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The map label for this gene is secB

Identifier: 116690874

GI number: 116690874

Start: 3153664

End: 3154158

Strand: Reverse

Name: secB

Synonym: Bcen2424_2854

Alternate gene names: 116690874

Gene position: 3154158-3153664 (Counterclockwise)

Preceding gene: 116690875

Following gene: 116690873

Centisome position: 90.54

GC content: 61.62

Gene sequence:

>495_bases
ATGTCCGACGTCGAAAACCAACCGTTCTTCAACATCCAGCGCGTCTACCTGAAGGATATGTCGCTCGAGCAGCCGAATTC
GCCGGCGATCTTCCTCGAGCAGGACATGCCGTCGGTTGAAGTCGAAGTCGACGTCAAGGCCGACCGTCTCGCGGAAAGCG
TGTTCGAAGTCGTCGTGTCGGGTACCGTCACCGCGAAGGTGAAGGACAAGGTCGCATTCCTGATCGAAGCGAAGCAGGCC
GGCATTTTCGACATCCGCAACATTCCGGACGAACAACTCGATCCGCTCGTCGGCATCGCATGCCCGACGATCCTGTTCCC
GTACCTGCGCTCGAACATCGCCGACGCGATCACGCGCGCCGGCTTCCCGCCGATCCACCTCGCGGAAATCAACTTCCAGG
CGCTGTACGAGCAGCGTCTCGCGCAGCTTCAGCAGCAAGCCGGTGCCGCAGCAGGCGCACCGAACGGCGCGCCGAATGGC
ACGACGCTGAACTGA

Upstream 100 bases:

>100_bases
AGAATGGCCGCCGGCCGCGCCGCGGGTCGGGCGCGCAGGATTCATCCGTGGCGGCCGGCGAACAGCCGGGCCGCCCCGTC
ACCACTTTTAGGGAAACACC

Downstream 100 bases:

>100_bases
CGTTTCACTCCGGACCGGTGCTGGGTATGAAAGTAGCCGTTCTCGGCGCCGGTGCCTGGGGCACCGCGCTCGCGGGCCAT
CTGGCCGCGCGGCACGATAC

Product: preprotein translocase subunit SecB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 164; Mature: 163

Protein sequence:

>164_residues
MSDVENQPFFNIQRVYLKDMSLEQPNSPAIFLEQDMPSVEVEVDVKADRLAESVFEVVVSGTVTAKVKDKVAFLIEAKQA
GIFDIRNIPDEQLDPLVGIACPTILFPYLRSNIADAITRAGFPPIHLAEINFQALYEQRLAQLQQQAGAAAGAPNGAPNG
TTLN

Sequences:

>Translated_164_residues
MSDVENQPFFNIQRVYLKDMSLEQPNSPAIFLEQDMPSVEVEVDVKADRLAESVFEVVVSGTVTAKVKDKVAFLIEAKQA
GIFDIRNIPDEQLDPLVGIACPTILFPYLRSNIADAITRAGFPPIHLAEINFQALYEQRLAQLQQQAGAAAGAPNGAPNG
TTLN
>Mature_163_residues
SDVENQPFFNIQRVYLKDMSLEQPNSPAIFLEQDMPSVEVEVDVKADRLAESVFEVVVSGTVTAKVKDKVAFLIEAKQAG
IFDIRNIPDEQLDPLVGIACPTILFPYLRSNIADAITRAGFPPIHLAEINFQALYEQRLAQLQQQAGAAAGAPNGAPNGT
TLN

Specific function: One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its r

COG id: COG1952

COG function: function code U; Preprotein translocase subunit SecB

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secB family

Homologues:

Organism=Escherichia coli, GI1790038, Length=139, Percent_Identity=44.6043165467626, Blast_Score=128, Evalue=2e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SECB_BURCA (Q1BTB4)

Other databases:

- EMBL:   CP000378
- RefSeq:   YP_622114.1
- ProteinModelPortal:   Q1BTB4
- SMR:   Q1BTB4
- STRING:   Q1BTB4
- GeneID:   4093647
- GenomeReviews:   CP000378_GR
- KEGG:   bcn:Bcen_2240
- eggNOG:   COG1952
- HOGENOM:   HBG294212
- OMA:   GFPPLMI
- ProtClustDB:   PRK05751
- BioCyc:   BCEN331271:BCEN_2240-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00821
- InterPro:   IPR003708
- Gene3D:   G3DSA:3.10.420.10
- PRINTS:   PR01594
- TIGRFAMs:   TIGR00809

Pfam domain/function: PF02556 SecB; SSF54611 SecB

EC number: NA

Molecular weight: Translated: 17898; Mature: 17766

Theoretical pI: Translated: 4.23; Mature: 4.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDVENQPFFNIQRVYLKDMSLEQPNSPAIFLEQDMPSVEVEVDVKADRLAESVFEVVVS
CCCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCEEEEEECCHHHHHHHHHHHHHC
GTVTAKVKDKVAFLIEAKQAGIFDIRNIPDEQLDPLVGIACPTILFPYLRSNIADAITRA
CCEEEEHHHHEEEEEECCCCCEEECCCCCHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHC
GFPPIHLAEINFQALYEQRLAQLQQQAGAAAGAPNGAPNGTTLN
CCCCEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SDVENQPFFNIQRVYLKDMSLEQPNSPAIFLEQDMPSVEVEVDVKADRLAESVFEVVVS
CCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCEEEEEECCHHHHHHHHHHHHHC
GTVTAKVKDKVAFLIEAKQAGIFDIRNIPDEQLDPLVGIACPTILFPYLRSNIADAITRA
CCEEEEHHHHEEEEEECCCCCEEECCCCCHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHC
GFPPIHLAEINFQALYEQRLAQLQQQAGAAAGAPNGAPNGTTLN
CCCCEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA