Click here to switch to the map view.

The map label for this gene is ygdL [H]

Identifier: 116690587

GI number: 116690587

Start: 2842654

End: 2843511

Strand: Reverse

Name: ygdL [H]

Synonym: Bcen2424_2567

Alternate gene names: 116690587

Gene position: 2843511-2842654 (Counterclockwise)

Preceding gene: 116690591

Following gene: 116690584

Centisome position: 81.62

GC content: 68.76

Gene sequence:

>858_bases
ATGTCCTCCGCCGACGCTGCCCCGCCCAGTTCTTTCGATCTTACCCCGACCCCGGAAATCCAGCTTGACGTGGATCGCGC
GCGGCGTTTTGGCGGCGTCGCGCGCCTGTATGGCGCGCCGGCCGCGGCCGCATTCGAGCGGGCGCACGTCGCGGTGATCG
GGATCGGCGGCGTCGGGTCGTGGGTGGCCGAGGCGCTCGCGCGCAACGCGGTCGGCACGCTGACGCTGATCGATCTCGAC
AACGTCGCGGAAAGCAACACGAACCGGCAGATCCATGCGCTCGACGGCAATTACGGCAAGCCGAAGGTCGACGCGATGGC
CGAGCGCATCGCGCTGATCGACCCCGCGTGCCGCGTGAACCGGATCGAGGATTTCGTCGAGCCCGACAACTTCGACGCAC
TGCTCGGCGGCGGTTTCGACTACGTGATCGATGCGATCGACAGCGTGCGCACGAAAGTCGCGCTGATCGCGTGGTGCGTC
GCGAAACGGCAGCCGTTGATCGTCGTCGGCGGCGCGGGCGGGCAGCTCGATCCGACGCGCATCCGCATCGACGATCTCGC
GCTGACGATCCAGGACCCGCTGCTGTCGAAGGTGCGTGCGCAGTTGCGCAAGCAGCACGGTTTTCCGCGCGGGCCGAAGG
CGCGTTTCAAGGTCAGCGCCGTGTATTCGGACGAGCCGCTGATTTACCCTGAAGCGGCGGCCTGCGACATCGAGGACGGC
GCGGAGCCATCCGCGGCCGCGCACGTCGCGGGGCTCAACTGCGCGGGTTTCGGTTCGAGCGTGTGCGTGACCGCGAGCTT
CGGTTTCGCGGCGGCCGCGCATGCGCTGCGAGCGATCGCGGCACAGGCGGCCGGCTGA

Upstream 100 bases:

>100_bases
GTATAGCGAACGCGCGAGAATCGTGCGTGCACAGTGGCGCGTGGGAGCGGGGAGTTCAGGCAGAATAGAGGGCTGCACGA
CTTACGTTTTCCTTGCTGCC

Downstream 100 bases:

>100_bases
GCGTGCAACGCGCGGGCAGGAAAGGGTGATGCTGCGGCGCGGGTAACGCGCGTCGAGCGATACGGCAGGTCAGCCGGGCC
ATCGTGGCCCGGCCTCTCGT

Product: UBA/THIF-type NAD/FAD binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 285; Mature: 284

Protein sequence:

>285_residues
MSSADAAPPSSFDLTPTPEIQLDVDRARRFGGVARLYGAPAAAAFERAHVAVIGIGGVGSWVAEALARNAVGTLTLIDLD
NVAESNTNRQIHALDGNYGKPKVDAMAERIALIDPACRVNRIEDFVEPDNFDALLGGGFDYVIDAIDSVRTKVALIAWCV
AKRQPLIVVGGAGGQLDPTRIRIDDLALTIQDPLLSKVRAQLRKQHGFPRGPKARFKVSAVYSDEPLIYPEAAACDIEDG
AEPSAAAHVAGLNCAGFGSSVCVTASFGFAAAAHALRAIAAQAAG

Sequences:

>Translated_285_residues
MSSADAAPPSSFDLTPTPEIQLDVDRARRFGGVARLYGAPAAAAFERAHVAVIGIGGVGSWVAEALARNAVGTLTLIDLD
NVAESNTNRQIHALDGNYGKPKVDAMAERIALIDPACRVNRIEDFVEPDNFDALLGGGFDYVIDAIDSVRTKVALIAWCV
AKRQPLIVVGGAGGQLDPTRIRIDDLALTIQDPLLSKVRAQLRKQHGFPRGPKARFKVSAVYSDEPLIYPEAAACDIEDG
AEPSAAAHVAGLNCAGFGSSVCVTASFGFAAAAHALRAIAAQAAG
>Mature_284_residues
SSADAAPPSSFDLTPTPEIQLDVDRARRFGGVARLYGAPAAAAFERAHVAVIGIGGVGSWVAEALARNAVGTLTLIDLDN
VAESNTNRQIHALDGNYGKPKVDAMAERIALIDPACRVNRIEDFVEPDNFDALLGGGFDYVIDAIDSVRTKVALIAWCVA
KRQPLIVVGGAGGQLDPTRIRIDDLALTIQDPLLSKVRAQLRKQHGFPRGPKARFKVSAVYSDEPLIYPEAAACDIEDGA
EPSAAAHVAGLNCAGFGSSVCVTASFGFAAAAHALRAIAAQAAG

Specific function: Unknown

COG id: COG1179

COG function: function code H; Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hesA/moeB/thiF family [H]

Homologues:

Organism=Escherichia coli, GI1789177, Length=261, Percent_Identity=51.7241379310345, Blast_Score=268, Evalue=4e-73,
Organism=Escherichia coli, GI1787048, Length=124, Percent_Identity=32.258064516129, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI87082356, Length=131, Percent_Identity=32.824427480916, Blast_Score=62, Evalue=3e-11,
Organism=Saccharomyces cerevisiae, GI6321790, Length=201, Percent_Identity=28.3582089552239, Blast_Score=92, Evalue=8e-20,
Organism=Saccharomyces cerevisiae, GI6322825, Length=143, Percent_Identity=32.8671328671329, Blast_Score=79, Evalue=1e-15,
Organism=Drosophila melanogaster, GI24582879, Length=143, Percent_Identity=32.1678321678322, Blast_Score=67, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009036
- InterPro:   IPR016040
- InterPro:   IPR000594 [H]

Pfam domain/function: PF00899 ThiF [H]

EC number: NA

Molecular weight: Translated: 29784; Mature: 29653

Theoretical pI: Translated: 5.36; Mature: 5.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSADAAPPSSFDLTPTPEIQLDVDRARRFGGVARLYGAPAAAAFERAHVAVIGIGGVGS
CCCCCCCCCCCCCCCCCCCEEEEHHHHHHHCCHHHHHCCCHHHHHHCCEEEEEEECCHHH
WVAEALARNAVGTLTLIDLDNVAESNTNRQIHALDGNYGKPKVDAMAERIALIDPACRVN
HHHHHHHHCCCCEEEEEECCHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCHHHHH
RIEDFVEPDNFDALLGGGFDYVIDAIDSVRTKVALIAWCVAKRQPLIVVGGAGGQLDPTR
HHHHHCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCE
IRIDDLALTIQDPLLSKVRAQLRKQHGFPRGPKARFKVSAVYSDEPLIYPEAAACDIEDG
EEEEHEEEEEHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCEECCCCCCCCCCCC
AEPSAAAHVAGLNCAGFGSSVCVTASFGFAAAAHALRAIAAQAAG
CCCCHHHHCCCCEECCCCCCEEEEECCHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SSADAAPPSSFDLTPTPEIQLDVDRARRFGGVARLYGAPAAAAFERAHVAVIGIGGVGS
CCCCCCCCCCCCCCCCCCEEEEHHHHHHHCCHHHHHCCCHHHHHHCCEEEEEEECCHHH
WVAEALARNAVGTLTLIDLDNVAESNTNRQIHALDGNYGKPKVDAMAERIALIDPACRVN
HHHHHHHHCCCCEEEEEECCHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCHHHHH
RIEDFVEPDNFDALLGGGFDYVIDAIDSVRTKVALIAWCVAKRQPLIVVGGAGGQLDPTR
HHHHHCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCE
IRIDDLALTIQDPLLSKVRAQLRKQHGFPRGPKARFKVSAVYSDEPLIYPEAAACDIEDG
EEEEHEEEEEHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCEECCCCCCCCCCCC
AEPSAAAHVAGLNCAGFGSSVCVTASFGFAAAAHALRAIAAQAAG
CCCCHHHHCCCCEECCCCCCEEEEECCHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]