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The map label for this gene is yfdE [H]

Identifier: 116690896

GI number: 116690896

Start: 3177335

End: 3178540

Strand: Reverse

Name: yfdE [H]

Synonym: Bcen2424_2876

Alternate gene names: 116690896

Gene position: 3178540-3177335 (Counterclockwise)

Preceding gene: 116690897

Following gene: 116690895

Centisome position: 91.24

GC content: 71.14

Gene sequence:

>1206_bases
ATGACGAACGAACGGTGCGCGCTGCCGCTGGCCGGCGTGAAGGTGCTCGATTTTTCGCGCGTGCTCGCGGGCCCGTGGTG
CGCGATGGTGCTCGCCGATTTCGGTGCGGAAGTGATCAAGGTCGAGCATCCGGCGCGCGGCGACGATACGCGCGACTGGG
GGCTGCGGATCGGTGACACCGAAACCACCTATTTCAACAGCGTGAACCGCAGCAAGCGGTCGATCTGCGTCGACCTGCAG
ACGGAAGCCGGCCGGCGCATCGCGCGCGAGCTGGCCGCGCAGGCCGACGTGCTGATCCACAACTTCAAGTGCGGCGGCGC
GGAGAAACTCGGGCTCGGCTACGACGCGCTGGCCGAACTGAATCCGCGCCTCGTGCACTGCGCGATTTCCGGCTACGACC
GGTCGGGCGCCGAAGCCGCGCGGCCCGGCTACGACCTCGTCGTGCAGGGCGAGGCGGGGCTGATGGCGCTGAACGGCGAG
GCCGGCCAGCCGCCGCTGAAGTTCGGCGTCGCGGCGGTCGACCTGTTCACCGGCATGTATTCGGCGCAGGCGATCCTCGC
CGCGTTGTACGAACGCCATGCGACCGGGCGCGGGCGGCGCATCGAGATGGCGCTGTTCGATTGCGGGCTGATGATCACCG
CGTACTACGGGCTCGACGCGCTGCTGATGGGCGAGGACCCGCCGCGCTACGGCAACGCGCATCCGTCGATCGTGCCGTAC
GGCGTGTTCGACGCGGCCGACGGCCCGCTCGTGATCACGGTCGGCAACAACACGCAGTTCGCGCGCTTCTGCGACGCGAT
CGAGCGGCCCGATCTCGCGGCCGACGAACGCTACAAGACCAACCTCGGCCGCTCGCAGAATCGTGCCGACCTGCTGCCCG
AGATTCGCGGCGAACTCGCGCGGCGTTCGCGCGCGACGCTGCTGGCGGCGCTCGCCGACGCGGGCATTCCGTGCGGCGAA
GTGCTCGGATTGCACGAAGCGCTGACGTCCGAACGCGCCACCCGCGCCGGGCTCGTCACGCGGCAGCCGCATCCGGCCGC
GGGCGCGGTCGACGTGCTCGCGCCGCCGTACCGCTTCGACGGCGCGCGGCTGCCGGTGCGCGGTGCGCCGCCGGTGCTCG
GCGCCGATACCGCTGCGGTGCTCGGCGGCTGGCTCGGGATGTCGGCGGAGGACGTTGCGCGGCTGCGGGCGGATCGCGTC
GTGTAA

Upstream 100 bases:

>100_bases
GATGATCGATCACCAGCTGGGCGACGAGGATCACCATCTCGCGCGCTACATCGCGCTGTCGAAACAGTAAGGGCGCACGG
CGCGAATGGAGGAGACAACG

Downstream 100 bases:

>100_bases
ATCGCTTGTTCCGCCGCGGCGCGGGCGGTGAGTCGACGCGCGCCGACCATTCCACAAAACACCGCTCGCAATGATGAGCC
GGAAATGGAGACACCATGGA

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 401; Mature: 400

Protein sequence:

>401_residues
MTNERCALPLAGVKVLDFSRVLAGPWCAMVLADFGAEVIKVEHPARGDDTRDWGLRIGDTETTYFNSVNRSKRSICVDLQ
TEAGRRIARELAAQADVLIHNFKCGGAEKLGLGYDALAELNPRLVHCAISGYDRSGAEAARPGYDLVVQGEAGLMALNGE
AGQPPLKFGVAAVDLFTGMYSAQAILAALYERHATGRGRRIEMALFDCGLMITAYYGLDALLMGEDPPRYGNAHPSIVPY
GVFDAADGPLVITVGNNTQFARFCDAIERPDLAADERYKTNLGRSQNRADLLPEIRGELARRSRATLLAALADAGIPCGE
VLGLHEALTSERATRAGLVTRQPHPAAGAVDVLAPPYRFDGARLPVRGAPPVLGADTAAVLGGWLGMSAEDVARLRADRV
V

Sequences:

>Translated_401_residues
MTNERCALPLAGVKVLDFSRVLAGPWCAMVLADFGAEVIKVEHPARGDDTRDWGLRIGDTETTYFNSVNRSKRSICVDLQ
TEAGRRIARELAAQADVLIHNFKCGGAEKLGLGYDALAELNPRLVHCAISGYDRSGAEAARPGYDLVVQGEAGLMALNGE
AGQPPLKFGVAAVDLFTGMYSAQAILAALYERHATGRGRRIEMALFDCGLMITAYYGLDALLMGEDPPRYGNAHPSIVPY
GVFDAADGPLVITVGNNTQFARFCDAIERPDLAADERYKTNLGRSQNRADLLPEIRGELARRSRATLLAALADAGIPCGE
VLGLHEALTSERATRAGLVTRQPHPAAGAVDVLAPPYRFDGARLPVRGAPPVLGADTAAVLGGWLGMSAEDVARLRADRV
V
>Mature_400_residues
TNERCALPLAGVKVLDFSRVLAGPWCAMVLADFGAEVIKVEHPARGDDTRDWGLRIGDTETTYFNSVNRSKRSICVDLQT
EAGRRIARELAAQADVLIHNFKCGGAEKLGLGYDALAELNPRLVHCAISGYDRSGAEAARPGYDLVVQGEAGLMALNGEA
GQPPLKFGVAAVDLFTGMYSAQAILAALYERHATGRGRRIEMALFDCGLMITAYYGLDALLMGEDPPRYGNAHPSIVPYG
VFDAADGPLVITVGNNTQFARFCDAIERPDLAADERYKTNLGRSQNRADLLPEIRGELARRSRATLLAALADAGIPCGEV
LGLHEALTSERATRAGLVTRQPHPAAGAVDVLAPPYRFDGARLPVRGAPPVLGADTAAVLGGWLGMSAEDVARLRADRVV

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=373, Percent_Identity=38.0697050938338, Blast_Score=284, Evalue=1e-76,
Organism=Homo sapiens, GI300863124, Length=399, Percent_Identity=36.0902255639098, Blast_Score=273, Evalue=3e-73,
Organism=Homo sapiens, GI300863126, Length=373, Percent_Identity=34.8525469168901, Blast_Score=232, Evalue=4e-61,
Organism=Homo sapiens, GI13376042, Length=399, Percent_Identity=32.5814536340852, Blast_Score=226, Evalue=4e-59,
Organism=Homo sapiens, GI266456254, Length=411, Percent_Identity=26.2773722627737, Blast_Score=122, Evalue=4e-28,
Organism=Homo sapiens, GI42794625, Length=411, Percent_Identity=26.2773722627737, Blast_Score=122, Evalue=5e-28,
Organism=Homo sapiens, GI266458393, Length=260, Percent_Identity=30.3846153846154, Blast_Score=113, Evalue=4e-25,
Organism=Homo sapiens, GI266458397, Length=260, Percent_Identity=30.3846153846154, Blast_Score=112, Evalue=5e-25,
Organism=Homo sapiens, GI42822893, Length=140, Percent_Identity=37.1428571428571, Blast_Score=90, Evalue=4e-18,
Organism=Homo sapiens, GI266458395, Length=140, Percent_Identity=37.1428571428571, Blast_Score=90, Evalue=4e-18,
Organism=Escherichia coli, GI87082093, Length=328, Percent_Identity=35.6707317073171, Blast_Score=235, Evalue=4e-63,
Organism=Escherichia coli, GI1788717, Length=417, Percent_Identity=30.9352517985612, Blast_Score=186, Evalue=3e-48,
Organism=Escherichia coli, GI1786222, Length=405, Percent_Identity=25.9259259259259, Blast_Score=101, Evalue=1e-22,
Organism=Caenorhabditis elegans, GI32564160, Length=206, Percent_Identity=28.6407766990291, Blast_Score=76, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI115535051, Length=204, Percent_Identity=27.4509803921569, Blast_Score=72, Evalue=5e-13,
Organism=Drosophila melanogaster, GI24648431, Length=395, Percent_Identity=40.5063291139241, Blast_Score=301, Evalue=7e-82,
Organism=Drosophila melanogaster, GI24585488, Length=210, Percent_Identity=28.0952380952381, Blast_Score=99, Evalue=4e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 42821; Mature: 42690

Theoretical pI: Translated: 5.95; Mature: 5.95

Prosite motif: PS00213 LIPOCALIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNERCALPLAGVKVLDFSRVLAGPWCAMVLADFGAEVIKVEHPARGDDTRDWGLRIGDT
CCCCCCCCCCCCEEHHHHHHHHHCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCEEECCC
ETTYFNSVNRSKRSICVDLQTEAGRRIARELAAQADVLIHNFKCGGAEKLGLGYDALAEL
CCHHHHCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCHHHHHHC
NPRLVHCAISGYDRSGAEAARPGYDLVVQGEAGLMALNGEAGQPPLKFGVAAVDLFTGMY
CCEEEEEEEECCCCCCCCCCCCCCEEEEECCCCEEEECCCCCCCCHHHHHHHHHHHHHHH
SAQAILAALYERHATGRGRRIEMALFDCGLMITAYYGLDALLMGEDPPRYGNAHPSIVPY
HHHHHHHHHHHHHCCCCCCEEEEEEHHCHHHHHHHHCCEEEEECCCCCCCCCCCCCEEEE
GVFDAADGPLVITVGNNTQFARFCDAIERPDLAADERYKTNLGRSQNRADLLPEIRGELA
EEEECCCCCEEEEECCCCHHHHHHHHHCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHH
RRSRATLLAALADAGIPCGEVLGLHEALTSERATRAGLVTRQPHPAAGAVDVLAPPYRFD
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHCCCCCCCC
GARLPVRGAPPVLGADTAAVLGGWLGMSAEDVARLRADRVV
CCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHCCC
>Mature Secondary Structure 
TNERCALPLAGVKVLDFSRVLAGPWCAMVLADFGAEVIKVEHPARGDDTRDWGLRIGDT
CCCCCCCCCCCEEHHHHHHHHHCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCEEECCC
ETTYFNSVNRSKRSICVDLQTEAGRRIARELAAQADVLIHNFKCGGAEKLGLGYDALAEL
CCHHHHCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCHHHHHHC
NPRLVHCAISGYDRSGAEAARPGYDLVVQGEAGLMALNGEAGQPPLKFGVAAVDLFTGMY
CCEEEEEEEECCCCCCCCCCCCCCEEEEECCCCEEEECCCCCCCCHHHHHHHHHHHHHHH
SAQAILAALYERHATGRGRRIEMALFDCGLMITAYYGLDALLMGEDPPRYGNAHPSIVPY
HHHHHHHHHHHHHCCCCCCEEEEEEHHCHHHHHHHHCCEEEEECCCCCCCCCCCCCEEEE
GVFDAADGPLVITVGNNTQFARFCDAIERPDLAADERYKTNLGRSQNRADLLPEIRGELA
EEEECCCCCEEEEECCCCHHHHHHHHHCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHH
RRSRATLLAALADAGIPCGEVLGLHEALTSERATRAGLVTRQPHPAAGAVDVLAPPYRFD
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHCCCCCCCC
GARLPVRGAPPVLGADTAAVLGGWLGMSAEDVARLRADRVV
CCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]