| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
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The map label for this gene is 116690641
Identifier: 116690641
GI number: 116690641
Start: 2903965
End: 2905104
Strand: Direct
Name: 116690641
Synonym: Bcen2424_2621
Alternate gene names: NA
Gene position: 2903965-2905104 (Clockwise)
Preceding gene: 116690640
Following gene: 116690651
Centisome position: 83.35
GC content: 69.12
Gene sequence:
>1140_bases ATGCAGACACAACAACACGCACCTTCCCGCAGCCGGCTGCGCATGCTGCGCACCGCGCAGGTCGCGATCGCCGGCGCCGC GCTCGCGCTGCTCGCCGCATGCGGCGGCGGTGACGACAACAACGGCAGCAGCGCGTCGAACACGCCGCCGTCGGGCGTGA AGATGCAGGTCGTGTCGTTCGGCGACAGCCTGTCCGACGTCGGCACCTACTCGCAGATCAAGCTCGGCTTCGGCGGCGGC CGCTTCACGACCAACCCGGGCCAGGTCTGGACGCAGGACGTCGCGCAGTACTACGGCGACACGCTGCAGCCCGCGAACCA GGGCGGCTTCGGCATTCCGCTGCAGGCCACCGGCGGCCTCGGCTACGCGCAGGGCGGCTCGCGCGTGACGCTGCAGCCGG GCATCGGCCATGCGGACGCCAGCGTGCCGAACCCCGACTACGCACAGGCGACCACCACGCCGATCGCGGACCAGGTCAAG CAGTACCTGACGCAGCACGGCAGCTTCAACGCCGGCCAGATCGTGCTGATCAACGGCGGCGCGAACGACATCTTCTACCA GGCCCAGGTCGCACAGGCGCAAGGCAACACGCCGGCCGCGCAGCTCGCGGCCGCGCAGGCGATCGGCCTGGCCGCGCAGC AGCTCGGCGGGATCGTCCAGCAGATCGTCGCGGCAGGCGCGACGCACGTGTTCGTCTCGAACGTGCCGGACATCGGCGGC ACGCCGCTCGCGCTGCAGGGCGGCACGCAGGCCGCGTTCACGCAACTGTCGGGGCTGTTCAACAAGACGCTGGTCGGCAC GCTCGCCGCGCTGAAGGTCGACCCGACGAAGTATGTGGTGGTCGATGCGTTCACGTGGCAGGACGGCATCGCGGCCAACT ACCAGGCGAACGGCTTCAGCGTGTCGAATACCGACACCGCGTGCAACCTGAAGGCGATGGTCCAGGCCGCCACGCAGTAC GGCGTCGCGAACGCGACCGCGTTCGGCTCGTCGCTGTTCTGCTCGCCGCAGACCTACACGGTCGCGAACGCGGACCAGAC CTACATGTTCGCCGATACGGTCCACCCGACGACGCACCTGCATGCGCTGTTCGCGCAGTACGTCCAGCAGCAGATCGCGA AATCGGGCGTCGGCAAGTAA
Upstream 100 bases:
>100_bases GATAAACCGTTTCAGCCAACGGCCGCCGCGCAGCCCGGAACCGAGCAGGCACGCGGCAGATGAGAAACACATCAGGCCAT ATCTACGAGGAGATCGAACG
Downstream 100 bases:
>100_bases GCCGCCGGCCACGCGCCCAAACGAAAACGCCCGACCGGTTCGCCGGTCGGGCGTTTTTCGTTGGTGCGGATGGATATGAA CGGATGCGGACGGATGCGTC
Product: phospholipase/lecithinase/hemolysin-like protein
Products: NA
Alternate protein names: GDSL Family Lipase; Outer Membrane Autotransporter Barrel; Lipase; Lipase/Esterase; Phospholipase/Lecithinase/Hemolysin-Like Protein; Outer Membrane Autotransporter; Lipase / Esterase Protein; Triacylglycerol Lipase/Esterase Protein; Lipase / Esterase; Esterase; Moraxella Catarrhalis Adherence Protein McaP; Outer Membrane Esterase; Esterase EstA; EstA Protein; Phospholipase/Lecithinase/Hemolysin-Like; Outer Membrane Autotransporter Barrel Domain Protein; Autotransporter Carboxylic Ester Hydrolase
Number of amino acids: Translated: 379; Mature: 379
Protein sequence:
>379_residues MQTQQHAPSRSRLRMLRTAQVAIAGAALALLAACGGGDDNNGSSASNTPPSGVKMQVVSFGDSLSDVGTYSQIKLGFGGG RFTTNPGQVWTQDVAQYYGDTLQPANQGGFGIPLQATGGLGYAQGGSRVTLQPGIGHADASVPNPDYAQATTTPIADQVK QYLTQHGSFNAGQIVLINGGANDIFYQAQVAQAQGNTPAAQLAAAQAIGLAAQQLGGIVQQIVAAGATHVFVSNVPDIGG TPLALQGGTQAAFTQLSGLFNKTLVGTLAALKVDPTKYVVVDAFTWQDGIAANYQANGFSVSNTDTACNLKAMVQAATQY GVANATAFGSSLFCSPQTYTVANADQTYMFADTVHPTTHLHALFAQYVQQQIAKSGVGK
Sequences:
>Translated_379_residues MQTQQHAPSRSRLRMLRTAQVAIAGAALALLAACGGGDDNNGSSASNTPPSGVKMQVVSFGDSLSDVGTYSQIKLGFGGG RFTTNPGQVWTQDVAQYYGDTLQPANQGGFGIPLQATGGLGYAQGGSRVTLQPGIGHADASVPNPDYAQATTTPIADQVK QYLTQHGSFNAGQIVLINGGANDIFYQAQVAQAQGNTPAAQLAAAQAIGLAAQQLGGIVQQIVAAGATHVFVSNVPDIGG TPLALQGGTQAAFTQLSGLFNKTLVGTLAALKVDPTKYVVVDAFTWQDGIAANYQANGFSVSNTDTACNLKAMVQAATQY GVANATAFGSSLFCSPQTYTVANADQTYMFADTVHPTTHLHALFAQYVQQQIAKSGVGK >Mature_379_residues MQTQQHAPSRSRLRMLRTAQVAIAGAALALLAACGGGDDNNGSSASNTPPSGVKMQVVSFGDSLSDVGTYSQIKLGFGGG RFTTNPGQVWTQDVAQYYGDTLQPANQGGFGIPLQATGGLGYAQGGSRVTLQPGIGHADASVPNPDYAQATTTPIADQVK QYLTQHGSFNAGQIVLINGGANDIFYQAQVAQAQGNTPAAQLAAAQAIGLAAQQLGGIVQQIVAAGATHVFVSNVPDIGG TPLALQGGTQAAFTQLSGLFNKTLVGTLAALKVDPTKYVVVDAFTWQDGIAANYQANGFSVSNTDTACNLKAMVQAATQY GVANATAFGSSLFCSPQTYTVANADQTYMFADTVHPTTHLHALFAQYVQQQIAKSGVGK
Specific function: Unknown
COG id: COG3240
COG function: function code IR; Phospholipase/lecithinase/hemolysin
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 38980; Mature: 38980
Theoretical pI: Translated: 6.88; Mature: 6.88
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQTQQHAPSRSRLRMLRTAQVAIAGAALALLAACGGGDDNNGSSASNTPPSGVKMQVVSF CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEC GDSLSDVGTYSQIKLGFGGGRFTTNPGQVWTQDVAQYYGDTLQPANQGGFGIPLQATGGL CCCHHHCCCCEEEEEECCCCEEECCCCHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCC GYAQGGSRVTLQPGIGHADASVPNPDYAQATTTPIADQVKQYLTQHGSFNAGQIVLINGG CCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEECC ANDIFYQAQVAQAQGNTPAAQLAAAQAIGLAAQQLGGIVQQIVAAGATHVFVSNVPDIGG CCCEEEEEEEHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCC TPLALQGGTQAAFTQLSGLFNKTLVGTLAALKVDPTKYVVVDAFTWQDGIAANYQANGFS CCEEEECCCHHHHHHHHHHHHHHHHHHHHHEEECCCEEEEEEEEECCCCCCCCCCCCCEE VSNTDTACNLKAMVQAATQYGVANATAFGSSLFCSPQTYTVANADQTYMFADTVHPTTHL ECCCCCHHHHHHHHHHHHHCCCCHHHHCCCEEEECCCEEEEECCCCEEEEEECCCCHHHH HALFAQYVQQQIAKSGVGK HHHHHHHHHHHHHHHCCCC >Mature Secondary Structure MQTQQHAPSRSRLRMLRTAQVAIAGAALALLAACGGGDDNNGSSASNTPPSGVKMQVVSF CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEC GDSLSDVGTYSQIKLGFGGGRFTTNPGQVWTQDVAQYYGDTLQPANQGGFGIPLQATGGL CCCHHHCCCCEEEEEECCCCEEECCCCHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCC GYAQGGSRVTLQPGIGHADASVPNPDYAQATTTPIADQVKQYLTQHGSFNAGQIVLINGG CCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEECC ANDIFYQAQVAQAQGNTPAAQLAAAQAIGLAAQQLGGIVQQIVAAGATHVFVSNVPDIGG CCCEEEEEEEHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCC TPLALQGGTQAAFTQLSGLFNKTLVGTLAALKVDPTKYVVVDAFTWQDGIAANYQANGFS CCEEEECCCHHHHHHHHHHHHHHHHHHHHHEEECCCEEEEEEEEECCCCCCCCCCCCCEE VSNTDTACNLKAMVQAATQYGVANATAFGSSLFCSPQTYTVANADQTYMFADTVHPTTHL ECCCCCHHHHHHHHHHHHHCCCCHHHHCCCEEEECCCEEEEECCCCEEEEEECCCCHHHH HALFAQYVQQQIAKSGVGK HHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA