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The map label for this gene is ygbL [C]

Identifier: 116690771

GI number: 116690771

Start: 3047438

End: 3048211

Strand: Reverse

Name: ygbL [C]

Synonym: Bcen2424_2751

Alternate gene names: 116690771

Gene position: 3048211-3047438 (Counterclockwise)

Preceding gene: 116690772

Following gene: 116690768

Centisome position: 87.49

GC content: 65.25

Gene sequence:

>774_bases
ATGCAACGTGTACCGAACCAGCCGTTCACGCGTCCCGCGCGCTTCTCCGAAGCCGAATGGCAGGCGCGGGTGCAGCTCGC
GGCCGCCTACCGCATCTTCGATCATCTCGGCTGGACCGAGCTGATCTACAACCATATTTCGCTGCGCGTGCCGGGCGAGG
ACGGACATTTCCTGATCAACCCGTTCGGGCTCCATTACCGCGAGGTGTGCGCGTCGAATCTCGTGAAGATCGACATCGAC
GGCAACGTGATCGGCCACTCCGACTGGCCGATCAATCCGGCCGGTTTCACGTTCCACGGCGCGATCCATGCGGCGCTGCC
CGATGCGCACTGCGTGATGCACGTGCACACGACGCCGACGATGGCCGTGTGCTGTTCGCGCGACGGGCTGTCGTTCTCGA
ATTTCTATTCGGCGCAGCTGTACGGGAAGATCGCGTATCACGACTTCGAAGGCATCACCGTGCATCTCGAGGAAGGTCGG
CGCATCGTCGAGAGCGCGGGCGGGCGGCCCGTGCTGCTGCTGCGCAACCACGGCCCCGTGACGATCGGCGCGACGCTCGC
GCAGACGTTTTCGCTGATGTGGCTGCTCAACCGCGCGTGCGAGGTGCAGATCGCGACGCATGCGATCGGCGCGGCGCTGC
CGATTGCGCCGCCCGTGCTCGAAGCGTGCGTGCGCGATTCGCTGAATTTCGATCCGAAGCATGGCGCGGGACAGGACGCG
TTCGACGCGCTGCAGCGTATCGTCGACCGGATCGATCCGGGCTACCGCGCGTGA

Upstream 100 bases:

>100_bases
TGCGTGATACGCACCTCGCACCGCGCCCGGCGCCTGCACACGATGGACGATGCGCACCGCCATTCGCCCGGGGCCGCGCG
CCCCGCAACCGGGGTTCCCC

Downstream 100 bases:

>100_bases
CGCGGGCGGCGCGCCCGATGAGTGCGCCCGACTAGAACCGGTAGCCGACACCGGCCTGGATCACATCGGTATCGCGGTCG
TAGCGCGTGACCACGCGGTT

Product: aldolase II superfamily protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 257; Mature: 257

Protein sequence:

>257_residues
MQRVPNQPFTRPARFSEAEWQARVQLAAAYRIFDHLGWTELIYNHISLRVPGEDGHFLINPFGLHYREVCASNLVKIDID
GNVIGHSDWPINPAGFTFHGAIHAALPDAHCVMHVHTTPTMAVCCSRDGLSFSNFYSAQLYGKIAYHDFEGITVHLEEGR
RIVESAGGRPVLLLRNHGPVTIGATLAQTFSLMWLLNRACEVQIATHAIGAALPIAPPVLEACVRDSLNFDPKHGAGQDA
FDALQRIVDRIDPGYRA

Sequences:

>Translated_257_residues
MQRVPNQPFTRPARFSEAEWQARVQLAAAYRIFDHLGWTELIYNHISLRVPGEDGHFLINPFGLHYREVCASNLVKIDID
GNVIGHSDWPINPAGFTFHGAIHAALPDAHCVMHVHTTPTMAVCCSRDGLSFSNFYSAQLYGKIAYHDFEGITVHLEEGR
RIVESAGGRPVLLLRNHGPVTIGATLAQTFSLMWLLNRACEVQIATHAIGAALPIAPPVLEACVRDSLNFDPKHGAGQDA
FDALQRIVDRIDPGYRA
>Mature_257_residues
MQRVPNQPFTRPARFSEAEWQARVQLAAAYRIFDHLGWTELIYNHISLRVPGEDGHFLINPFGLHYREVCASNLVKIDID
GNVIGHSDWPINPAGFTFHGAIHAALPDAHCVMHVHTTPTMAVCCSRDGLSFSNFYSAQLYGKIAYHDFEGITVHLEEGR
RIVESAGGRPVLLLRNHGPVTIGATLAQTFSLMWLLNRACEVQIATHAIGAALPIAPPVLEACVRDSLNFDPKHGAGQDA
FDALQRIVDRIDPGYRA

Specific function: Unknown

COG id: COG0235

COG function: function code G; Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the aldolase class II family [H]

Homologues:

Organism=Homo sapiens, GI29826323, Length=257, Percent_Identity=40.0778210116732, Blast_Score=171, Evalue=7e-43,
Organism=Homo sapiens, GI29826325, Length=257, Percent_Identity=40.0778210116732, Blast_Score=171, Evalue=8e-43,
Organism=Homo sapiens, GI29826321, Length=257, Percent_Identity=40.0778210116732, Blast_Score=170, Evalue=1e-42,
Organism=Homo sapiens, GI29826319, Length=256, Percent_Identity=40.234375, Blast_Score=170, Evalue=1e-42,
Organism=Homo sapiens, GI89276787, Length=260, Percent_Identity=34.2307692307692, Blast_Score=138, Evalue=5e-33,
Organism=Homo sapiens, GI9257190, Length=260, Percent_Identity=34.2307692307692, Blast_Score=138, Evalue=5e-33,
Organism=Homo sapiens, GI297307160, Length=260, Percent_Identity=34.2307692307692, Blast_Score=138, Evalue=5e-33,
Organism=Homo sapiens, GI297307158, Length=260, Percent_Identity=34.2307692307692, Blast_Score=138, Evalue=6e-33,
Organism=Homo sapiens, GI9257192, Length=260, Percent_Identity=34.2307692307692, Blast_Score=138, Evalue=6e-33,
Organism=Homo sapiens, GI9943848, Length=204, Percent_Identity=36.2745098039216, Blast_Score=134, Evalue=9e-32,
Organism=Homo sapiens, GI9951927, Length=204, Percent_Identity=36.2745098039216, Blast_Score=134, Evalue=1e-31,
Organism=Homo sapiens, GI62912453, Length=204, Percent_Identity=36.2745098039216, Blast_Score=134, Evalue=1e-31,
Organism=Caenorhabditis elegans, GI115533216, Length=194, Percent_Identity=38.659793814433, Blast_Score=144, Evalue=4e-35,
Organism=Caenorhabditis elegans, GI115533218, Length=194, Percent_Identity=38.659793814433, Blast_Score=143, Evalue=1e-34,
Organism=Caenorhabditis elegans, GI71989550, Length=220, Percent_Identity=33.6363636363636, Blast_Score=120, Evalue=6e-28,
Organism=Caenorhabditis elegans, GI71989555, Length=220, Percent_Identity=33.6363636363636, Blast_Score=120, Evalue=6e-28,
Organism=Caenorhabditis elegans, GI71989544, Length=220, Percent_Identity=33.6363636363636, Blast_Score=120, Evalue=7e-28,
Organism=Caenorhabditis elegans, GI71989560, Length=220, Percent_Identity=33.6363636363636, Blast_Score=120, Evalue=7e-28,
Organism=Caenorhabditis elegans, GI71989541, Length=220, Percent_Identity=33.6363636363636, Blast_Score=120, Evalue=7e-28,
Organism=Drosophila melanogaster, GI281363755, Length=199, Percent_Identity=32.6633165829146, Blast_Score=117, Evalue=6e-27,
Organism=Drosophila melanogaster, GI281363751, Length=199, Percent_Identity=32.6633165829146, Blast_Score=117, Evalue=6e-27,
Organism=Drosophila melanogaster, GI24655690, Length=199, Percent_Identity=32.6633165829146, Blast_Score=117, Evalue=6e-27,
Organism=Drosophila melanogaster, GI24655685, Length=199, Percent_Identity=32.6633165829146, Blast_Score=117, Evalue=8e-27,
Organism=Drosophila melanogaster, GI281363763, Length=199, Percent_Identity=32.6633165829146, Blast_Score=117, Evalue=1e-26,
Organism=Drosophila melanogaster, GI281363757, Length=199, Percent_Identity=32.6633165829146, Blast_Score=117, Evalue=1e-26,
Organism=Drosophila melanogaster, GI17136738, Length=199, Percent_Identity=32.6633165829146, Blast_Score=117, Evalue=1e-26,
Organism=Drosophila melanogaster, GI281363761, Length=199, Percent_Identity=32.6633165829146, Blast_Score=117, Evalue=1e-26,
Organism=Drosophila melanogaster, GI281363759, Length=199, Percent_Identity=32.6633165829146, Blast_Score=117, Evalue=1e-26,
Organism=Drosophila melanogaster, GI281363753, Length=199, Percent_Identity=32.6633165829146, Blast_Score=117, Evalue=1e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001303 [H]

Pfam domain/function: PF00596 Aldolase_II [H]

EC number: NA

Molecular weight: Translated: 28423; Mature: 28423

Theoretical pI: Translated: 6.79; Mature: 6.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQRVPNQPFTRPARFSEAEWQARVQLAAAYRIFDHLGWTELIYNHISLRVPGEDGHFLIN
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHEEEEECCCCCCEEEC
PFGLHYREVCASNLVKIDIDGNVIGHSDWPINPAGFTFHGAIHAALPDAHCVMHVHTTPT
CCCHHHHHHHHCCCEEEEECCCEEECCCCCCCCCCEEEECEEEECCCCCEEEEEEECCCC
MAVCCSRDGLSFSNFYSAQLYGKIAYHDFEGITVHLEEGRRIVESAGGRPVLLLRNHGPV
EEEEECCCCCCHHHEEEEHEEEEEEEECCCCEEEEEHHCCHHHHHCCCCEEEEEECCCCE
TIGATLAQTFSLMWLLNRACEVQIATHAIGAALPIAPPVLEACVRDSLNFDPKHGAGQDA
EEHHHHHHHHHHHHHHHHHHEEEEEHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHH
FDALQRIVDRIDPGYRA
HHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MQRVPNQPFTRPARFSEAEWQARVQLAAAYRIFDHLGWTELIYNHISLRVPGEDGHFLIN
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHEEEEECCCCCCEEEC
PFGLHYREVCASNLVKIDIDGNVIGHSDWPINPAGFTFHGAIHAALPDAHCVMHVHTTPT
CCCHHHHHHHHCCCEEEEECCCEEECCCCCCCCCCEEEECEEEECCCCCEEEEEEECCCC
MAVCCSRDGLSFSNFYSAQLYGKIAYHDFEGITVHLEEGRRIVESAGGRPVLLLRNHGPV
EEEEECCCCCCHHHEEEEHEEEEEEEECCCCEEEEEHHCCHHHHHCCCCEEEEEECCCCE
TIGATLAQTFSLMWLLNRACEVQIATHAIGAALPIAPPVLEACVRDSLNFDPKHGAGQDA
EEHHHHHHHHHHHHHHHHHHEEEEEHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHH
FDALQRIVDRIDPGYRA
HHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11259647 [H]