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The map label for this gene is ydcN [C]

Identifier: 116690710

GI number: 116690710

Start: 2978856

End: 2979542

Strand: Reverse

Name: ydcN [C]

Synonym: Bcen2424_2690

Alternate gene names: 116690710

Gene position: 2979542-2978856 (Counterclockwise)

Preceding gene: 116690711

Following gene: 116690709

Centisome position: 85.52

GC content: 71.47

Gene sequence:

>687_bases
ATGTCTTCATCCCTGGCGCTCGTGCGCGACGTGTCTTCCTTCGAGTCCGGCAATGCCGCCGACGGGCGCGGCTCCGCGTC
GCTCGACGTCCTCGAGCAGGTCGTCGGCGTGAATCTCGCGCGCTTGCGCGCCGAGCGGCAACTGTCGCTCGATGCGCTCG
CGCGGCTGTCCGGCGTGTCGCGCGCGATGCTCGCGCAGATCGAATCGGCGCGCAGCGTGCCGTCGATCAAGGTGCTCTGC
AAGATCGCGGCGGCACTGAAGGTGTCGGTCGCCGCGTTCCTGCGGCGCCATGCGGTGAACGGCTTCGAGCATCTGGCGGC
CGAGCGCGCGTCGCGCGTGGTCAGCTCGAACGGCCGTTTCTCGGCACGTGCGCTGTACCCGGAAGGCGAGCCGGCCGCGG
CCGAATTCCACGAGCTGCGGATCGCACCGCTGCATACGGAGCCCGGCGCGCGCCGCGCGCCCGGCACGACGGTCAACCTG
GTCGTCAGCGAAGGCACGCTCGAAGTCAGCGTGCACGACCGCCGCCAGTTGCTCGCGACCGGCGACGCGATCGTGTTCGA
CGCCGACCAGCCGTACAGCCTGCGCAATCCGGGCGACAGCGAAGCGCGCGCGTTCCGCGTGACAGTGAGCCCCGAGGTGC
CGCCGCGCTGGCTCGTGCCCGACGCGGCGCACGCCGCCGTCAACTGA

Upstream 100 bases:

>100_bases
CGGGTGATAGCGTCTCGATACGCGCCAATGACCGGCGCAACCCGATTCCGGTTCCGGCTTACCCCTACGCAGGGCCGCGC
AGCGGCCCGGAGGCAATGCT

Downstream 100 bases:

>100_bases
TCGCGCGGGCCGCGCGGCGCGACTGCGTTCCCGGATGGTCGCGGGATCGCGGGATCGCCCGCCGGCCGTTCGGGCGATCC
GGTTAGACAGGGTCGTCAGT

Product: XRE family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator XRE Family; XRE Family Transcriptional Regulator; Transcriptional Regulatory Protein; Cro/CI Family Transcriptional Regulator; Helix-Turn-Helix Domain-Containing Protein; HTH-Type Transcriptional Regulator; Helix-Turn-Helix Domain Protein; Transcription Regulator Protein; Cupin 2 Conserved Barrel Domain-Containing Protein; HTH-Type Transcriptional Regulator YdcN; Cupin 2 Domain-Containing Protein; Hth-Type Transcriptional Regulator; Transcriptional Regulator With Cupin 2 Conserved Barrel; Transcriptional Regulator HTH_3 Family Protein; Transcriptional Regulator HTH_3 Family; Transcriptional Regulator Xre Family; Transcriptional Regulator XRE; Transcriptional Regulator XRE Family With Cupin Sensor

Number of amino acids: Translated: 228; Mature: 227

Protein sequence:

>228_residues
MSSSLALVRDVSSFESGNAADGRGSASLDVLEQVVGVNLARLRAERQLSLDALARLSGVSRAMLAQIESARSVPSIKVLC
KIAAALKVSVAAFLRRHAVNGFEHLAAERASRVVSSNGRFSARALYPEGEPAAAEFHELRIAPLHTEPGARRAPGTTVNL
VVSEGTLEVSVHDRRQLLATGDAIVFDADQPYSLRNPGDSEARAFRVTVSPEVPPRWLVPDAAHAAVN

Sequences:

>Translated_228_residues
MSSSLALVRDVSSFESGNAADGRGSASLDVLEQVVGVNLARLRAERQLSLDALARLSGVSRAMLAQIESARSVPSIKVLC
KIAAALKVSVAAFLRRHAVNGFEHLAAERASRVVSSNGRFSARALYPEGEPAAAEFHELRIAPLHTEPGARRAPGTTVNL
VVSEGTLEVSVHDRRQLLATGDAIVFDADQPYSLRNPGDSEARAFRVTVSPEVPPRWLVPDAAHAAVN
>Mature_227_residues
SSSLALVRDVSSFESGNAADGRGSASLDVLEQVVGVNLARLRAERQLSLDALARLSGVSRAMLAQIESARSVPSIKVLCK
IAAALKVSVAAFLRRHAVNGFEHLAAERASRVVSSNGRFSARALYPEGEPAAAEFHELRIAPLHTEPGARRAPGTTVNLV
VSEGTLEVSVHDRRQLLATGDAIVFDADQPYSLRNPGDSEARAFRVTVSPEVPPRWLVPDAAHAAVN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787704, Length=172, Percent_Identity=27.906976744186, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24247; Mature: 24115

Theoretical pI: Translated: 8.53; Mature: 8.53

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSSLALVRDVSSFESGNAADGRGSASLDVLEQVVGVNLARLRAERQLSLDALARLSGVS
CCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
RAMLAQIESARSVPSIKVLCKIAAALKVSVAAFLRRHAVNGFEHLAAERASRVVSSNGRF
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCE
SARALYPEGEPAAAEFHELRIAPLHTEPGARRAPGTTVNLVVSEGTLEVSVHDRRQLLAT
EEEEECCCCCCCHHHHHHEEEEEECCCCCCCCCCCCEEEEEEECCEEEEEECCHHHHHCC
GDAIVFDADQPYSLRNPGDSEARAFRVTVSPEVPPRWLVPDAAHAAVN
CCEEEEECCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCHHHHCCC
>Mature Secondary Structure 
SSSLALVRDVSSFESGNAADGRGSASLDVLEQVVGVNLARLRAERQLSLDALARLSGVS
CCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
RAMLAQIESARSVPSIKVLCKIAAALKVSVAAFLRRHAVNGFEHLAAERASRVVSSNGRF
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCE
SARALYPEGEPAAAEFHELRIAPLHTEPGARRAPGTTVNLVVSEGTLEVSVHDRRQLLAT
EEEEECCCCCCCHHHHHHEEEEEECCCCCCCCCCCCEEEEEEECCEEEEEECCHHHHHCC
GDAIVFDADQPYSLRNPGDSEARAFRVTVSPEVPPRWLVPDAAHAAVN
CCEEEEECCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA