| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
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The map label for this gene is yusZ [H]
Identifier: 116690500
GI number: 116690500
Start: 2751975
End: 2752874
Strand: Direct
Name: yusZ [H]
Synonym: Bcen2424_2480
Alternate gene names: 116690500
Gene position: 2751975-2752874 (Clockwise)
Preceding gene: 116690499
Following gene: 116690502
Centisome position: 78.99
GC content: 72.33
Gene sequence:
>900_bases ATGAAGGAAGTCGTCCTCGTCACCGGCGCGTCCAGCGGCTTCGGCTTGCTGACGGTCCAGGCGCTCGCGCGCGCCGGTCA CACGGTCTATGCATCGATGCGCGAGCGCGCCGGGCGCAACGCGCCGCGCGCCGCCGCCGTCGCGGCCTATGCGCAGGAAC ACGGCGTCGACCTGCGCAGCCTCGAACTCGACGTCGGCGACGACGCATCGGTCGACGCCGCCATCGAGCGCGTGATCACC GACAACGGCCGTCTGGACGTCGTCGTCCACAACGCCGGCCACATGGTGTTCGGGCCGGCCGAAGCCTTCACGCCGGAGCA GCTTGCGCAGCTCTACGACGTCAACGTCGTGTCGACCCAGCGCGTGAACCGCGCGGCGCTGCCGCACCTGCGCCGCCAGG GCCGCGGCCTGCTCGTGTGGGTGTCGTCCTCGTCGGCGCGCGGCGGCACCCCGCCGTTCCTCGCCCCCTACTTCGCCGCG AAAGCCGCGATGGACTCGCTCGCGGTGTCCTACGCCGCCGAACTCGCCCGCTGGGGCATCGAAACGTCGATCGTCGTGCC GGGCGCGTTCACCCGAGGCACGAATCACTTCCTCCATGCGGGCAAGCCGGCCGATACCGCCGTGCAGGCTGCGTACGACA GCGGGCCGTACGCGGGCGTCGCCGATCAGGCGTTGACGGGCCTCGCCGCGCTCGAACCGGCGGACGCCGACGCCGGCGCC GTCGCCACGGCGATTGCCGAGCTCGTCGCGGCGCCGGCCGGCAAGCGCCCCTACCGCGTGTTCGTCGACCCGTCGCAGGA CGGCGCCGAGGAAGTGTTCCGTGTCGGCGATCGCATCCGCCGCGAGATGTTCCGGAACATCGGGCTCGCCGATCTGCTCG CGCCGCGTGTCGACGGCTGA
Upstream 100 bases:
>100_bases CCGAACGGCGCGTGGATCAACGGCCAGATCCTGCGCGCCAACGGCGGCATGTGCTGACGCCCCCTCGCCGCCACCTCATC TTTCTGCCAGGAGATCGCTC
Downstream 100 bases:
>100_bases TTTCTTCGCGCGCCGGGCCGGCCGGCGCGCGTCAATCCCGCTCGCAGAAGCCGAGAATCGCGTCAGCGACCGCCGTCGCG GATTCGCGCTGCGGGAAGTG
Product: short-chain dehydrogenase/reductase SDR
Products: 2,3-Dihydroxybenzoate; H+; Nicotinamide adenine dinucleotide - reduced [C]
Alternate protein names: ORFA [H]
Number of amino acids: Translated: 299; Mature: 299
Protein sequence:
>299_residues MKEVVLVTGASSGFGLLTVQALARAGHTVYASMRERAGRNAPRAAAVAAYAQEHGVDLRSLELDVGDDASVDAAIERVIT DNGRLDVVVHNAGHMVFGPAEAFTPEQLAQLYDVNVVSTQRVNRAALPHLRRQGRGLLVWVSSSSARGGTPPFLAPYFAA KAAMDSLAVSYAAELARWGIETSIVVPGAFTRGTNHFLHAGKPADTAVQAAYDSGPYAGVADQALTGLAALEPADADAGA VATAIAELVAAPAGKRPYRVFVDPSQDGAEEVFRVGDRIRREMFRNIGLADLLAPRVDG
Sequences:
>Translated_299_residues MKEVVLVTGASSGFGLLTVQALARAGHTVYASMRERAGRNAPRAAAVAAYAQEHGVDLRSLELDVGDDASVDAAIERVIT DNGRLDVVVHNAGHMVFGPAEAFTPEQLAQLYDVNVVSTQRVNRAALPHLRRQGRGLLVWVSSSSARGGTPPFLAPYFAA KAAMDSLAVSYAAELARWGIETSIVVPGAFTRGTNHFLHAGKPADTAVQAAYDSGPYAGVADQALTGLAALEPADADAGA VATAIAELVAAPAGKRPYRVFVDPSQDGAEEVFRVGDRIRREMFRNIGLADLLAPRVDG >Mature_299_residues MKEVVLVTGASSGFGLLTVQALARAGHTVYASMRERAGRNAPRAAAVAAYAQEHGVDLRSLELDVGDDASVDAAIERVIT DNGRLDVVVHNAGHMVFGPAEAFTPEQLAQLYDVNVVSTQRVNRAALPHLRRQGRGLLVWVSSSSARGGTPPFLAPYFAA KAAMDSLAVSYAAELARWGIETSIVVPGAFTRGTNHFLHAGKPADTAVQAAYDSGPYAGVADQALTGLAALEPADADAGA VATAIAELVAAPAGKRPYRVFVDPSQDGAEEVFRVGDRIRREMFRNIGLADLLAPRVDG
Specific function: Siderophore biosynthesis; enterobactin biosynthesis. [C]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI223718074, Length=192, Percent_Identity=39.0625, Blast_Score=96, Evalue=4e-20, Organism=Homo sapiens, GI7657478, Length=187, Percent_Identity=32.620320855615, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI119392083, Length=190, Percent_Identity=32.6315789473684, Blast_Score=72, Evalue=5e-13, Organism=Homo sapiens, GI32483357, Length=209, Percent_Identity=26.7942583732057, Blast_Score=67, Evalue=3e-11, Organism=Homo sapiens, GI4504503, Length=195, Percent_Identity=31.2820512820513, Blast_Score=65, Evalue=8e-11, Organism=Escherichia coli, GI1786812, Length=186, Percent_Identity=31.7204301075269, Blast_Score=74, Evalue=8e-15, Organism=Escherichia coli, GI1786701, Length=227, Percent_Identity=29.0748898678414, Blast_Score=70, Evalue=2e-13, Organism=Escherichia coli, GI1787335, Length=189, Percent_Identity=28.5714285714286, Blast_Score=69, Evalue=4e-13, Organism=Escherichia coli, GI1790717, Length=186, Percent_Identity=26.3440860215054, Blast_Score=69, Evalue=5e-13, Organism=Escherichia coli, GI1788459, Length=198, Percent_Identity=28.2828282828283, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI87082100, Length=183, Percent_Identity=29.5081967213115, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI2367175, Length=190, Percent_Identity=30.5263157894737, Blast_Score=62, Evalue=4e-11, Organism=Caenorhabditis elegans, GI71994604, Length=237, Percent_Identity=30.379746835443, Blast_Score=76, Evalue=3e-14, Organism=Caenorhabditis elegans, GI71994600, Length=215, Percent_Identity=30.6976744186047, Blast_Score=75, Evalue=4e-14, Organism=Caenorhabditis elegans, GI115534660, Length=192, Percent_Identity=30.7291666666667, Blast_Score=72, Evalue=5e-13, Organism=Caenorhabditis elegans, GI17562906, Length=210, Percent_Identity=30.952380952381, Blast_Score=71, Evalue=6e-13, Organism=Caenorhabditis elegans, GI17559104, Length=212, Percent_Identity=30.188679245283, Blast_Score=71, Evalue=6e-13, Organism=Caenorhabditis elegans, GI17560676, Length=188, Percent_Identity=30.3191489361702, Blast_Score=67, Evalue=8e-12, Organism=Caenorhabditis elegans, GI17557780, Length=196, Percent_Identity=29.0816326530612, Blast_Score=66, Evalue=2e-11, Organism=Saccharomyces cerevisiae, GI6322861, Length=203, Percent_Identity=28.5714285714286, Blast_Score=63, Evalue=7e-11, Organism=Drosophila melanogaster, GI24651139, Length=282, Percent_Identity=27.6595744680851, Blast_Score=76, Evalue=2e-14, Organism=Drosophila melanogaster, GI28571526, Length=189, Percent_Identity=32.8042328042328, Blast_Score=75, Evalue=5e-14, Organism=Drosophila melanogaster, GI23397609, Length=226, Percent_Identity=31.4159292035398, Blast_Score=75, Evalue=6e-14, Organism=Drosophila melanogaster, GI21357041, Length=188, Percent_Identity=31.3829787234043, Blast_Score=72, Evalue=5e-13, Organism=Drosophila melanogaster, GI24644339, Length=250, Percent_Identity=31.6, Blast_Score=69, Evalue=5e-12, Organism=Drosophila melanogaster, GI281364892, Length=190, Percent_Identity=30.5263157894737, Blast_Score=66, Evalue=4e-11, Organism=Drosophila melanogaster, GI24643142, Length=186, Percent_Identity=32.258064516129, Blast_Score=64, Evalue=9e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.3.1.28 [C]
Molecular weight: Translated: 31383; Mature: 31383
Theoretical pI: Translated: 6.17; Mature: 6.17
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKEVVLVTGASSGFGLLTVQALARAGHTVYASMRERAGRNAPRAAAVAAYAQEHGVDLRS CCEEEEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCEEE LELDVGDDASVDAAIERVITDNGRLDVVVHNAGHMVFGPAEAFTPEQLAQLYDVNVVSTQ EEECCCCCCCHHHHHHHHHCCCCCEEEEEECCCCEEECCHHCCCHHHHHHHHCCCCHHHH RVNRAALPHLRRQGRGLLVWVSSSSARGGTPPFLAPYFAAKAAMDSLAVSYAAELARWGI HHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC ETSIVVPGAFTRGTNHFLHAGKPADTAVQAAYDSGPYAGVADQALTGLAALEPADADAGA CEEEEECCCCCCCCCCEEECCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCHHH VATAIAELVAAPAGKRPYRVFVDPSQDGAEEVFRVGDRIRREMFRNIGLADLLAPRVDG HHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCC >Mature Secondary Structure MKEVVLVTGASSGFGLLTVQALARAGHTVYASMRERAGRNAPRAAAVAAYAQEHGVDLRS CCEEEEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCEEE LELDVGDDASVDAAIERVITDNGRLDVVVHNAGHMVFGPAEAFTPEQLAQLYDVNVVSTQ EEECCCCCCCHHHHHHHHHCCCCCEEEEEECCCCEEECCHHCCCHHHHHHHHCCCCHHHH RVNRAALPHLRRQGRGLLVWVSSSSARGGTPPFLAPYFAAKAAMDSLAVSYAAELARWGI HHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC ETSIVVPGAFTRGTNHFLHAGKPADTAVQAAYDSGPYAGVADQALTGLAALEPADADAGA CEEEEECCCCCCCCCCEEECCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCHHH VATAIAELVAAPAGKRPYRVFVDPSQDGAEEVFRVGDRIRREMFRNIGLADLLAPRVDG HHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NAD+ [C]
Metal ions: NA
Kcat value (1/min): 5550 [C]
Specific activity: 66
Km value (mM): 0.26 {methyl-2,3-dehydro-3-hydroxybenzoate}} 0.2 {3-oxocyclohexane-1-carboxylic} 0.3 {2,3-dihydro-2,3-dihydroxybenzoate}} [C]
Substrates: 2,3-Dihydro-2,3-dihydroxybenzoate; Nicotinamide adenine dinucleotide [C]
Specific reaction: 2,3-Dihydro-2,3-dihydroxybenzoate + Nicotinamide adenine dinucleotide <==> 2,3-Dihydroxybenzoate + H+ + Nicotinamide adenine dinucleotide - reduced [C]
General reaction: Redox reaction [C]
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9353931; 9384377; 8396117 [H]