECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCHHHHHC ASGTPGASGASAAHAASAAGASAATPGPATSGVKFAAPPSGDLQYDTFYNGMQNMIGTIH CCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCEEHHHHHHHHHHHHEEEE WRTDGHTYDLSVSMPVPFVGPFTYRSEGRIDAFGVAPDRYVEKRGKRPEDIAIFNREIRQ EECCCEEEEEEEECCCCCCCCEEECCCCCEEEECCCHHHHHHHHCCCCCHHHHHHHHHHH VVFTRTPNNAPLPDGVQDRFSMLMQLSGLVRGNPAAYKPGVTQQFFVIDNNSGETWPITV EEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCEEEEEE IGDEQVQTQAGIIAARHFMRLPRRDGDTRRIDMWLAPSLGWLPARLVQSEPNGAQIELLW ECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCHHHHHHCCCCCCCEEEEEE HGRLVAPSVPADAAPPGGATNAPAAAPTPDASPAPPAEPAQAAPPATMQPPASSTVTQ CCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA