| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
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The map label for this gene is mviN [H]
Identifier: 116690570
GI number: 116690570
Start: 2825865
End: 2827415
Strand: Reverse
Name: mviN [H]
Synonym: Bcen2424_2550
Alternate gene names: 116690570
Gene position: 2827415-2825865 (Counterclockwise)
Preceding gene: 116690572
Following gene: 116690569
Centisome position: 81.16
GC content: 66.15
Gene sequence:
>1551_bases ATGAATCTATTCCGAGCCCTGCTGACGGTCAGCGGCTTCACGCTGCTGTCGCGCGTGACCGGACTGGCCCGCGAGACGCT GATCGCCCGTGCGTTCGGCGCCAGTCAATACACCGACGCGTTCTACGTCGCCTTCCGTATCCCGAACCTGCTGCGCCGCC TGTCCGCCGAAGGCGCGTTCTCGCAGGCGTTCGTGCCGATCCTCGCCGAGTTCAAGAACCAACAGGGGCACGATGCGACG AAGGCGCTCGTCGACGCGATGTCCACCGTGCTCGCGTGGGCGCTGGCCGTGCTGTCGGTCGTCGGGATCGCGGGCGCGTC GTGGGTCGTGTTCGCGGTCGCGTCCGGCCTGCACAGCGACGGCCAGGCGTTTCCGCTCGCGGTCACGATGACGCGGATCA TGTTCCCGTACATCGTGTTCATTTCGCTGACCACGCTCGCGTCGGGCGTGCTGAACACGTACAAGAGCTTCTCGCTGCCC GCGTTCGCGCCGGTGCTGCTCAACGTCGCGTTCATCGCCGCGGCCGTGTTCGTCGCGCCGCACCTGAAGGTGCCGGTCTA CGCGCTCGCGTGGGCGGTCATCGTCGGCGGCGTGCTGCAGTTTCTCGTGCAGTTGCCGGGCCTGAAGAAGATCGACATGG TGCCGCTGATCGGCCTGAACCCGCTGCGCGCGCTGCGTCATCCGGGCGTGAAGCGCGTGCTCGCGAAGATGGTGCCTGCC ACGTTCGCGGTGTCCGTCGCGCAACTGTCGCTGATCATCAACACCAACATCGCGTCGCGGCTCGGGCAGGGCGCCGTGTC GTGGATCAACTACGCCGACCGCCTGATGGAGTTCCCGACGGCGCTGCTCGGCGTCGCGCTCGGCACGATCCTGCTGCCGA GCCTGTCGAAGGCGCACGTCGACGCCGATTCGCACGAATATTCGGCGCTGCTCGACTGGGGGCTGCGCGTCACGTTCCTG CTCGCGGCGCCGAGCGCGCTCGCGCTGTTCTTCTTCGCGACACCGCTCACCGCGACGCTGTTCAACTACGGCAAGTTCGA CGCGCATACCGTCACGATGGTCGCGCGCGCGCTCGCGACCTACGGGATCGGCCTCGTCGGCATCATCCTGATCAAGATCC TCGCGCCGGGCTTCTATGCGAAGCAGGACATCAAGACGCCCGTGAAGATCGCGATCGGCGTGCTGATCGTCACGCAGCTG TCGAACTACGTGTTCGTGCCGCTGATCGGCCACGCGGGCCTCACGCTGAGCATCGGCGTCGGCGCGTGCCTGAATTCGCT GCTGCTGTTCCTCGGGCTGCGCAAGCGCGGCATCTACCAGCCGTCGCCGGGCTGGCTGCGCTTTTTCGTGCAGCTCGTCG GCGCGGCGCTCGTGCTCGCGGGCCTGATGCACTGGTGCGCGATCAGTTTCGACTGGACCGGCATGCGCGCGCAGCCGCTC GATCGCATTGCGCTGATGGCTGCGTGCCTCGTGCTGTTTGCTGCACTATATTTCGGTATGTTGTGGGTGATGGGCTTCAA ATACGCTTACTTCAGAAGGCGCGCCAAGTGA
Upstream 100 bases:
>100_bases GTTCAACGTGATGCCGGCCGGATGGAGCCGCGGGCGGCCGGTGCGCTTTTCGGCATCGGCCGGTGGCCGGGTCGCGCAAC GTCCGTATAATAAGCGCCCC
Downstream 100 bases:
>100_bases CGACCGCAATGACCCGCGTCCTCGACTACTTCAGCACGCTCGTGGCGGACGACGACAGTCTGCCCGTCACGGAAGCCGCG CTGTCGCTGGCGCAGGACGC
Product: integral membrane protein MviN
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 516; Mature: 516
Protein sequence:
>516_residues MNLFRALLTVSGFTLLSRVTGLARETLIARAFGASQYTDAFYVAFRIPNLLRRLSAEGAFSQAFVPILAEFKNQQGHDAT KALVDAMSTVLAWALAVLSVVGIAGASWVVFAVASGLHSDGQAFPLAVTMTRIMFPYIVFISLTTLASGVLNTYKSFSLP AFAPVLLNVAFIAAAVFVAPHLKVPVYALAWAVIVGGVLQFLVQLPGLKKIDMVPLIGLNPLRALRHPGVKRVLAKMVPA TFAVSVAQLSLIINTNIASRLGQGAVSWINYADRLMEFPTALLGVALGTILLPSLSKAHVDADSHEYSALLDWGLRVTFL LAAPSALALFFFATPLTATLFNYGKFDAHTVTMVARALATYGIGLVGIILIKILAPGFYAKQDIKTPVKIAIGVLIVTQL SNYVFVPLIGHAGLTLSIGVGACLNSLLLFLGLRKRGIYQPSPGWLRFFVQLVGAALVLAGLMHWCAISFDWTGMRAQPL DRIALMAACLVLFAALYFGMLWVMGFKYAYFRRRAK
Sequences:
>Translated_516_residues MNLFRALLTVSGFTLLSRVTGLARETLIARAFGASQYTDAFYVAFRIPNLLRRLSAEGAFSQAFVPILAEFKNQQGHDAT KALVDAMSTVLAWALAVLSVVGIAGASWVVFAVASGLHSDGQAFPLAVTMTRIMFPYIVFISLTTLASGVLNTYKSFSLP AFAPVLLNVAFIAAAVFVAPHLKVPVYALAWAVIVGGVLQFLVQLPGLKKIDMVPLIGLNPLRALRHPGVKRVLAKMVPA TFAVSVAQLSLIINTNIASRLGQGAVSWINYADRLMEFPTALLGVALGTILLPSLSKAHVDADSHEYSALLDWGLRVTFL LAAPSALALFFFATPLTATLFNYGKFDAHTVTMVARALATYGIGLVGIILIKILAPGFYAKQDIKTPVKIAIGVLIVTQL SNYVFVPLIGHAGLTLSIGVGACLNSLLLFLGLRKRGIYQPSPGWLRFFVQLVGAALVLAGLMHWCAISFDWTGMRAQPL DRIALMAACLVLFAALYFGMLWVMGFKYAYFRRRAK >Mature_516_residues MNLFRALLTVSGFTLLSRVTGLARETLIARAFGASQYTDAFYVAFRIPNLLRRLSAEGAFSQAFVPILAEFKNQQGHDAT KALVDAMSTVLAWALAVLSVVGIAGASWVVFAVASGLHSDGQAFPLAVTMTRIMFPYIVFISLTTLASGVLNTYKSFSLP AFAPVLLNVAFIAAAVFVAPHLKVPVYALAWAVIVGGVLQFLVQLPGLKKIDMVPLIGLNPLRALRHPGVKRVLAKMVPA TFAVSVAQLSLIINTNIASRLGQGAVSWINYADRLMEFPTALLGVALGTILLPSLSKAHVDADSHEYSALLDWGLRVTFL LAAPSALALFFFATPLTATLFNYGKFDAHTVTMVARALATYGIGLVGIILIKILAPGFYAKQDIKTPVKIAIGVLIVTQL SNYVFVPLIGHAGLTLSIGVGACLNSLLLFLGLRKRGIYQPSPGWLRFFVQLVGAALVLAGLMHWCAISFDWTGMRAQPL DRIALMAACLVLFAALYFGMLWVMGFKYAYFRRRAK
Specific function: Unknown
COG id: COG0728
COG function: function code R; Uncharacterized membrane protein, putative virulence factor
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the mviN family [H]
Homologues:
Organism=Escherichia coli, GI1787309, Length=515, Percent_Identity=53.5922330097087, Blast_Score=504, Evalue=1e-144,
Paralogues:
None
Copy number: 10-20 Molecules/Cell [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004268 [H]
Pfam domain/function: PF03023 MVIN [H]
EC number: NA
Molecular weight: Translated: 55640; Mature: 55640
Theoretical pI: Translated: 10.59; Mature: 10.59
Prosite motif: PS00962 RIBOSOMAL_S2_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNLFRALLTVSGFTLLSRVTGLARETLIARAFGASQYTDAFYVAFRIPNLLRRLSAEGAF CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCH SQAFVPILAEFKNQQGHDATKALVDAMSTVLAWALAVLSVVGIAGASWVVFAVASGLHSD HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCC GQAFPLAVTMTRIMFPYIVFISLTTLASGVLNTYKSFSLPAFAPVLLNVAFIAAAVFVAP CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHC HLKVPVYALAWAVIVGGVLQFLVQLPGLKKIDMVPLIGLNPLRALRHPGVKRVLAKMVPA CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHH TFAVSVAQLSLIINTNIASRLGQGAVSWINYADRLMEFPTALLGVALGTILLPSLSKAHV HHHHHHHHHHHHHCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHC DADSHEYSALLDWGLRVTFLLAAPSALALFFFATPLTATLFNYGKFDAHTVTMVARALAT CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH YGIGLVGIILIKILAPGFYAKQDIKTPVKIAIGVLIVTQLSNYVFVPLIGHAGLTLSIGV HHHHHHHHHHHHHHCCCCCCHHHCCCHHHHHHHHHHHHHHCCEEEEEEECCCCCEEEHHH GACLNSLLLFLGLRKRGIYQPSPGWLRFFVQLVGAALVLAGLMHWCAISFDWTGMRAQPL HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHH DRIALMAACLVLFAALYFGMLWVMGFKYAYFRRRAK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MNLFRALLTVSGFTLLSRVTGLARETLIARAFGASQYTDAFYVAFRIPNLLRRLSAEGAF CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCH SQAFVPILAEFKNQQGHDATKALVDAMSTVLAWALAVLSVVGIAGASWVVFAVASGLHSD HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCC GQAFPLAVTMTRIMFPYIVFISLTTLASGVLNTYKSFSLPAFAPVLLNVAFIAAAVFVAP CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHC HLKVPVYALAWAVIVGGVLQFLVQLPGLKKIDMVPLIGLNPLRALRHPGVKRVLAKMVPA CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHH TFAVSVAQLSLIINTNIASRLGQGAVSWINYADRLMEFPTALLGVALGTILLPSLSKAHV HHHHHHHHHHHHHCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHC DADSHEYSALLDWGLRVTFLLAAPSALALFFFATPLTATLFNYGKFDAHTVTMVARALAT CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH YGIGLVGIILIKILAPGFYAKQDIKTPVKIAIGVLIVTQLSNYVFVPLIGHAGLTLSIGV HHHHHHHHHHHHHHCCCCCCHHHCCCHHHHHHHHHHHHHHCCEEEEEEECCCCCEEEHHH GACLNSLLLFLGLRKRGIYQPSPGWLRFFVQLVGAALVLAGLMHWCAISFDWTGMRAQPL HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHH DRIALMAACLVLFAALYFGMLWVMGFKYAYFRRRAK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8200538; 11677609 [H]